Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 2.1e-180 635.6 318 100.0
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 4.3e-141 505.0 325 79.4
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 9.5e-141 503.8 324 78.7
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 2.3e-139 499.2 331 76.4
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 2.7e-135 485.7 327 74.9
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 4.3e-133 478.4 321 73.8
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 5.6e-133 478.0 321 73.8
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 6.8e-131 471.1 321 73.2
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 8.9e-131 470.7 321 72.3
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 1.2e-130 470.3 323 72.4
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 2.9e-129 465.7 326 72.7
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 2.9e-129 465.7 322 72.4
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 1.4e-128 463.4 315 73.0
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.2e-127 460.3 322 72.4
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 7.8e-127 457.6 323 70.9
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 1.0e-126 457.2 323 73.1
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.3e-126 456.8 322 72.0
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 3.3e-125 452.2 321 70.1
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 4.3e-125 451.8 314 72.3
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 7.3e-125 451.1 313 73.2
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.6e-124 449.9 320 69.7
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 4.7e-124 448.4 321 69.5
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.1e-123 447.2 321 69.2
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 1.1e-123 447.2 331 68.6
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 1.4e-123 446.8 320 70.3
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 2.3e-123 446.0 321 69.5
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 3.1e-123 445.7 324 68.5
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 6.8e-123 444.5 321 69.5
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 8.9e-123 444.1 326 68.4
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.2e-122 443.7 323 69.0
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.0e-122 443.0 325 69.5
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 3.4e-122 442.2 326 68.7
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 3.4e-122 442.2 326 69.0
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 7.5e-122 441.0 328 68.9
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 1.7e-121 439.9 324 67.9
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 2.2e-121 439.5 323 67.8
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 2.2e-121 439.5 351 65.8
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 3.7e-121 438.7 321 69.2
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 4.9e-121 438.3 323 67.8
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 6.4e-121 438.0 323 69.3
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 6.4e-121 438.0 324 68.5
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 6.4e-121 438.0 321 68.5
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 8.3e-121 437.6 321 68.8
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 1.9e-120 436.4 325 67.7
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 1.9e-120 436.4 327 67.0
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 3.2e-120 435.6 323 67.2
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 4.1e-120 435.3 323 69.3
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 5.4e-120 434.9 358 63.7
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 7.1e-120 434.5 320 69.7
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 7.1e-120 434.5 318 70.4
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 9.2e-120 434.1 319 71.2
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 2.7e-119 432.6 321 67.6
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 7.8e-119 431.0 322 68.9
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.0e-118 430.6 321 66.7
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 1.3e-118 430.3 323 68.7
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 1.7e-118 429.9 325 68.9
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 3.0e-118 429.1 322 65.8
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 5.1e-118 428.3 326 67.2
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 8.6e-118 427.6 321 67.3
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 8.6e-118 427.6 318 68.9
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 1.1e-117 427.2 324 67.3
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.1e-117 427.2 318 70.8
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 1.1e-117 427.2 318 70.4
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 1.1e-117 427.2 327 66.1
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.5e-117 426.8 328 67.7
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 4.3e-117 425.2 324 66.7
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 7.3e-117 424.5 322 66.5
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 7.3e-117 424.5 351 64.1
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 1.6e-116 423.3 323 65.9
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 8.1e-116 421.0 318 65.7
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 1.1e-115 420.6 324 65.7
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 1.4e-115 420.2 323 64.4
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 5.2e-115 418.3 320 63.8
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 6.8e-115 417.9 320 65.9
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 1.2e-114 417.2 318 65.4
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 2.0e-114 416.4 328 67.7
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 3.4e-114 415.6 322 64.3
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 7.6e-114 414.5 321 66.7
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.3e-113 413.7 321 66.0
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.7e-113 413.3 325 64.9
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 2.2e-113 412.9 321 65.7
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.2e-113 412.9 323 65.9
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 2.9e-113 412.5 318 64.5
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 3.8e-113 412.1 318 63.8
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.9e-113 411.8 323 65.9
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 8.4e-113 411.0 324 63.6
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.4e-112 410.2 328 64.3
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.4e-112 410.2 328 64.3
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 2.4e-112 409.5 325 64.3
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 5.4e-112 408.3 329 64.7
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 7.1e-112 407.9 324 65.4
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 7.1e-112 407.9 323 65.0
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 2.1e-111 406.4 334 63.2
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 1.7e-110 403.3 330 63.0
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 5.1e-110 401.7 262 74.4
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.5e-109 400.2 331 62.5
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 1.9e-109 399.8 285 70.9
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 3.6e-108 395.6 332 63.3
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 8.1e-108 394.4 323 62.8
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 4.4e-106 388.7 324 60.8
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 3.2e-104 382.5 262 69.8
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 1.1e-101 374.0 498 45.0
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.5e-101 373.6 324 62.0
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 3.3e-101 372.5 381 52.8
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 2.1e-100 369.8 264 67.0
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 1.1e-99 367.5 261 70.1
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 7.4e-93 344.7 322 56.8
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 4.9e-81 305.4 292 52.1
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 2.1e-79 300.1 185 80.5
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 3.5e-79 299.3 267 54.7
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.6e-79 298.9 197 75.1
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.8e-78 297.0 190 77.9
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 2.5e-77 293.1 170 84.1
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.5e-74 283.9 178 78.7
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 4.5e-74 282.3 178 77.5
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 2.9e-73 279.6 167 82.0
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 5.7e-61 238.8 207 58.5
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 4.4e-53 212.6 185 58.4
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 5.0e-49 199.1 122 80.3
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 5.0e-49 199.1 163 60.1
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 3.2e-48 196.4 185 56.2
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.8e-44 183.3 121 76.0
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 2.0e-42 177.2 123 70.7
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.5e-42 176.4 121 73.6
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 8.0e-39 165.2 115 71.3
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.7e-33 147.5 121 66.1
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 7.2e-32 142.1 95 76.8
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 9.5e-32 141.7 151 48.3
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 2.3e-22 110.5 73 72.6
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 8.9e-22 108.6 120 55.0
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 9.8e-13 78.6 158 34.2
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 1.1e-11 75.1 55 69.1
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 4.1e-11 73.2 148 33.1
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 6.6e-09 65.9 174 25.3
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.9e-08 64.3 138 35.5
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 9.5e-08 62.0 144 32.6
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.8e-07 60.5 49 65.3
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 4.7e-07 59.7 179 27.4
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.3e-06 57.4 143 30.1


User provided reference genes

Program Settings