Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 7.9e-195 683.7 374 100.0
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 1.0e-149 533.9 377 76.4
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 3.2e-148 528.9 437 67.0
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 3.0e-146 522.3 377 79.3
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 2.1e-131 473.0 376 67.3
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 2.8e-131 472.6 374 75.4
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 3.0e-130 469.2 377 65.8
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 2.8e-128 462.6 370 66.8
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 2.8e-128 462.6 375 65.6
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 4.1e-127 458.8 414 62.8
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 7.0e-127 458.0 377 67.6
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 9.2e-127 457.6 377 65.3
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 9.2e-127 457.6 375 69.1
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 2.0e-126 456.4 426 64.8
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 2.9e-125 452.6 377 67.6
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 1.1e-124 450.7 379 72.8
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 3.3e-124 449.1 379 69.7
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 4.3e-124 448.7 377 67.6
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 2.1e-123 446.4 381 71.1
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 6.1e-123 444.9 385 67.0
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 6.1e-123 444.9 375 68.8
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.3e-122 443.0 356 67.1
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 5.2e-122 441.8 377 64.7
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 8.9e-122 441.0 357 64.1
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 3.4e-121 439.1 377 63.1
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 4.4e-121 438.7 381 63.3
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 3.7e-120 435.6 376 65.4
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.1e-119 434.1 378 64.6
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 7.0e-119 431.4 385 66.8
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 2.0e-118 429.9 377 66.0
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 2.7e-118 429.5 404 63.1
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 6.0e-118 428.3 376 64.4
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 7.8e-118 427.9 376 64.1
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 7.8e-118 427.9 379 68.9
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.3e-117 427.2 376 64.4
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 8.6e-117 424.5 380 61.3
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 3.3e-116 422.5 378 65.6
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 3.3e-116 422.5 353 67.7
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 7.3e-116 421.4 376 63.6
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 9.5e-116 421.0 424 59.2
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 9.5e-116 421.0 377 62.1
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 1.2e-115 420.6 357 65.0
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 4.7e-115 418.7 383 67.6
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 6.2e-115 418.3 353 65.7
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 6.2e-115 418.3 384 60.4
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 8.0e-115 417.9 352 64.5
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 3.1e-114 416.0 378 70.4
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 8.9e-114 414.5 423 56.5
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 8.9e-114 414.5 381 61.2
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 8.9e-114 414.5 377 63.7
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 5.8e-113 411.8 357 65.5
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 5.8e-113 411.8 380 62.1
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 5.8e-113 411.8 390 60.8
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 7.5e-113 411.4 378 69.8
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 2.2e-112 409.8 376 61.7
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 8.3e-112 407.9 384 60.9
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 5.4e-111 405.2 355 61.7
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 9.2e-111 404.4 357 68.9
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.2e-110 404.1 366 60.7
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 1.2e-110 404.1 397 63.7
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 1.6e-110 403.7 357 63.0
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.6e-110 403.7 366 60.7
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 2.7e-110 402.9 380 68.9
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 4.6e-110 402.1 366 66.9
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 2.3e-109 399.8 353 63.7
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.5e-108 397.1 398 58.5
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 7.3e-108 394.8 352 66.2
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 7.3e-108 394.8 379 64.9
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 7.3e-108 394.8 382 62.8
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 7.3e-108 394.8 382 58.6
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 6.2e-107 391.7 354 62.1
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 9.9e-105 384.4 359 61.6
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.7e-104 383.6 367 58.6
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 3.2e-103 379.4 361 57.9
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 4.1e-103 379.0 384 61.5
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 5.4e-103 378.6 362 64.4
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 2.7e-102 376.3 362 64.1
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 3.5e-102 375.9 384 58.6
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 6.0e-102 375.2 383 56.7
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 3.9e-101 372.5 379 64.1
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 6.6e-101 371.7 381 58.3
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 1.1e-100 370.9 380 59.7
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 1.2e-99 367.5 353 58.9
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 2.1e-99 366.7 379 61.7
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 2.8e-99 366.3 365 58.4
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 3.6e-99 365.9 361 62.6
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 1.4e-98 364.0 355 65.6
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 1.8e-98 363.6 375 56.8
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 5.2e-98 362.1 379 60.9
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 6.8e-98 361.7 396 55.8
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 2.6e-97 359.8 358 62.6
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 3.8e-96 355.9 358 57.8
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 4.9e-96 355.5 360 59.2
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 1.1e-95 354.4 360 57.8
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 9.2e-95 351.3 412 51.2
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 3.5e-94 349.4 381 58.3
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 7.8e-94 348.2 379 55.1
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 3.9e-93 345.9 355 56.3
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 1.1e-92 344.4 359 59.6
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 7.3e-92 341.7 380 56.8
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 1.2e-91 340.9 366 58.2
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 3.6e-91 339.3 396 54.8
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 9.0e-90 334.7 383 58.0
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 9.0e-90 334.7 383 58.0
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 2.0e-89 333.6 383 57.2
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 4.4e-89 332.4 369 54.5
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 5.8e-89 332.0 327 60.9
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 5.8e-89 332.0 504 47.0
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 2.2e-88 330.1 394 55.3
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 1.1e-87 327.8 359 54.6
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.1e-87 327.8 362 52.2
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 5.4e-87 325.5 378 52.9
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 3.5e-86 322.8 378 53.2
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 1.1e-84 317.8 358 56.7
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.5e-84 317.4 397 55.4
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 7.3e-84 315.1 358 53.1
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 7.3e-84 315.1 283 63.6
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 2.1e-83 313.5 478 45.4
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.8e-83 313.2 337 54.0
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 1.5e-81 307.4 359 55.4
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.4e-81 306.2 314 59.2
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 7.1e-79 298.5 400 51.2
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 1.0e-77 294.7 358 52.2
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 1.8e-77 293.9 352 51.7
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 8.4e-72 275.0 398 48.2
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 5.5e-71 272.3 286 59.8
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.6e-70 270.8 406 50.7
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 3.5e-70 269.6 262 57.6
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 2.8e-59 233.4 382 44.0
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.1e-58 231.5 167 70.1
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.1e-58 229.6 302 51.3
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.1e-58 229.6 302 51.3
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 2.6e-57 226.9 273 59.3
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.6e-54 217.6 252 54.4
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.3e-52 209.9 201 56.7
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 2.5e-47 193.7 99 91.9
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.2e-47 193.0 99 87.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.2e-47 193.0 99 87.9
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 1.6e-46 191.0 315 44.1
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 3.0e-45 186.8 187 59.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 3.0e-45 186.8 142 63.4
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 9.4e-39 165.2 94 84.0
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.8e-34 151.0 241 45.6
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 2.0e-33 147.5 97 76.3
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 5.9e-33 146.0 219 47.5
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 7.7e-33 145.6 225 46.2
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 2.1e-30 137.5 219 45.2
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 1.2e-25 121.7 72 77.8
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.3e-24 118.2 368 31.0
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.3e-24 118.2 136 54.4
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 5.0e-24 116.3 111 48.6
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 1.6e-22 111.3 189 41.3
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 2.7e-22 110.5 186 52.2
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 3.6e-22 110.2 130 44.6
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.4e-21 108.2 66 78.8
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 2.0e-17 94.4 74 58.1
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 2.0e-09 67.8 63 52.4
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 2.9e-08 63.9 74 48.6


User provided reference genes

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