Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 5.2e-262 907.1 443 100.0
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 7.6e-189 664.1 438 73.1
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 1.2e-178 630.2 442 68.8
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 3.9e-177 625.2 442 68.1
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 1.5e-176 623.2 447 67.8
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.2e-173 613.6 450 67.3
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 2.6e-173 612.5 437 67.5
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 5.0e-172 608.2 443 66.4
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 5.5e-171 604.7 446 67.3
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 2.1e-170 602.8 437 67.0
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 4.7e-170 601.7 444 66.4
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 8.8e-169 597.4 450 66.4
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 3.3e-168 595.5 442 64.9
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 5.7e-168 594.7 446 65.5
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 7.4e-168 594.3 443 65.7
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 1.3e-167 593.6 445 65.6
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.2e-167 592.8 445 64.9
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 2.8e-167 592.4 442 66.1
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 3.7e-167 592.0 450 64.7
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 3.7e-167 592.0 444 65.3
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 8.2e-167 590.9 436 65.4
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.1e-166 590.5 442 65.8
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 5.9e-165 584.7 447 65.1
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.0e-164 583.9 445 64.7
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 3.8e-164 582.0 442 65.2
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.1e-163 580.5 440 64.5
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 1.1e-163 580.5 441 64.9
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 1.1e-163 580.5 440 64.8
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.4e-163 580.1 443 63.2
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 1.9e-163 579.7 440 64.3
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 2.5e-163 579.3 440 64.5
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.0e-161 573.9 445 62.9
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 1.4e-161 573.5 449 62.8
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.4e-161 573.5 442 62.9
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.4e-161 573.5 441 63.0
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 3.9e-161 572.0 444 62.6
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 5.2e-161 571.6 448 62.1
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 4.4e-160 568.5 443 62.5
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 1.3e-159 567.0 433 63.3
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 6.3e-159 564.7 437 62.9
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 1.4e-158 563.5 442 62.2
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.1e-158 562.0 440 62.5
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 7.0e-158 561.2 432 62.0
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.0e-157 559.7 440 62.3
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 2.6e-157 559.3 441 61.0
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.6e-157 559.3 443 62.5
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 3.5e-157 558.9 442 62.2
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 5.9e-157 558.1 442 62.4
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 5.0e-156 555.1 438 62.3
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.0e-156 555.1 445 62.7
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 5.0e-156 555.1 441 60.8
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 8.5e-156 554.3 429 63.6
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.5e-155 553.5 443 61.9
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.5e-155 553.5 443 62.1
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 3.2e-155 552.4 440 62.3
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 4.2e-155 552.0 414 65.5
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 5.5e-155 551.6 438 62.1
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 5.5e-155 551.6 429 63.4
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 9.4e-155 550.8 440 61.4
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 1.2e-154 550.4 432 60.9
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 4.7e-154 548.5 439 60.6
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 1.8e-153 546.6 428 63.1
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 8.8e-153 544.3 430 62.6
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 2.6e-152 542.7 437 59.7
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 3.4e-152 542.3 373 68.6
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 4.4e-152 542.0 430 60.5
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 7.5e-152 541.2 436 61.0
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 7.5e-152 541.2 433 60.5
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 1.3e-151 540.4 372 68.8
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 2.2e-151 539.7 429 62.0
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 4.8e-151 538.5 443 59.8
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 8.3e-151 537.7 375 68.0
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 1.4e-150 537.0 447 60.0
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.8e-150 536.6 344 74.4
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 1.2e-149 533.9 447 58.6
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 1.2e-149 533.9 379 68.3
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 8.5e-148 527.7 435 60.5
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 8.5e-148 527.7 434 59.9
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 1.9e-147 526.6 407 65.1
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 2.1e-146 523.1 443 58.9
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 2.1e-146 523.1 443 58.9
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 2.1e-146 523.1 412 61.4
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 2.7e-146 522.7 430 60.5
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 8.0e-146 521.2 441 60.1
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 8.0e-146 521.2 458 59.4
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.8e-145 520.0 447 59.3
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.2e-145 518.5 434 59.9
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.2e-145 518.5 434 59.9
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.6e-144 516.2 442 63.1
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 3.4e-144 515.8 375 65.3
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 3.7e-143 512.3 434 61.1
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 4.8e-143 511.9 437 57.4
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 4.8e-143 511.9 458 57.4
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 4.1e-142 508.8 435 60.2
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 5.4e-142 508.4 433 57.7
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.2e-141 507.3 440 60.5
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.6e-141 506.9 346 69.1
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 2.9e-140 502.7 432 60.2
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 3.8e-140 502.3 440 58.6
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 7.2e-139 498.0 434 59.7
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 2.1e-138 496.5 429 59.4
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 2.8e-138 496.1 443 57.6
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 8.0e-138 494.6 451 57.6
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.4e-137 493.8 432 58.8
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 5.2e-137 491.9 433 58.4
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 6.8e-137 491.5 372 62.9
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 6.8e-137 491.5 437 55.4
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 8.9e-137 491.1 433 60.0
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 9.8e-136 487.6 443 58.2
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 9.8e-136 487.6 443 58.2
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 9.8e-136 487.6 433 58.0
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 2.8e-135 486.1 433 57.7
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 2.8e-135 486.1 444 55.6
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 8.3e-135 484.6 350 66.6
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 1.1e-134 484.2 443 55.3
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 2.0e-133 479.9 415 56.4
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.3e-132 477.2 350 65.1
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 3.3e-131 472.6 439 55.4
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 5.6e-131 471.9 443 54.6
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 7.3e-131 471.5 365 63.8
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.6e-130 470.3 442 55.9
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.1e-130 469.9 444 55.6
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 6.8e-129 464.9 354 65.8
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 7.3e-123 444.9 437 53.1
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.2e-119 433.3 324 64.2
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 4.9e-119 432.2 319 63.9
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 4.6e-109 399.1 349 58.5
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 4.0e-105 386.0 273 65.9
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 4.0e-105 386.0 273 65.9
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 4.4e-104 382.5 385 54.0
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 1.9e-91 340.5 384 47.9
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 5.8e-88 328.9 377 48.0
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 8.2e-74 282.0 232 59.5
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 1.6e-66 257.7 192 64.6
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.1e-62 245.0 164 70.1
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 7.2e-62 242.3 330 44.2
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.6e-61 241.1 247 51.8
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 2.1e-61 240.7 149 76.5
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 7.9e-53 212.2 258 46.1
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 4.1e-41 173.3 106 75.5
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 1.4e-36 158.3 147 53.7
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 1.5e-30 138.3 138 54.3
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 3.4e-27 127.1 110 62.7
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 3.7e-26 123.6 111 60.4
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 4.5e-24 116.7 95 56.8
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 2.0e-11 74.7 52 59.6
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 7.3e-06 56.2 54 44.4
Sp3g14030 Schrenkiella parvula HOM05D000076 ORTHO05D006651 9.5e-06 55.8 323 23.8


User provided reference genes

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