Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 2.7e-80 302.0 156 100.0
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 4.3e-30 135.2 119 65.5
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 9.7e-30 134.0 123 65.0
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 1.7e-29 133.3 126 65.1
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 5.3e-28 128.3 129 62.0
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 2.0e-27 126.3 150 56.7
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.7e-26 123.2 119 58.8
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 3.2e-25 119.0 112 63.4
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 7.2e-25 117.9 119 58.0
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.2e-24 117.1 119 59.7
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 2.1e-24 116.3 119 58.8
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.1e-24 116.3 119 58.8
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 2.7e-24 115.9 122 59.0
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 4.7e-24 115.2 121 59.5
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.1e-24 114.8 119 58.8
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.0e-23 114.0 124 58.1
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 1.0e-23 114.0 119 59.7
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 3.0e-23 112.5 119 56.3
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 6.7e-23 111.3 122 58.2
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 1.1e-22 110.5 123 56.9
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.1e-22 110.5 119 58.8
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 1.1e-22 110.5 123 56.9
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 2.0e-22 109.8 119 57.1
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 3.3e-22 109.0 119 55.5
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 3.3e-22 109.0 119 54.6
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.7e-22 108.2 123 57.7
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 7.4e-22 107.8 119 57.1
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 7.4e-22 107.8 124 57.3
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 9.7e-22 107.5 120 57.5
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.3e-21 107.1 120 55.0
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.3e-21 107.1 123 56.9
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.7e-21 106.7 120 57.5
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.8e-21 105.1 123 56.9
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 8.2e-21 104.4 120 56.7
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 8.2e-21 104.4 117 60.7
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 8.2e-21 104.4 119 57.1
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 1.1e-20 104.0 119 54.6
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 1.8e-20 103.2 119 55.5
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 2.4e-20 102.8 122 54.9
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 2.4e-20 102.8 119 57.1
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 2.4e-20 102.8 119 57.1
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 3.1e-20 102.4 119 56.3
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 3.1e-20 102.4 122 56.6
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 4.1e-20 102.1 135 51.1
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 9.1e-20 100.9 119 55.5
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.5e-19 100.1 122 53.3
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 1.5e-19 100.1 120 54.2
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.5e-19 100.1 119 55.5
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 3.5e-19 99.0 121 55.4
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 5.9e-19 98.2 120 51.7
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 5.9e-19 98.2 123 56.1
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 7.7e-19 97.8 122 52.5
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 7.7e-19 97.8 122 52.5
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.0e-18 97.4 119 54.6
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.2e-18 96.3 109 54.1
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 2.9e-18 95.9 120 52.5
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 3.8e-18 95.5 104 54.8
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 3.8e-18 95.5 118 52.5
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 3.8e-18 95.5 109 54.1
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.0e-18 95.1 115 50.4
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 5.0e-18 95.1 145 46.9
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 5.0e-18 95.1 119 51.3
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 8.5e-18 94.4 119 51.3
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 8.5e-18 94.4 117 52.1
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.1e-17 94.0 115 49.6
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 1.4e-17 93.6 127 51.2
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.5e-17 92.8 118 51.7
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 4.2e-17 92.0 117 55.6
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 7.2e-17 91.3 121 52.1
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 7.2e-17 91.3 127 50.4
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 7.2e-17 91.3 117 54.7
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 9.4e-17 90.9 123 52.0
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 9.4e-17 90.9 121 53.7
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 1.2e-16 90.5 117 55.6
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.6e-16 90.1 113 51.3
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 2.1e-16 89.7 120 50.0
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 2.7e-16 89.4 121 53.7
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.6e-16 89.0 126 50.0
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 3.6e-16 89.0 121 50.4
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 8.0e-16 87.8 123 52.8
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 8.0e-16 87.8 123 52.8
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 8.0e-16 87.8 120 48.3
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 8.0e-16 87.8 120 48.3
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 8.0e-16 87.8 120 48.3
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 8.0e-16 87.8 117 53.8
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 1.0e-15 87.4 115 51.3
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 1.0e-15 87.4 118 49.2
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.8e-15 86.7 104 54.8
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 1.8e-15 86.7 129 51.9
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.8e-15 86.7 113 49.6
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 3.9e-15 85.5 113 50.4
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 5.2e-15 85.1 122 50.0
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 6.7e-15 84.7 118 49.2
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 6.7e-15 84.7 111 52.3
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 6.7e-15 84.7 111 52.3
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 8.8e-15 84.3 117 48.7
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 1.5e-14 83.6 116 50.0
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 1.5e-14 83.6 121 47.9
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.0e-14 83.2 113 46.0
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 4.4e-14 82.0 113 49.6
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 4.4e-14 82.0 117 48.7
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 4.4e-14 82.0 117 48.7
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 4.4e-14 82.0 117 48.7
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 5.7e-14 81.6 118 44.9
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 5.7e-14 81.6 123 48.8
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 9.7e-14 80.9 119 45.4
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.3e-13 80.5 116 50.0
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 2.8e-13 79.3 111 48.6
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 6.3e-13 78.2 124 41.9
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 1.4e-12 77.0 111 46.8
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 1.4e-12 77.0 155 39.4
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 2.4e-12 76.3 111 42.3
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 2.4e-12 76.3 114 44.7
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 3.1e-12 75.9 111 41.4
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 5.3e-12 75.1 117 41.9
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 7.0e-12 74.7 128 44.5
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 7.0e-12 74.7 115 44.3
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.9e-10 69.3 120 40.8
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 3.8e-10 68.9 108 46.3
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 3.8e-10 68.9 197 32.5
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 8.5e-10 67.8 103 46.6
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 3.2e-09 65.9 83 50.6
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 3.2e-09 65.9 108 45.4
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 5.5e-09 65.1 117 45.3
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 7.2e-09 64.7 74 54.1
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 2.1e-08 63.2 81 45.7
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 2.7e-08 62.8 68 57.4
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 6.1e-08 61.6 34 88.2
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 8.0e-08 61.2 81 44.4
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.0e-07 60.8 74 54.1
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.0e-07 60.8 74 54.1
HPP92_003218 Vanilla planifolia HOM05D004934 ORTHO05D005924 1.0e-07 60.8 35 82.9
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 4.0e-07 58.9 35 80.0
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.2e-07 58.5 81 43.2
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 8.8e-07 57.8 86 46.5
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 8.8e-07 57.8 75 49.3
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 8.8e-07 57.8 112 41.1
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 5.7e-06 55.1 83 41.0


User provided reference genes

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