Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold295G47519 Striga asiatica HOM05D004622 ORTHO05D005431 1.8e-84 315.8 158 100.0
SGA_v2.0_scaffold177G39416 Striga asiatica HOM05D004622 ORTHO05D005431 4.7e-32 141.7 137 61.3
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 5.4e-20 101.7 72 70.8
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 1.0e-18 97.4 91 56.0
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 1.3e-18 97.1 120 47.5
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 3.9e-18 95.5 100 54.0
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 3.9e-18 95.5 107 55.1
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 5.0e-18 95.1 111 45.9
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 5.0e-18 95.1 136 45.6
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 6.6e-18 94.7 111 45.9
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 8.6e-18 94.4 73 64.4
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 8.6e-18 94.4 126 43.7
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 1.1e-17 94.0 115 51.3
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 1.5e-17 93.6 69 63.8
Gohir.A09G096001 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.5e-17 93.6 96 50.0
RcHm_v2.0_Chr5g0045661 Rosa chinensis HOM05D004622 ORTHO05D005431 1.5e-17 93.6 69 65.2
RcHm_v2.0_Chr5g0046341 Rosa chinensis HOM05D004622 ORTHO05D005431 1.5e-17 93.6 69 65.2
FvH4_3g25120 Fragaria vesca HOM05D004622 ORTHO05D005431 1.9e-17 93.2 69 63.8
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 2.5e-17 92.8 104 55.8
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 2.5e-17 92.8 76 61.8
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 2.5e-17 92.8 70 65.7
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 5.6e-17 91.7 76 64.5
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 5.6e-17 91.7 108 52.8
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 5.6e-17 91.7 119 47.9
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 5.6e-17 91.7 107 48.6
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 7.3e-17 91.3 91 57.1
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 9.5e-17 90.9 75 58.7
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 9.5e-17 90.9 75 64.0
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 1.2e-16 90.5 146 41.1
Gohir.D09G095666 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.2e-16 90.5 96 49.0
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 1.2e-16 90.5 69 65.2
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 1.2e-16 90.5 69 65.2
Migut.N02485 Erythranthe guttata HOM05D004622 ORTHO05D005431 1.6e-16 90.1 93 53.8
MSTRG.12372 Avicennia marina HOM05D004622 ORTHO05D005431 2.1e-16 89.7 114 49.1
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 2.1e-16 89.7 84 56.0
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 2.8e-16 89.4 141 44.7
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 2.8e-16 89.4 164 38.4
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 2.8e-16 89.4 125 48.0
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 2.8e-16 89.4 120 45.0
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.8e-16 89.4 69 66.7
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 4.7e-16 88.6 109 50.5
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 4.7e-16 88.6 112 50.9
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 6.2e-16 88.2 90 56.7
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 6.2e-16 88.2 76 63.2
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 8.1e-16 87.8 103 52.4
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 1.1e-15 87.4 79 59.5
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 1.1e-15 87.4 121 45.5
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 1.1e-15 87.4 118 45.8
Lalb_Chr03g0028141 Lupinus albus HOM05D004622 ORTHO05D005431 1.4e-15 87.0 118 45.8
ATR0820G124 Amborella trichopoda HOM05D004622 ORTHO05D005431 2.3e-15 86.3 78 59.0
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 2.3e-15 86.3 71 63.4
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 2.3e-15 86.3 125 44.0
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 3.1e-15 85.9 94 51.1
Nn2g14192 Nelumbo nucifera HOM05D004622 ORTHO05D005431 3.1e-15 85.9 112 47.3
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 3.1e-15 85.9 75 62.7
Sc21g0007040 Simmondsia chinensis HOM05D004622 ORTHO05D005431 3.1e-15 85.9 79 53.2
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 3.1e-15 85.9 101 52.5
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 5.2e-15 85.1 96 56.2
TAR633G0983 Trochodendron aralioides HOM05D004622 ORTHO05D005431 5.2e-15 85.1 77 58.4
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 6.8e-15 84.7 80 51.2
Nitab4.5_0003661g0010 Nicotiana tabacum HOM05D004622 ORTHO05D005431 6.8e-15 84.7 58 70.7
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 8.9e-15 84.3 91 51.6
unitig_27.g25015 Utricularia gibba HOM05D004622 ORTHO05D005431 8.9e-15 84.3 146 39.0
Eucgr.B03842 Eucalyptus grandis HOM05D004622 ORTHO05D005431 1.2e-14 84.0 81 56.8
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 1.2e-14 84.0 108 49.1
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 2.0e-14 83.2 107 48.6
Medtr4g052880 Medicago truncatula HOM05D004622 ORTHO05D005431 2.0e-14 83.2 101 44.6
Oeu034007.1 Olea europaea HOM05D004622 ORTHO05D005431 2.0e-14 83.2 117 48.7
Atru.chr3.3214 Acer truncatum HOM05D004622 ORTHO05D005431 2.6e-14 82.8 117 47.0
CsaV3_1G015000 Cucumis sativus L. HOM05D004622 ORTHO05D005431 3.4e-14 82.4 80 50.0
CsaV3_1G015910 Cucumis sativus L. HOM05D004622 ORTHO05D005431 3.4e-14 82.4 80 50.0
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 3.4e-14 82.4 76 52.6
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 4.4e-14 82.0 71 53.5
Sabra09G0127000 Salix brachista HOM05D004622 ORTHO05D005431 4.4e-14 82.0 101 47.5
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 7.5e-14 81.3 66 62.1
SGA_v2.0_scaffold22G09855 Striga asiatica HOM05D004622 ORTHO05D005431 9.8e-14 80.9 62 66.1
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 1.3e-13 80.5 113 45.1
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.3e-13 80.5 138 41.3
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 1.7e-13 80.1 89 52.8
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 1.7e-13 80.1 121 43.0
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 1.7e-13 80.1 83 54.2
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 2.2e-13 79.7 84 52.4
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 3.7e-13 79.0 76 48.7
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 3.7e-13 79.0 143 37.1
Solyc06g074270.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 3.7e-13 79.0 94 52.1
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 4.9e-13 78.6 108 44.4
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 4.9e-13 78.6 76 51.3
CDE04G1878 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 6.4e-13 78.2 76 56.6
CsaV3_6G038370 Cucumis sativus L. HOM05D004622 ORTHO05D005431 6.4e-13 78.2 99 51.5
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 8.3e-13 77.8 104 46.2
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 1.1e-12 77.4 72 52.8
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 1.4e-12 77.0 67 59.7
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 1.4e-12 77.0 93 46.2
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 1.4e-12 77.0 99 47.5
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 1.9e-12 76.6 99 43.4
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 1.9e-12 76.6 94 48.9
TPR.G17219 Trifolium pratense HOM05D004622 ORTHO05D005431 1.9e-12 76.6 93 46.2
unitig_699.g19154 Utricularia gibba HOM05D004622 ORTHO05D005431 1.9e-12 76.6 119 43.7
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 3.2e-12 75.9 72 51.4
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 3.2e-12 75.9 99 46.5
ClCG02G022240 Citrullus lanatus HOM05D004622 ORTHO05D005431 4.1e-12 75.5 107 45.8
MELO3C014501.2 Cucumis melo HOM05D004622 ORTHO05D005431 4.1e-12 75.5 100 46.0
Potri.004G201500 Populus trichocarpa HOM05D004622 ORTHO05D005431 2.7e-11 72.8 110 41.8
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 2.7e-11 72.8 109 39.4
Migut.D02437 Erythranthe guttata HOM05D004622 ORTHO05D005431 7.8e-11 71.2 115 40.0
CAN.G919.33 Capsicum annuum HOM05D004622 ORTHO05D005431 1.3e-10 70.5 66 57.6
DCAR_006166 Daucus carota HOM05D004622 ORTHO05D005431 1.7e-10 70.1 58 58.6
arahy.Tifrunner.gnm1.ann1.72VZ3I Arachis hypogaea HOM05D004622 ORTHO05D005431 3.0e-10 69.3 54 63.0
Zm00001eb092610 Zea mays HOM05D004622 ORTHO05D005431 3.0e-10 69.3 53 62.3
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 3.9e-10 68.9 132 39.4
SalBow3G2592 Salvia bowleyana HOM05D004622 ORTHO05D005431 6.6e-10 68.2 91 47.3
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 8.6e-10 67.8 111 38.7
Zm00001eb242780 Zea mays HOM05D004622 ORTHO05D005431 8.6e-10 67.8 60 55.0
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 1.1e-09 67.4 74 47.3
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 1.1e-09 67.4 136 35.3
EL10Ac7g15833 Beta vulgaris HOM05D004622 ORTHO05D005431 3.3e-09 65.9 100 42.0
Lsat_1_v5_gn_6_38921 Lactuca sativa HOM05D000892 ORTHO05D000750 4.3e-09 65.5 80 52.5
Os02g0534000 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 7.3e-09 64.7 58 53.4
HPP92_003213 Vanilla planifolia HOM05D004622 ORTHO05D005431 7.3e-09 64.7 70 48.6
DCAR_000195 Daucus carota HOM05D004622 ORTHO05D005431 1.6e-08 63.5 78 50.0
Lsat_1_v5_gn_1_59220 Lactuca sativa HOM05D004622 ORTHO05D005431 6.2e-08 61.6 118 41.5
Os11g0153500 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 8.1e-08 61.2 53 56.6
Os12g0155100 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 1.1e-07 60.8 99 38.4
CANSAT54G0218 Cannabis sativa HOM05D006966 ORTHO05D008111 1.8e-07 60.1 79 40.5
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 1.8e-07 60.1 94 38.3
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 1.8e-07 60.1 94 48.9
FAN21G1025 Fragaria x ananassa HOM05D004622 ORTHO05D005431 2.3e-07 59.7 37 64.9
VMungo0540G1150 Vigna mungo HOM05D006966 ORTHO05D008111 4.0e-07 58.9 84 38.1
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 5.2e-07 58.5 73 45.2
Os04g0413100 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 5.2e-07 58.5 62 50.0
Psat5g258080 Pisum sativum HOM05D004622 ORTHO05D005431 5.2e-07 58.5 53 52.8
Aqoxy4G02752 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 6.8e-07 58.2 78 39.7
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.8e-07 58.2 85 43.5
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.8e-07 58.2 85 43.5
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 6.8e-07 58.2 77 41.6
ATR0580G269 Amborella trichopoda HOM05D006966 ORTHO05D008111 8.9e-07 57.8 86 38.4
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 8.9e-07 57.8 82 39.0
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 8.9e-07 57.8 73 45.2
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 8.9e-07 57.8 73 45.2
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 8.9e-07 57.8 73 45.2
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 8.9e-07 57.8 73 45.2
Glyma.19G238400 Glycine max HOM05D006966 ORTHO05D008111 8.9e-07 57.8 96 36.5
Glyma.03G240900 Glycine max HOM05D006966 ORTHO05D008111 1.2e-06 57.4 97 35.1
FAN25G2155 Fragaria x ananassa HOM05D004622 ORTHO05D005431 1.5e-06 57.0 35 65.7
Rhsim05G0145100 Rhododendron simsii HOM05D006966 ORTHO05D008111 2.0e-06 56.6 90 38.9
CDE05G1565 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 2.6e-06 56.2 72 43.1
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 2.6e-06 56.2 86 38.4
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 2.6e-06 56.2 84 40.5
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.6e-06 56.2 63 47.6
TPR.G4535 Trifolium pratense HOM05D004622 ORTHO05D005431 2.6e-06 56.2 101 39.6
Zm00001eb083800 Zea mays HOM05D004622 ORTHO05D005431 3.4e-06 55.8 62 46.8
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 4.4e-06 55.5 88 37.5
Aqoxy4G02755 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 5.8e-06 55.1 72 47.2


User provided reference genes

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