Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 0.0e+00 1114.0 571 100.0
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 2.4e-267 925.2 569 83.7
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.6e-258 895.2 572 79.4
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 2.2e-249 865.5 565 77.9
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 1.7e-233 812.8 585 71.5
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 5.0e-233 811.2 602 71.3
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 2.5e-232 808.9 562 72.8
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 8.8e-230 800.4 570 71.2
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.8e-228 794.7 551 71.7
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 4.8e-228 794.7 570 70.5
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 6.3e-228 794.3 569 70.5
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 8.2e-228 793.9 551 71.7
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.1e-227 792.0 569 70.5
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 9.1e-227 790.4 552 71.0
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.2e-226 790.0 569 70.3
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 2.6e-226 788.9 569 69.2
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 3.5e-226 788.5 571 70.1
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.9e-225 785.4 569 71.0
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.1e-224 783.5 565 69.7
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.9e-224 782.7 554 72.4
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.2e-224 781.9 562 70.3
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 8.0e-223 777.3 552 70.8
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.4e-222 776.5 572 68.2
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 5.2e-222 774.6 554 69.5
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 8.8e-222 773.9 558 70.4
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 2.0e-221 772.7 564 69.0
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 5.7e-221 771.2 551 70.2
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 7.5e-221 770.8 553 69.4
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 7.5e-221 770.8 557 70.0
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 9.7e-221 770.4 557 69.5
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 9.7e-221 770.4 603 65.5
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.7e-220 769.6 552 70.5
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.8e-220 768.8 563 68.9
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 3.7e-220 768.5 558 68.6
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.7e-220 768.5 557 69.8
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 3.7e-220 768.5 552 70.8
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 4.8e-220 768.1 560 70.4
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.8e-219 766.1 552 70.5
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 2.4e-219 765.8 557 69.3
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 5.3e-219 764.6 552 70.3
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 5.3e-219 764.6 552 69.7
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 9.1e-219 763.8 558 68.8
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 2.7e-218 762.3 561 68.4
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 3.5e-218 761.9 561 69.2
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 4.5e-218 761.5 555 69.0
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 4.5e-218 761.5 555 68.1
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.5e-218 761.5 552 69.7
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.5e-218 761.5 552 70.1
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 5.9e-218 761.1 552 69.9
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.0e-217 760.4 552 69.2
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 2.2e-217 759.2 551 69.3
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 2.2e-217 759.2 557 67.7
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 5.0e-217 758.1 552 69.4
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.1e-216 756.9 555 67.0
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.1e-216 756.9 551 69.0
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 1.1e-216 756.9 555 67.7
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.9e-216 756.1 558 68.8
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.2e-216 755.0 551 69.0
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.2e-215 753.4 575 67.0
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 1.2e-215 753.4 552 68.7
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.6e-215 753.1 558 68.8
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 4.7e-215 751.5 551 69.1
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 6.1e-215 751.1 569 66.1
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 6.1e-215 751.1 566 66.6
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 8.0e-215 750.7 552 67.0
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 8.0e-215 750.7 554 69.0
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 1.0e-214 750.4 557 68.0
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.0e-214 748.8 495 76.6
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 5.2e-214 748.0 554 66.2
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 6.8e-214 747.7 566 66.3
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 8.8e-214 747.3 555 67.0
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 8.8e-214 747.3 552 68.3
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.2e-213 746.9 625 62.4
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.0e-213 746.1 612 63.9
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 2.6e-213 745.7 575 65.4
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 4.4e-213 745.0 554 68.6
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.4e-213 745.0 573 67.2
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 5.7e-213 744.6 555 66.8
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.7e-213 744.6 575 66.8
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 2.8e-212 742.3 553 68.7
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 1.4e-211 740.0 549 67.9
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 2.4e-211 739.2 584 66.4
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 3.1e-211 738.8 568 66.5
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 4.1e-211 738.4 556 67.3
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 7.0e-211 737.6 560 67.0
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 2.0e-210 736.1 566 65.7
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 6.6e-209 731.1 560 66.4
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 8.6e-209 730.7 549 67.2
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 1.1e-208 730.3 549 67.2
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 1.1e-208 730.3 549 67.6
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.5e-208 729.9 549 67.4
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.9e-208 729.6 558 66.3
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 2.5e-208 729.2 551 67.0
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 3.3e-208 728.8 560 65.5
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 4.2e-208 728.4 551 67.2
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 5.5e-208 728.0 553 67.8
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.2e-207 726.9 560 65.9
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.2e-207 726.9 560 65.9
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.2e-207 726.9 560 65.9
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 4.7e-207 724.9 559 65.8
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 6.1e-207 724.5 559 65.7
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 8.0e-207 724.2 531 66.7
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.0e-206 723.8 551 66.1
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 2.3e-206 722.6 549 67.0
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 4.0e-206 721.8 549 67.0
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 8.9e-206 720.7 569 65.6
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 1.2e-205 720.3 522 68.8
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 9.8e-205 717.2 552 67.0
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 3.2e-203 712.2 554 65.7
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 2.9e-201 705.7 565 65.0
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.5e-200 703.4 603 61.5
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 6.8e-198 694.5 631 58.5
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 8.9e-198 694.1 565 63.5
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 3.4e-197 692.2 566 62.2
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 4.6e-194 681.8 551 63.0
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.5e-189 666.8 494 67.4
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 1.0e-185 654.1 553 60.2
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 1.7e-185 653.3 453 72.6
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 5.1e-185 651.7 570 61.4
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.4e-179 632.9 525 60.0
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.3e-172 610.5 554 59.0
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.5e-168 596.3 475 64.2
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 9.6e-168 594.3 551 54.8
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.8e-166 590.1 551 55.5
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 7.6e-165 584.7 434 67.5
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.4e-163 580.5 361 81.2
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 6.6e-161 571.6 557 54.0
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 7.4e-152 541.6 409 66.7
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 8.1e-151 538.1 409 66.5
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 2.4e-150 536.6 412 66.5
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 7.1e-147 525.0 377 69.2
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 5.1e-129 465.7 553 45.9
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 6.3e-127 458.8 347 66.9
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 2.0e-117 427.2 537 42.8
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-115 420.6 359 61.0
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.3e-103 381.3 251 74.5
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.3e-92 344.0 220 75.5
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 2.7e-77 293.9 215 66.0
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.4e-70 270.8 178 78.7
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 1.1e-57 228.8 214 56.5
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 2.4e-49 201.1 152 65.1
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 3.2e-46 190.7 147 66.0
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.7e-39 168.3 137 62.0
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 6.0e-37 159.8 120 64.2
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 6.2e-34 149.8 115 64.3
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.1e-22 112.5 112 56.2
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 5.7e-19 100.1 109 49.5
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 2.4e-17 94.7 82 58.5
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 4.1e-17 94.0 99 47.5
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.5e-16 92.0 106 54.7
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 3.8e-15 87.4 81 54.3
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.8e-15 87.4 101 43.6
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 4.5e-08 63.9 53 54.7
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 5.0e-07 60.5 343 23.9
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 3.2e-06 57.8 112 34.8
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 5.5e-06 57.0 235 28.1


User provided reference genes

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