Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 8.0e-71 270.4 145 100.0
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 4.9e-28 128.3 108 61.1
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 5.1e-25 118.2 108 59.3
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 5.6e-24 114.8 108 58.3
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.3e-23 113.6 108 58.3
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 4.8e-23 111.7 109 56.0
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 6.2e-23 111.3 108 56.5
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 1.1e-22 110.5 108 55.6
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 1.4e-22 110.2 108 55.6
SGA_v2.0_scaffold177G39452 Striga asiatica HOM05D003660 ORTHO05D003415 3.1e-22 109.0 118 58.5
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 5.3e-22 108.2 109 56.0
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 5.3e-22 108.2 108 56.5
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 5.3e-22 108.2 108 54.6
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 2.0e-21 106.3 109 55.0
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 2.0e-21 106.3 109 55.0
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 2.6e-21 105.9 109 53.2
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 2.6e-21 105.9 108 53.7
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 2.6e-21 105.9 127 47.2
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 2.6e-21 105.9 108 53.7
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 2.6e-21 105.9 108 53.7
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 3.4e-21 105.5 108 51.9
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 3.4e-21 105.5 108 50.9
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 5.8e-21 104.8 98 56.1
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 5.8e-21 104.8 108 53.7
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 5.8e-21 104.8 108 54.6
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 7.6e-21 104.4 108 51.9
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.0e-20 104.0 108 53.7
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 1.7e-20 103.2 104 52.9
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 2.2e-20 102.8 108 52.8
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 2.2e-20 102.8 108 52.8
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 2.2e-20 102.8 108 52.8
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 2.9e-20 102.4 109 51.4
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 2.9e-20 102.4 109 52.3
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 2.9e-20 102.4 108 56.5
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 4.9e-20 101.7 108 52.8
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 6.5e-20 101.3 109 54.1
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 6.5e-20 101.3 108 52.8
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 6.5e-20 101.3 109 52.3
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 1.4e-19 100.1 125 48.8
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 2.5e-19 99.4 109 52.3
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.5e-19 99.4 109 52.3
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.5e-19 99.4 109 52.3
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 2.5e-19 99.4 108 52.8
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 3.2e-19 99.0 108 51.9
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 3.2e-19 99.0 108 51.9
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 5.5e-19 98.2 108 50.0
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 5.5e-19 98.2 109 50.5
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 7.1e-19 97.8 109 49.5
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 7.1e-19 97.8 108 50.9
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 9.3e-19 97.4 108 49.1
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.2e-18 97.1 107 50.5
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 2.1e-18 96.3 109 51.4
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 2.1e-18 96.3 95 55.8
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 2.7e-18 95.9 107 48.6
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 3.5e-18 95.5 109 52.3
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 7.9e-18 94.4 108 47.2
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.8e-17 93.2 108 48.1
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 2.3e-17 92.8 130 42.3
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 3.0e-17 92.4 109 45.9
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.0e-17 92.4 108 48.1
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 3.0e-17 92.4 109 47.7
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 3.9e-17 92.0 109 45.9
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 3.9e-17 92.0 109 49.5
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 5.1e-17 91.7 108 47.2
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 5.1e-17 91.7 86 58.1
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 6.7e-17 91.3 108 45.4
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 8.7e-17 90.9 108 44.4
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 8.7e-17 90.9 108 47.2
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.1e-16 90.5 110 51.8
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 1.1e-16 90.5 79 59.5
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.9e-16 89.7 108 49.1
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.9e-16 89.7 97 52.6
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 1.9e-16 89.7 108 50.0
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.5e-16 89.4 108 49.1
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.5e-16 89.4 108 49.1
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 3.3e-16 89.0 108 45.4
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 4.3e-16 88.6 80 61.2
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 9.7e-16 87.4 108 44.4
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 1.3e-15 87.0 92 53.3
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.6e-15 86.7 111 43.2
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.6e-15 86.7 109 46.8
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 2.2e-15 86.3 108 41.7
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 2.2e-15 86.3 108 43.5
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 2.8e-15 85.9 102 50.0
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.8e-15 85.1 108 41.7
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.8e-15 85.1 108 41.7
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 4.8e-15 85.1 108 41.7
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 1.4e-14 83.6 108 44.4
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 2.4e-14 82.8 75 60.0
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 4.1e-14 82.0 101 45.5
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 4.1e-14 82.0 98 51.0
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 4.1e-14 82.0 108 41.7
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 6.9e-14 81.3 89 50.6
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 6.9e-14 81.3 79 57.0
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 6.9e-14 81.3 102 46.1
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 6.9e-14 81.3 80 53.8
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.5e-13 80.1 109 43.1
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.5e-13 80.1 109 44.0
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 2.0e-13 79.7 108 45.4
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 2.6e-13 79.3 109 45.0
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 3.4e-13 79.0 121 43.0
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 4.5e-13 78.6 109 45.9
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 7.7e-13 77.8 117 40.2
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.0e-12 77.4 107 44.9
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 1.0e-12 77.4 109 42.2
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.3e-12 77.0 85 51.8
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 1.3e-12 77.0 110 42.7
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 1.3e-12 77.0 110 42.7
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.3e-12 77.0 112 45.5
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 1.7e-12 76.6 109 44.0
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 2.2e-12 76.3 109 44.0
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 2.2e-12 76.3 108 44.4
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 2.9e-12 75.9 109 45.0
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 2.9e-12 75.9 107 43.9
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 3.8e-12 75.5 108 43.5
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 3.8e-12 75.5 108 43.5
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 3.8e-12 75.5 108 43.5
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 3.8e-12 75.5 109 45.0
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 3.8e-12 75.5 79 49.4
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 5.0e-12 75.1 108 44.4
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 5.0e-12 75.1 109 45.0
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 5.0e-12 75.1 110 41.8
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 6.5e-12 74.7 109 45.0
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 8.5e-12 74.3 109 45.0
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 8.5e-12 74.3 91 50.5
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.1e-11 73.9 112 42.9
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 1.1e-11 73.9 107 40.2
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.9e-11 73.2 79 50.6
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 1.9e-11 73.2 110 40.9
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 2.5e-11 72.8 108 42.6
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.2e-11 72.4 108 43.5
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 4.2e-11 72.0 109 42.2
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 5.5e-11 71.6 99 44.4
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 5.5e-11 71.6 106 42.5
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 9.4e-11 70.9 107 43.9
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 1.2e-10 70.5 109 44.0
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 1.2e-10 70.5 108 35.2
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 1.2e-10 70.5 92 42.4
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.6e-10 70.1 88 45.5
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.6e-10 70.1 88 45.5
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 1.6e-10 70.1 108 41.7
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 2.7e-10 69.3 77 51.9
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 2.7e-10 69.3 108 42.6
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 2.7e-10 69.3 128 35.2
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 6.1e-10 68.2 88 44.3
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 6.1e-10 68.2 108 41.7
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 7.9e-10 67.8 76 50.0
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 7.9e-10 67.8 114 42.1
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 1.0e-09 67.4 87 43.7
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.8e-09 66.6 88 43.2
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.8e-09 66.6 119 37.8
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 6.7e-09 64.7 109 42.2
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 1.5e-08 63.5 69 52.2
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.5e-08 63.5 111 39.6
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.0e-08 63.2 108 31.5
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 5.7e-08 61.6 86 43.0
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 5.7e-08 61.6 87 41.4
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 7.4e-08 61.2 108 36.1
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.7e-07 60.1 112 33.9
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 1.7e-07 60.1 115 38.3
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 3.7e-07 58.9 66 50.0
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 4.8e-07 58.5 83 41.0
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 6.3e-07 58.2 90 40.0
Pp3c9_5580 Physcomitrium patens HOM05D003660 ORTHO05D003415 8.2e-07 57.8 98 45.9
QL01p011704 Quercus lobata HOM05D003660 ORTHO05D003415 1.4e-06 57.0 52 59.6
QL07p037620 Quercus lobata HOM05D003660 ORTHO05D003415 1.4e-06 57.0 56 48.2
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.8e-06 56.6 81 44.4
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 4.1e-06 55.5 82 39.0
FvH4_6g19790 Fragaria vesca HOM05D003660 ORTHO05D003415 4.1e-06 55.5 63 49.2
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 5.3e-06 55.1 98 38.8
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 5.3e-06 55.1 98 38.8
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 5.3e-06 55.1 81 40.7
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 6.9e-06 54.7 135 29.6
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 9.1e-06 54.3 103 36.9
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 9.1e-06 54.3 53 52.8


User provided reference genes

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