Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 5.7e-72 274.2 149 100.0
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 3.8e-23 112.1 123 62.6
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 1.4e-22 110.2 122 59.0
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 4.2e-22 108.6 122 58.2
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 4.2e-22 108.6 127 56.7
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 5.4e-22 108.2 127 57.5
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 9.3e-22 107.5 127 56.7
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 1.2e-21 107.1 127 55.9
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 1.6e-21 106.7 124 56.5
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 1.6e-21 106.7 124 56.5
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 1.6e-21 106.7 124 56.5
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 2.1e-21 106.3 124 56.5
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 4.6e-21 105.1 127 53.5
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 6.0e-21 104.8 131 53.4
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 6.0e-21 104.8 127 55.9
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 6.0e-21 104.8 127 55.9
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 7.8e-21 104.4 127 53.5
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 1.0e-20 104.0 131 55.7
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 1.0e-20 104.0 126 54.0
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 1.3e-20 103.6 127 55.1
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 1.3e-20 103.6 124 54.8
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 1.7e-20 103.2 127 55.1
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 1.7e-20 103.2 127 54.3
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 1.7e-20 103.2 127 54.3
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 1.7e-20 103.2 140 52.9
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 2.3e-20 102.8 127 55.9
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 2.3e-20 102.8 124 54.0
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 2.3e-20 102.8 127 54.3
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 3.0e-20 102.4 137 51.1
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 3.0e-20 102.4 122 55.7
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 3.9e-20 102.1 124 54.0
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 5.1e-20 101.7 127 53.5
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 5.1e-20 101.7 124 54.0
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 5.1e-20 101.7 140 52.9
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 6.6e-20 101.3 124 54.0
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 6.6e-20 101.3 122 54.9
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 6.6e-20 101.3 127 52.8
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 8.7e-20 100.9 127 53.5
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 8.7e-20 100.9 127 52.8
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 8.7e-20 100.9 127 52.8
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 8.7e-20 100.9 127 54.3
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 1.1e-19 100.5 131 51.9
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 1.1e-19 100.5 123 55.3
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 1.1e-19 100.5 122 54.9
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.1e-19 100.5 122 54.9
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.1e-19 100.5 122 54.9
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 1.1e-19 100.5 123 53.7
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 1.1e-19 100.5 127 51.2
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 1.5e-19 100.1 127 52.0
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.5e-19 100.1 124 54.0
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 1.5e-19 100.1 131 50.4
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 1.5e-19 100.1 127 52.0
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 1.9e-19 99.8 127 52.8
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 1.9e-19 99.8 127 52.8
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 2.5e-19 99.4 124 53.2
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 2.5e-19 99.4 127 55.1
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 4.3e-19 98.6 127 52.0
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 4.3e-19 98.6 146 48.6
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 5.6e-19 98.2 127 52.8
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 5.6e-19 98.2 127 52.0
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 1.3e-18 97.1 127 52.0
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 1.3e-18 97.1 124 53.2
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 1.6e-18 96.7 131 50.4
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 2.1e-18 96.3 127 50.4
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 2.1e-18 96.3 127 51.2
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 3.6e-18 95.5 131 48.9
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 3.6e-18 95.5 127 50.4
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 4.8e-18 95.1 127 51.2
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 4.8e-18 95.1 127 51.2
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 4.8e-18 95.1 127 51.2
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 6.2e-18 94.7 122 52.5
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 6.2e-18 94.7 140 50.0
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 6.2e-18 94.7 123 52.0
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 1.4e-17 93.6 127 49.6
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 1.4e-17 93.6 127 49.6
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 1.4e-17 93.6 122 51.6
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 1.8e-17 93.2 127 49.6
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 1.8e-17 93.2 127 49.6
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 1.8e-17 93.2 127 49.6
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 1.8e-17 93.2 127 50.4
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 1.8e-17 93.2 127 49.6
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 2.4e-17 92.8 127 50.4
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 4.0e-17 92.0 124 50.0
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 4.0e-17 92.0 127 49.6
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 5.3e-17 91.7 127 50.4
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 5.3e-17 91.7 127 48.8
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 5.3e-17 91.7 121 51.2
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 6.9e-17 91.3 118 53.4
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 9.0e-17 90.9 127 52.0
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 1.2e-16 90.5 127 49.6
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 1.5e-16 90.1 127 47.2
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 1.5e-16 90.1 127 47.2
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 2.0e-16 89.7 140 49.3
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 4.5e-16 88.6 125 48.0
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 7.6e-16 87.8 127 48.0
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 7.6e-16 87.8 123 50.4
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 1.3e-15 87.0 118 49.2
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 2.9e-15 85.9 127 48.0
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 1.1e-14 84.0 100 56.0
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 1.1e-14 84.0 118 49.2
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 3.2e-14 82.4 123 49.6
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 5.4e-14 81.6 122 48.4
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 7.1e-14 81.3 131 44.3
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 9.3e-14 80.9 127 47.2
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 2.7e-13 79.3 83 61.4
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 6.0e-13 78.2 123 48.8
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 8.7e-12 74.3 121 45.5
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.4e-09 67.0 55 65.5
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 1.8e-09 66.6 117 41.9
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 1.2e-08 63.9 120 40.8
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 5.8e-08 61.6 129 39.5
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 4.2e-06 55.5 121 38.0


User provided reference genes

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