Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 1.3e-224 782.7 393 100.0
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.9e-74 283.9 297 51.5
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.2e-71 274.6 409 44.5
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.7e-71 272.3 409 44.3
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 2.9e-67 260.0 232 58.2
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 4.0e-64 249.6 221 55.7
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 3.4e-63 246.5 281 47.0
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 8.3e-62 241.9 198 59.6
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 1.8e-61 240.7 298 43.6
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 7.0e-61 238.8 187 59.9
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 7.0e-61 238.8 198 57.6
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 2.0e-60 237.3 231 51.5
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.7e-59 234.2 155 71.0
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 6.6e-59 232.3 266 49.6
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 6.6e-59 232.3 270 48.1
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 6.6e-59 232.3 156 67.3
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.9e-58 230.7 261 49.4
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 3.3e-58 229.9 184 57.6
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 4.3e-58 229.6 165 62.4
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.3e-58 229.6 154 68.2
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 5.6e-58 229.2 198 55.6
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 5.6e-58 229.2 184 57.6
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 7.3e-58 228.8 152 68.4
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 9.5e-58 228.4 272 47.4
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 2.8e-57 226.9 196 58.2
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 3.6e-57 226.5 232 51.7
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.7e-57 226.1 154 67.5
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 1.8e-56 224.2 199 55.8
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 2.3e-56 223.8 164 64.0
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 2.3e-56 223.8 154 64.9
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 2.3e-56 223.8 154 64.9
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 2.3e-56 223.8 155 63.9
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 3.1e-56 223.4 222 50.0
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 5.2e-56 222.6 163 62.6
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 5.2e-56 222.6 164 64.0
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 5.2e-56 222.6 226 52.7
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 8.9e-56 221.9 213 53.5
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 8.9e-56 221.9 213 53.5
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 1.5e-55 221.1 198 54.5
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 2.0e-55 220.7 164 63.4
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 2.0e-55 220.7 164 63.4
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 2.0e-55 220.7 196 55.6
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 2.6e-55 220.3 155 65.8
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.6e-55 220.3 155 65.8
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.4e-55 219.9 155 65.8
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 4.4e-55 219.5 158 63.3
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 5.8e-55 219.2 160 63.1
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.3e-54 218.0 153 66.7
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.3e-54 218.0 153 66.7
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.3e-54 218.0 153 66.7
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.7e-54 217.6 212 52.8
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.9e-53 214.2 283 43.8
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 2.4e-53 213.8 159 61.6
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 2.4e-53 213.8 152 65.1
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 3.2e-53 213.4 156 60.9
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 3.2e-53 213.4 156 61.5
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 4.1e-53 213.0 154 64.3
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 7.0e-53 212.2 193 53.4
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 7.0e-53 212.2 284 43.7
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 9.2e-53 211.8 167 58.1
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 9.2e-53 211.8 192 53.1
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 9.2e-53 211.8 153 62.1
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 3.5e-52 209.9 157 60.5
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 3.5e-52 209.9 173 55.5
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 3.5e-52 209.9 170 56.5
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 3.5e-52 209.9 158 63.9
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 4.6e-52 209.5 152 63.2
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 6.0e-52 209.1 164 58.5
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 6.0e-52 209.1 164 58.5
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 1.3e-51 208.0 218 48.6
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 6.6e-51 205.7 164 56.7
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 6.6e-51 205.7 300 42.3
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 6.6e-51 205.7 156 59.0
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.5e-50 204.5 157 59.2
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.5e-50 204.5 157 59.2
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.9e-50 204.1 152 57.2
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 2.5e-50 203.8 164 57.9
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.5e-50 203.8 157 59.2
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 3.3e-50 203.4 192 53.6
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 3.3e-50 203.4 184 53.8
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.3e-50 203.4 149 61.1
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 4.3e-50 203.0 164 56.7
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 9.5e-50 201.8 149 60.4
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 9.5e-50 201.8 155 59.4
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 9.5e-50 201.8 155 59.4
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 9.5e-50 201.8 155 59.4
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 9.5e-50 201.8 155 59.4
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 6.2e-49 199.1 144 61.8
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 5.2e-48 196.1 158 57.6
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 6.8e-48 195.7 218 51.8
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 8.9e-48 195.3 137 65.0
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 9.9e-47 191.8 143 60.1
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.7e-46 191.0 150 58.0
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 4.9e-46 189.5 164 54.9
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 8.3e-46 188.7 203 48.8
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 1.1e-45 188.3 152 57.2
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 1.4e-45 188.0 181 50.3
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.4e-45 188.0 141 58.9
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.6e-44 184.5 141 58.2
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.0e-43 181.8 236 43.2
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.7e-43 181.0 161 50.3
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 5.1e-43 179.5 236 47.9
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.5e-42 177.9 171 55.6
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 5.6e-42 176.0 143 55.9
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 1.2e-41 174.9 134 59.0
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.6e-41 174.5 156 55.8
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.8e-40 171.0 136 56.6
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 2.4e-40 170.6 133 57.1
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 5.2e-40 169.5 158 51.9
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 6.8e-40 169.1 248 43.1
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 1.5e-39 167.9 199 46.7
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 3.4e-39 166.8 132 60.6
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.1e-37 161.8 196 46.4
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.4e-37 161.4 156 49.4
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 9.2e-37 158.7 194 44.3
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 3.9e-35 153.3 99 66.7
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 5.1e-35 152.9 133 51.9
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 9.6e-34 148.7 102 62.7
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 2.4e-32 144.1 98 63.3
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 3.1e-32 143.7 99 64.6
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.2e-31 141.7 120 55.8
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 2.2e-30 137.5 164 45.7
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 2.2e-30 137.5 164 45.7
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 2.9e-30 137.1 102 57.8
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.9e-29 134.4 99 58.6
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 1.3e-27 128.3 156 39.1
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 1.7e-27 127.9 134 46.3
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 9.6e-26 122.1 102 55.9
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 9.6e-26 122.1 103 52.4
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 4.2e-21 106.7 79 60.8
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 1.0e-19 102.1 78 57.7
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 1.3e-17 95.1 121 44.6
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.6e-17 94.7 70 61.4
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 1.1e-16 92.0 55 69.1
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.4e-16 90.9 66 63.6
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 4.0e-16 90.1 60 66.7
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 6.9e-16 89.4 70 58.6
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 9.0e-16 89.0 72 54.2
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.5e-15 88.2 86 50.0
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.6e-15 87.4 55 72.7
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 7.6e-15 85.9 90 53.3
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 1.7e-14 84.7 65 60.0
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 2.9e-14 84.0 71 59.2
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 1.4e-13 81.6 64 56.2
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 3.0e-11 73.9 42 73.8
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 5.1e-11 73.2 95 42.1
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 6.7e-11 72.8 61 57.4
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 6.7e-11 72.8 95 42.1
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 9.0e-08 62.4 47 55.3
MCO02G309 Micromonas commoda HOM05D004639 ORTHO05D005201 4.5e-07 60.1 157 29.9
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 1.0e-06 58.9 103 39.8
MCO10G304 Micromonas commoda HOM05D046594 ORTHO05D005201 1.7e-06 58.2 88 35.2


User provided reference genes

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