Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 8.8e-72 273.5 134 100.0
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 3.6e-57 224.9 135 86.7
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 5.9e-52 207.6 113 92.9
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 2.6e-47 192.2 139 74.8
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 8.3e-46 187.2 111 88.3
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 3.0e-40 168.7 118 78.8
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.1e-37 160.2 111 72.1
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 1.4e-37 159.8 110 72.7
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 2.4e-37 159.1 110 71.8
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 7.0e-37 157.5 113 70.8
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 7.0e-37 157.5 111 70.3
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 7.0e-37 157.5 107 72.9
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 7.0e-37 157.5 107 72.9
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 9.2e-37 157.1 111 70.3
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.7e-35 152.9 109 72.5
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 2.3e-35 152.5 109 69.7
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 3.9e-35 151.8 110 69.1
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 3.9e-35 151.8 110 69.1
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 5.0e-35 151.4 110 67.3
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 6.6e-35 151.0 109 68.8
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 8.6e-35 150.6 114 67.5
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 3.3e-34 148.7 109 70.6
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 3.3e-34 148.7 110 67.3
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 4.3e-34 148.3 113 65.5
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 1.2e-33 146.7 109 66.1
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 1.2e-33 146.7 107 70.1
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 1.6e-33 146.4 109 67.0
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 2.1e-33 146.0 111 64.9
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 2.1e-33 146.0 110 65.5
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 2.1e-33 146.0 110 65.5
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 2.8e-33 145.6 110 67.3
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 2.8e-33 145.6 109 68.8
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 2.8e-33 145.6 109 68.8
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 2.8e-33 145.6 111 65.8
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 1.0e-32 143.7 110 66.4
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 1.4e-32 143.3 111 64.0
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 1.4e-32 143.3 111 64.0
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 1.4e-32 143.3 110 64.5
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 1.4e-32 143.3 110 64.5
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 1.4e-32 143.3 110 66.4
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 1.8e-32 142.9 110 64.5
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 2.3e-32 142.5 111 64.0
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 2.3e-32 142.5 111 64.0
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 2.3e-32 142.5 111 64.0
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 2.3e-32 142.5 111 64.0
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 2.3e-32 142.5 111 64.0
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 2.3e-32 142.5 111 64.0
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 2.3e-32 142.5 111 64.0
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 2.3e-32 142.5 106 67.9
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 2.3e-32 142.5 111 64.0
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 2.3e-32 142.5 110 61.8
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 2.3e-32 142.5 123 62.6
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 3.1e-32 142.1 110 64.5
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 4.0e-32 141.7 106 67.9
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 4.0e-32 141.7 113 61.9
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 4.0e-32 141.7 109 65.1
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 6.8e-32 141.0 111 64.0
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 6.8e-32 141.0 110 67.3
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 6.8e-32 141.0 109 65.1
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 6.8e-32 141.0 110 67.3
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 6.8e-32 141.0 110 62.7
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 6.8e-32 141.0 111 64.9
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 8.9e-32 140.6 108 63.0
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 8.9e-32 140.6 110 64.5
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 1.2e-31 140.2 111 63.1
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.2e-31 140.2 112 66.1
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 1.5e-31 139.8 111 65.8
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 2.0e-31 139.4 110 65.5
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.6e-31 139.0 108 65.7
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 4.4e-31 138.3 110 62.7
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 4.4e-31 138.3 110 62.7
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 4.4e-31 138.3 110 62.7
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 9.8e-31 137.1 110 62.7
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 2.2e-30 136.0 110 64.5
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.9e-30 135.6 102 67.6
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 2.9e-30 135.6 110 61.8
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 4.9e-30 134.8 108 61.1
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 6.4e-30 134.4 110 64.5
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 8.3e-30 134.0 110 60.9
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 1.1e-29 133.7 108 63.9
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 1.4e-29 133.3 110 63.6
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 1.9e-29 132.9 110 62.7
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 1.9e-29 132.9 107 64.5
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 2.4e-29 132.5 111 59.5
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 2.4e-29 132.5 110 61.8
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 3.2e-29 132.1 110 60.9
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 5.4e-29 131.3 109 61.5
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 5.4e-29 131.3 109 61.5
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 5.4e-29 131.3 110 60.0
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 7.0e-29 131.0 108 62.0
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 7.0e-29 131.0 145 50.3
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 7.0e-29 131.0 107 64.5
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 7.8e-28 127.5 110 60.9
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.0e-27 127.1 114 56.1
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 2.3e-27 125.9 114 56.1
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 3.0e-27 125.6 111 55.9
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 3.9e-27 125.2 111 58.6
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 5.0e-27 124.8 113 57.5
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 6.6e-27 124.4 113 57.5
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 6.6e-27 124.4 113 57.5
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 6.6e-27 124.4 113 57.5
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 1.1e-26 123.6 109 58.7
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 1.9e-26 122.9 110 58.2
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 4.3e-26 121.7 109 56.0
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 7.3e-26 120.9 109 55.0
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 1.2e-25 120.2 110 56.4
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 1.6e-25 119.8 113 57.5
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 1.6e-25 119.8 110 56.4
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 4.7e-25 118.2 107 56.1
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 1.4e-24 116.7 107 53.3
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 2.0e-23 112.8 112 54.5
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 2.6e-23 112.5 172 40.1
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 4.4e-23 111.7 62 85.5
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.7e-22 109.8 80 67.5
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 5.1e-19 98.2 70 67.1
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 8.6e-19 97.4 109 47.7
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.1e-17 92.8 77 59.7
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 8.1e-17 90.9 63 68.3
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 2.0e-15 86.3 56 73.2
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.0e-15 86.3 60 70.0
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 2.6e-15 85.9 63 66.7
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 8.4e-14 80.9 52 75.0
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 3.2e-13 79.0 96 43.8
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 4.6e-12 75.1 56 66.1
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 1.0e-11 73.9 89 48.3
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 5.6e-10 68.2 60 63.3
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 9.6e-10 67.4 48 66.7
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 9.6e-10 67.4 48 66.7
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 1.2e-09 67.0 53 60.4


User provided reference genes

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