Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 4.4e-206 721.1 372 100.0
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.2e-41 174.9 496 30.8
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.1e-34 151.8 285 37.5
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 9.1e-34 148.7 189 45.5
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 8.8e-29 132.1 373 28.7
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 8.8e-29 132.1 110 57.3
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 2.6e-25 120.6 164 41.5
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 3.8e-24 116.7 331 30.2
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 6.5e-24 115.9 222 35.6
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.1e-23 115.2 228 38.2
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 3.2e-23 113.6 198 35.9
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 9.4e-23 112.1 371 29.4
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 1.6e-22 111.3 162 41.4
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 2.7e-22 110.5 103 47.6
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.6e-22 110.2 114 46.5
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 4.7e-22 109.8 179 39.1
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.8e-21 107.8 118 44.9
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 3.0e-21 107.1 149 40.3
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 3.9e-21 106.7 246 33.3
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 3.9e-21 106.7 148 39.9
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 5.2e-21 106.3 160 36.9
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 6.7e-21 105.9 160 38.1
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.1e-20 105.1 435 26.2
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 1.1e-20 105.1 112 45.5
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 1.1e-20 105.1 257 32.3
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 2.0e-20 104.4 133 42.1
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 4.4e-20 103.2 112 44.6
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.7e-19 101.3 132 43.9
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 1.7e-19 101.3 294 28.9
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 3.7e-19 100.1 109 45.0
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 8.2e-19 99.0 149 36.2
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 8.2e-19 99.0 113 41.6
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 1.4e-18 98.2 111 45.0
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 1.8e-18 97.8 131 42.0
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.8e-18 97.8 113 43.4
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 2.4e-18 97.4 195 34.9
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 2.4e-18 97.4 193 35.2
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 2.4e-18 97.4 103 46.6
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 4.1e-18 96.7 350 30.9
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 9.1e-18 95.5 113 43.4
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 9.1e-18 95.5 307 29.6
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 1.2e-17 95.1 94 50.0
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.6e-17 94.7 127 41.7
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 2.6e-17 94.0 100 51.0
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 3.5e-17 93.6 112 42.9
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 4.5e-17 93.2 196 35.2
unitig_899.g14422 Utricularia gibba HOM05D006236 ORTHO05D003486 4.5e-17 93.2 190 34.2
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 5.9e-17 92.8 256 29.7
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 5.9e-17 92.8 256 29.7
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 7.7e-17 92.4 79 53.2
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 1.0e-16 92.0 241 29.0
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.0e-16 92.0 112 42.9
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 1.3e-16 91.7 112 42.0
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.7e-16 91.3 107 42.1
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 1.7e-16 91.3 257 32.3
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 2.2e-16 90.9 106 42.5
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.9e-16 90.5 114 43.0
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 2.9e-16 90.5 112 42.0
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 3.8e-16 90.1 177 32.8
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 3.8e-16 90.1 153 39.2
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 6.5e-16 89.4 239 28.5
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 8.5e-16 89.0 116 44.0
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 8.5e-16 89.0 111 45.9
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 8.5e-16 89.0 105 46.7
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 8.5e-16 89.0 220 31.8
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 8.5e-16 89.0 359 25.9
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.5e-15 88.2 284 28.2
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.5e-15 88.2 113 39.8
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 1.9e-15 87.8 152 35.5
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 3.2e-15 87.0 101 47.5
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 3.2e-15 87.0 106 40.6
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 4.2e-15 86.7 272 27.6
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 5.5e-15 86.3 174 29.3
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 7.2e-15 85.9 112 38.4
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 9.4e-15 85.5 110 40.0
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 9.4e-15 85.5 237 30.0
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 9.4e-15 85.5 99 43.4
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 9.4e-15 85.5 109 39.4
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 9.4e-15 85.5 114 41.2
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 9.4e-15 85.5 200 28.0
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.2e-14 85.1 120 39.2
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.2e-14 85.1 231 29.4
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 2.1e-14 84.3 111 39.6
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 2.1e-14 84.3 102 42.2
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.1e-14 84.3 108 38.0
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.7e-14 84.0 193 31.6
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 4.7e-14 83.2 102 40.2
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 4.7e-14 83.2 258 30.6
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 6.1e-14 82.8 242 32.6
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 6.1e-14 82.8 102 40.2
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 6.1e-14 82.8 118 41.5
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 6.1e-14 82.8 113 38.9
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 8.0e-14 82.4 103 45.6
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 8.0e-14 82.4 106 40.6
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.0e-13 82.0 104 43.3
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 1.0e-13 82.0 112 36.6
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 1.0e-13 82.0 112 36.6
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 1.0e-13 82.0 152 38.2
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 1.0e-13 82.0 209 29.7
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 1.4e-13 81.6 342 27.8
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.4e-13 81.6 118 38.1
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.4e-13 81.6 284 27.1
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.8e-13 81.3 123 40.7
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 2.3e-13 80.9 112 36.6
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 2.3e-13 80.9 102 46.1
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.3e-13 80.9 262 29.8
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.3e-13 80.9 146 37.0
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 4.0e-13 80.1 94 47.9
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 4.0e-13 80.1 205 30.2
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 6.7e-13 79.3 295 27.5
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 8.8e-13 79.0 118 38.1
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 8.8e-13 79.0 112 35.7
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 8.8e-13 79.0 112 35.7
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 8.8e-13 79.0 118 38.1
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 8.8e-13 79.0 110 37.3
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.5e-12 78.2 100 43.0
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 1.5e-12 78.2 100 43.0
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 1.5e-12 78.2 239 27.6
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.5e-12 78.2 89 41.6
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.5e-12 78.2 263 28.9
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 2.0e-12 77.8 100 42.0
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 2.6e-12 77.4 175 31.4
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 3.3e-12 77.0 104 42.3
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 3.3e-12 77.0 240 28.8
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 4.4e-12 76.6 342 28.9
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 5.7e-12 76.3 270 27.4
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 5.7e-12 76.3 100 41.0
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 5.7e-12 76.3 101 43.6
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 5.7e-12 76.3 98 40.8
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 5.7e-12 76.3 98 40.8
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 5.7e-12 76.3 295 26.1
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 7.5e-12 75.9 234 25.6
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 7.5e-12 75.9 232 31.9
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 7.5e-12 75.9 99 42.4
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 2.2e-11 74.3 113 35.4
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 2.8e-11 73.9 128 37.5
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 2.8e-11 73.9 158 29.1
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 3.7e-11 73.6 303 26.1
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 3.7e-11 73.6 113 39.8
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 4.8e-11 73.2 110 34.5
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.2e-11 72.4 310 28.1
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 8.2e-11 72.4 128 31.2
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 8.2e-11 72.4 98 40.8
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 1.1e-10 72.0 104 37.5
ECA246G0424 Erigeron canadensis HOM05D006236 ORTHO05D003486 1.1e-10 72.0 372 26.6
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.1e-10 72.0 102 37.3
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.4e-10 71.6 236 28.0
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.4e-10 71.6 101 42.6
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.8e-10 71.2 148 29.7
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 2.4e-10 70.9 84 48.8
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 3.1e-10 70.5 104 36.5
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 3.1e-10 70.5 101 38.6
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 4.1e-10 70.1 238 29.8
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 5.3e-10 69.7 104 38.5
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 9.1e-10 68.9 100 40.0
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 9.1e-10 68.9 107 38.3
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 9.1e-10 68.9 125 33.6
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.0e-09 67.8 100 33.0
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.7e-09 67.4 310 27.7
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 2.7e-09 67.4 92 39.1
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.5e-09 67.0 127 29.1
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 4.5e-09 66.6 111 37.8
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 5.9e-09 66.2 117 35.9
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 7.7e-09 65.9 110 40.0
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 7.7e-09 65.9 110 37.3
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.0e-08 65.5 168 31.0
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.0e-08 65.5 168 31.0
Peaxi162Scf00066g00424 Petunia axillaris HOM05D020480 ORTHO05D003486 1.0e-08 65.5 54 50.0
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 1.0e-08 65.5 287 27.2
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.3e-08 65.1 102 35.3
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.7e-08 64.7 293 23.9
Nitab4.5_0000317g0090 Nicotiana tabacum HOM05D020480 ORTHO05D003486 2.2e-08 64.3 225 24.9
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 3.8e-08 63.5 188 29.3
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 5.0e-08 63.2 278 26.6
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 5.0e-08 63.2 109 37.6
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 6.5e-08 62.8 278 26.6
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 6.5e-08 62.8 110 33.6
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 1.1e-07 62.0 102 34.3
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.5e-07 61.6 242 26.4
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 1.9e-07 61.2 278 26.3
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 1.9e-07 61.2 104 38.5
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 2.5e-07 60.8 278 26.3
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 4.2e-07 60.1 52 44.2
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 4.2e-07 60.1 104 37.5
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 9.4e-07 58.9 90 42.2
PSO528G0025 Papaver somniferum HOM05D020877 ORTHO05D003486 2.1e-06 57.8 104 36.5


User provided reference genes

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