Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 6.8e-299 1030.0 567 100.0
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 1.0e-278 963.0 584 91.6
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 2.0e-226 789.3 477 85.1
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 2.6e-226 788.9 543 82.0
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 1.2e-223 780.0 434 88.5
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.1e-215 752.7 492 79.9
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 2.1e-215 752.7 492 79.9
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 2.7e-215 752.3 462 82.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 4.7e-215 751.5 525 78.5
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 1.0e-214 750.4 534 78.3
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 3.0e-214 748.8 492 79.1
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 6.7e-214 747.7 457 82.9
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 8.8e-214 747.3 485 79.8
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 3.3e-213 745.3 484 80.2
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 7.4e-213 744.2 447 85.0
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 9.7e-213 743.8 461 81.8
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.2e-212 742.7 485 80.2
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 4.8e-212 741.5 528 78.0
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 1.4e-211 740.0 528 79.4
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 2.4e-211 739.2 460 82.0
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 2.4e-211 739.2 515 75.3
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 5.3e-211 738.0 482 80.9
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 9.1e-211 737.3 486 78.0
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 1.2e-210 736.9 499 77.6
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.2e-210 736.9 554 74.7
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 2.6e-210 735.7 534 76.8
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 3.5e-210 735.3 462 81.8
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 5.9e-210 734.6 473 79.5
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 7.7e-210 734.2 498 76.3
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 7.7e-210 734.2 461 80.9
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 5.0e-209 731.5 431 84.7
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 3.2e-208 728.8 478 78.9
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 3.2e-208 728.8 484 77.5
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 2.1e-207 726.1 483 78.1
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 3.6e-207 725.3 462 79.9
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 4.7e-207 724.9 501 76.4
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 8.0e-207 724.2 502 75.9
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 6.7e-206 721.1 490 78.4
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 2.6e-205 719.2 479 77.0
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 3.3e-205 718.8 477 79.7
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 4.4e-205 718.4 522 75.5
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 7.4e-205 717.6 452 80.8
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 7.4e-205 717.6 489 78.7
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.7e-204 716.5 513 73.5
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 1.7e-204 716.5 458 77.9
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 3.7e-204 715.3 565 69.6
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 3.7e-204 715.3 551 72.2
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 1.2e-202 710.3 525 73.5
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 2.0e-202 709.5 460 79.6
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 3.5e-202 708.8 436 82.1
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 4.5e-202 708.4 458 77.7
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 3.8e-201 705.3 453 80.4
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 8.5e-201 704.1 489 76.3
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 1.1e-200 703.7 510 74.3
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 3.2e-200 702.2 448 80.6
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 5.5e-200 701.4 428 83.6
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 9.4e-200 700.7 513 77.2
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 9.4e-200 700.7 529 72.6
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 2.7e-199 699.1 418 83.3
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 6.1e-199 698.0 516 74.4
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 8.0e-199 697.6 440 79.1
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 1.4e-198 696.8 463 76.2
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 2.3e-198 696.0 538 69.5
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.0e-198 695.7 460 77.6
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 3.0e-198 695.7 463 76.2
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 8.8e-198 694.1 460 77.4
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 2.6e-197 692.6 454 77.3
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 6.3e-196 688.0 509 71.9
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 1.1e-195 687.2 467 77.5
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.4e-195 686.8 502 71.7
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 2.4e-195 686.0 516 70.3
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 3.1e-195 685.6 445 78.4
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 7.7e-194 681.0 512 73.2
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 2.2e-193 679.5 546 71.4
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 2.9e-193 679.1 456 76.5
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 6.5e-193 677.9 524 68.3
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 3.2e-192 675.6 424 79.5
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 4.2e-192 675.2 437 78.9
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 5.5e-192 674.9 437 77.8
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 8.0e-191 671.0 433 78.3
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 1.4e-190 670.2 437 78.7
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 1.4e-190 670.2 437 78.7
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.8e-190 669.8 433 78.3
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 2.3e-190 669.5 453 75.5
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 3.0e-190 669.1 437 78.7
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 4.0e-190 668.7 424 79.5
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 2.6e-189 666.0 498 71.3
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 5.7e-189 664.8 439 77.0
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 3.7e-188 662.1 544 65.4
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 3.7e-188 662.1 439 75.6
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 1.1e-187 660.6 432 78.5
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 1.4e-187 660.2 465 74.0
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 1.2e-186 657.1 428 77.8
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 3.8e-185 652.1 432 76.9
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 1.6e-183 646.7 460 73.7
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.9e-177 625.5 490 69.8
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 6.1e-175 618.2 433 73.9
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 8.0e-175 617.8 460 71.1
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 1.0e-174 617.5 544 65.4
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.0e-173 613.2 433 73.9
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 4.4e-173 612.1 352 86.4
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 2.7e-170 602.8 418 71.1
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 3.5e-170 602.4 494 64.4
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 1.3e-169 600.5 518 66.8
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.1e-168 597.4 397 77.1
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 2.1e-167 593.2 493 64.9
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 2.8e-167 592.8 493 64.9
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 1.1e-166 590.9 551 60.8
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 2.3e-166 589.7 506 65.4
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 3.4e-165 585.9 509 61.1
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 1.7e-164 583.6 551 63.0
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 1.4e-163 580.5 351 82.3
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 1.3e-161 573.9 435 68.5
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 2.3e-161 573.2 364 77.7
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 5.6e-160 568.5 392 75.5
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.1e-158 564.3 447 69.4
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 1.9e-152 543.5 484 60.1
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 2.6e-149 533.1 501 59.9
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.4e-149 532.7 501 59.1
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 4.6e-146 522.3 438 61.9
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 2.2e-140 503.4 417 65.5
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 3.9e-137 492.7 397 66.8
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.5e-136 490.7 516 54.7
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 3.5e-130 469.5 486 56.8
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 6.0e-130 468.8 412 59.2
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 1.0e-129 468.0 500 52.4
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 2.3e-129 466.8 373 66.8
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 4.3e-128 462.6 438 55.5
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 3.7e-127 459.5 422 59.7
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 8.1e-127 458.4 435 54.7
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 2.0e-125 453.8 449 54.3
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 7.6e-125 451.8 367 65.7
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 1.1e-120 438.0 468 54.9
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 2.4e-118 430.3 486 52.7
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 2.6e-117 426.8 412 58.7
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 4.6e-114 416.0 427 52.5
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 2.2e-111 407.1 689 39.8
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 3.6e-106 389.8 346 58.7
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.4e-102 377.9 296 68.2
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 6.5e-100 369.0 452 48.7
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 8.5e-100 368.6 284 67.6
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 7.2e-99 365.5 473 47.8
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 1.6e-98 364.4 273 71.8
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 2.4e-94 350.5 321 58.9
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 1.2e-90 338.2 485 43.9
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 4.4e-88 329.7 353 52.7
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 1.0e-81 308.5 278 61.5
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 1.4e-81 308.1 409 41.6
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 2.4e-78 297.4 261 70.9
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.5e-75 288.1 342 46.8
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 1.8e-73 281.2 166 83.1
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 2.0e-69 267.7 354 47.5
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 2.9e-47 194.1 305 43.6
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 2.6e-40 171.0 98 79.6
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 1.7e-31 141.7 100 68.0
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 3.0e-28 131.0 212 41.0
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 8.7e-28 129.4 148 54.1
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 9.6e-27 125.9 106 63.2
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 1.6e-26 125.2 93 74.2
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 1.1e-22 112.5 130 53.1
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.0e-20 105.9 70 74.3
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 1.7e-20 105.1 151 43.0
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 8.7e-20 102.8 123 48.8
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 2.5e-19 101.3 130 50.0
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 9.6e-19 99.4 206 38.8
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 1.8e-17 95.1 157 40.8
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 1.8e-17 95.1 83 57.8
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 4.0e-17 94.0 252 30.2
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 4.0e-17 94.0 45 91.1
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 3.4e-16 90.9 75 54.7
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 1.6e-13 82.0 46 84.8
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 3.9e-12 77.4 143 37.1
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 1.1e-11 75.9 128 41.4
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 6.2e-10 70.1 96 44.8
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.4e-09 68.9 77 51.9
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 1.8e-09 68.6 51 62.7
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 2.0e-08 65.1 199 25.6
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 7.6e-08 63.2 39 82.1
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.3e-07 62.4 214 26.2
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.4e-06 58.9 202 23.3


User provided reference genes

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