Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 3.9e-279 964.1 481 100.0
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 5.4e-180 634.8 481 65.9
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 1.5e-177 626.7 485 66.0
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 6.8e-175 617.8 481 65.7
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 6.8e-175 617.8 481 65.7
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 1.9e-164 583.2 484 61.4
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 3.1e-151 539.3 478 57.5
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 6.0e-147 525.0 482 56.2
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 2.1e-139 500.0 481 52.8
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 1.1e-137 494.2 484 54.1
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 1.1e-132 477.6 481 51.1
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 3.2e-132 476.1 481 52.0
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 3.2e-132 476.1 481 52.0
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 6.2e-128 461.8 480 50.2
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 1.0e-125 454.5 450 53.3
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 1.3e-125 454.1 484 49.0
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 4.2e-124 449.1 473 49.7
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 1.3e-122 444.1 481 49.7
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 3.3e-121 439.5 481 48.2
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 3.3e-121 439.5 486 48.8
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 5.7e-121 438.7 481 47.2
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 2.2e-120 436.8 483 47.6
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 2.8e-120 436.4 482 46.3
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 6.9e-119 431.8 483 48.0
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 7.2e-116 421.8 477 47.0
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 1.6e-115 420.6 488 46.1
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 3.9e-114 416.0 479 48.4
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 3.7e-112 409.5 477 47.0
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 8.2e-112 408.3 482 44.8
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 1.4e-111 407.5 482 45.0
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 5.3e-111 405.6 488 44.3
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 1.7e-109 400.6 483 45.1
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 2.5e-108 396.7 483 44.7
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 1.8e-106 390.6 463 45.4
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 1.1e-105 387.9 483 44.1
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 2.0e-105 387.1 489 44.2
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 2.6e-105 386.7 481 43.9
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 2.6e-105 386.7 477 43.6
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 2.6e-105 386.7 482 43.6
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 7.4e-105 385.2 478 43.9
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 4.8e-104 382.5 481 44.3
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 6.3e-104 382.1 482 42.9
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 4.1e-103 379.4 490 43.3
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 9.1e-103 378.3 471 46.3
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 2.6e-102 376.7 481 43.7
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 7.7e-102 375.2 481 44.1
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 3.8e-101 372.9 481 43.5
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 3.8e-101 372.9 482 43.8
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 3.8e-101 372.9 483 43.7
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 5.0e-101 372.5 477 43.0
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 6.5e-101 372.1 444 45.3
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 6.5e-101 372.1 485 42.5
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 3.2e-100 369.8 483 43.5
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 9.4e-100 368.2 486 41.8
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 1.2e-99 367.9 485 43.5
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 8.0e-99 365.2 483 42.7
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 2.3e-98 363.6 484 43.2
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 6.7e-98 362.1 346 52.9
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 2.6e-97 360.1 482 43.8
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 5.3e-95 352.4 481 42.4
COL.COLO4_18239 Corchorus olitorius HOM05D006588 ORTHO05D008272 1.6e-94 350.9 481 42.2
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 8.8e-90 335.1 348 49.4
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 3.1e-87 326.6 484 39.7
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 7.0e-87 325.5 481 40.1
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 4.2e-84 316.2 487 38.4
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 5.5e-84 315.8 432 41.7
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 3.6e-83 313.2 468 38.5
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 4.0e-82 309.7 484 36.8
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 4.0e-82 309.7 484 36.8
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 1.4e-74 284.6 534 35.4
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 3.7e-72 276.6 483 35.0
Rhsim05G0031600 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.1e-71 275.0 295 50.2
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 7.0e-71 272.3 484 36.2
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 2.7e-70 270.4 485 33.2
Haze_25873 Corylus avellana HOM05D006588 ORTHO05D008272 1.2e-67 261.5 287 48.4
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 8.9e-66 255.4 475 37.3
CANSAT56G3251 Cannabis sativa HOM05D006588 ORTHO05D008272 5.8e-65 252.7 277 46.9
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 1.1e-63 248.4 481 35.6
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 4.1e-63 246.5 484 35.7
Eucgr.L03123 Eucalyptus grandis HOM05D006588 ORTHO05D008272 5.4e-63 246.1 542 34.1
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 1.2e-62 245.0 485 35.9
MELO3C011777.2 Cucumis melo HOM05D006588 ORTHO05D008272 1.3e-61 241.5 295 44.4
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 1.7e-61 241.1 481 35.6
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 4.3e-60 236.5 225 53.3
BcaC09g51727 Brassica carinata HOM05D006588 ORTHO05D008272 3.6e-59 233.4 296 43.9
SEGI_25649 Sequoiadendron giganteum HOM05D006588 ORTHO05D008272 8.9e-58 228.8 487 30.8
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 2.5e-52 210.7 434 36.4
Zm00001eb121140 Zea mays HOM05D006588 ORTHO05D008272 1.8e-50 204.5 485 30.7
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 1.2e-49 201.8 233 45.1
Nn7g36587 Nelumbo nucifera HOM05D006588 ORTHO05D008272 2.0e-49 201.1 269 42.0
Os01g0193500 Oryza sativa ssp. japonica HOM05D006588 ORTHO05D008272 1.4e-47 194.9 487 30.0
Lsat_1_v5_gn_7_38181 Lactuca sativa HOM05D006588 ORTHO05D008272 6.4e-40 169.5 470 30.6
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 3.2e-39 167.2 345 35.7
HanXRQChr03g0060621 Helianthus annuus HOM05D006588 ORTHO05D008272 1.4e-34 151.8 282 36.9
Lsat_1_v5_gn_7_39080 Lactuca sativa HOM05D006588 ORTHO05D008272 4.6e-30 136.7 211 37.4
Rhsim05G0031700 Rhododendron simsii HOM05D006588 ORTHO05D008272 4.6e-30 136.7 300 33.0
SalBow8G2706 Salvia bowleyana HOM05D000076 ORTHO05D013329 2.1e-27 127.9 87 71.3
AagrBONN_evm.TU.Sc2ySwM_228.3249 Anthoceros agrestis HOM05D006588 ORTHO05D008272 7.1e-23 112.8 313 26.8
unitig_699.g19308 Utricularia gibba HOM05D006588 ORTHO05D008272 2.5e-20 104.4 162 38.3
unitig_699.g19307 Utricularia gibba HOM05D006588 ORTHO05D008272 3.3e-20 104.0 123 43.9
HanXRQChr03g0061001 Helianthus annuus HOM05D006588 ORTHO05D008272 1.3e-16 92.0 146 38.4
Pp3c1_20980 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.2e-16 91.3 546 20.3
Mapoly0117s0028 Marchantia polymorpha HOM05D006588 ORTHO05D008272 4.9e-16 90.1 462 21.9
Mapoly0117s0029 Marchantia polymorpha HOM05D006588 ORTHO05D008272 8.4e-16 89.4 470 22.6
Mapoly0029s0113 Marchantia polymorpha HOM05D006588 ORTHO05D008272 1.4e-15 88.6 464 21.1
Pp3c21_900 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.4e-15 88.6 307 24.4
Lsat_1_v5_gn_7_38261 Lactuca sativa HOM05D006588 ORTHO05D008272 5.1e-13 80.1 122 36.9
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.7e-13 79.7 62 58.1
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 8.7e-13 79.3 62 58.1
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 8.7e-13 79.3 62 58.1
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.5e-12 78.6 62 54.8
Pp3c10_4240 Physcomitrium patens HOM05D006588 ORTHO05D008272 4.3e-12 77.0 390 22.1
Pp3c2_16400 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.3e-11 75.5 544 19.3
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.6e-11 75.1 57 57.9
Pp3c4_15950 Physcomitrium patens HOM05D006588 ORTHO05D008272 5.3e-10 70.1 254 24.0
Pp3c13_20140 Physcomitrium patens HOM05D006588 ORTHO05D008272 9.0e-10 69.3 390 20.5
Pp3c19_6110 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.2e-09 68.9 395 22.0
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.6e-09 67.8 56 51.8
Pp3c18_21550 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.2e-07 60.8 323 22.3
HanXRQChr03g0060641 Helianthus annuus HOM05D006588 ORTHO05D008272 7.9e-06 56.2 67 35.8


User provided reference genes

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