Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 4.0e-114 414.8 217 100.0
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 7.8e-86 320.9 215 76.3
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 2.0e-81 306.2 215 73.5
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 6.4e-80 301.2 217 71.4
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 3.4e-73 278.9 217 65.9
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 2.9e-72 275.8 202 68.8
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 8.3e-72 274.2 214 66.4
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 3.2e-71 272.3 205 67.8
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 7.1e-71 271.2 203 68.5
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 9.2e-71 270.8 206 67.5
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 1.2e-70 270.4 208 69.2
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 1.6e-70 270.0 214 65.4
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 2.1e-70 269.6 220 64.5
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 2.7e-70 269.2 219 64.4
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 3.5e-70 268.9 207 67.1
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.0e-69 267.3 208 67.8
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.0e-69 267.3 203 67.5
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 1.3e-69 266.9 214 64.0
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.3e-69 266.9 206 68.0
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 1.7e-69 266.5 206 68.9
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 2.3e-69 266.2 203 67.0
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 2.3e-69 266.2 207 65.7
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 3.0e-69 265.8 203 67.0
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 5.1e-69 265.0 208 67.8
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 6.6e-69 264.6 215 64.2
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.9e-68 263.1 207 67.6
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 2.5e-68 262.7 189 69.8
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 3.3e-68 262.3 203 67.0
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 4.3e-68 261.9 216 64.4
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 1.6e-67 260.0 218 62.8
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 2.1e-67 259.6 217 62.7
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 4.7e-67 258.5 206 65.5
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 1.1e-66 257.3 214 62.1
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 1.1e-66 257.3 191 67.0
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 1.8e-66 256.5 206 64.1
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 3.1e-66 255.8 207 64.7
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 3.1e-66 255.8 213 63.8
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 5.2e-66 255.0 210 64.3
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 6.8e-66 254.6 205 65.4
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 1.2e-65 253.8 230 60.4
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 3.4e-65 252.3 189 66.1
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 3.4e-65 252.3 226 61.1
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 4.4e-65 251.9 234 60.3
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 7.6e-65 251.1 220 61.8
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 7.6e-65 251.1 205 65.4
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 3.8e-64 248.8 221 62.0
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 4.9e-64 248.4 217 57.6
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 4.9e-64 248.4 221 62.9
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 1.1e-63 247.3 219 60.3
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 1.1e-63 247.3 207 60.9
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 1.4e-63 246.9 198 63.1
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 2.4e-63 246.1 206 62.1
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 3.2e-63 245.7 182 68.7
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 3.2e-63 245.7 210 61.0
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 4.1e-63 245.4 198 63.1
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 4.1e-63 245.4 211 61.1
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 1.6e-62 243.4 207 61.4
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 1.6e-62 243.4 182 67.0
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 1.6e-62 243.4 222 56.8
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 1.6e-62 243.4 219 60.3
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 2.7e-62 242.7 182 67.0
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 2.7e-62 242.7 217 59.0
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 4.6e-62 241.9 220 59.5
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 1.0e-61 240.7 213 55.9
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 3.9e-61 238.8 221 59.7
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 3.9e-61 238.8 198 62.6
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 1.1e-60 237.3 209 61.2
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 3.3e-60 235.7 208 61.5
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 2.1e-59 233.0 222 59.9
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 2.1e-59 233.0 205 62.0
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 3.6e-59 232.3 232 55.6
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 8.1e-59 231.1 217 58.1
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 1.4e-58 230.3 208 59.1
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 4.0e-58 228.8 167 67.7
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 1.5e-57 226.9 156 71.2
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 2.0e-57 226.5 172 65.7
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 8.4e-56 221.1 172 64.5
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 1.1e-55 220.7 156 69.2
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 1.1e-55 220.7 167 65.9
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 1.4e-55 220.3 155 68.4
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 2.4e-55 219.5 156 69.2
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 1.3e-53 213.8 182 61.0
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 1.1e-52 210.7 214 54.7
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 1.1e-52 210.7 228 51.8
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 3.3e-52 209.1 212 54.2
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 2.4e-47 193.0 155 64.5
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 1.6e-46 190.3 127 72.4
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 2.3e-45 186.4 142 65.5
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 2.4e-42 176.4 154 62.3
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 2.1e-38 163.3 217 46.1
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 4.6e-38 162.2 138 62.3
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 1.3e-37 160.6 138 62.3
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.9e-36 156.8 125 62.4
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 1.2e-22 110.9 149 49.7
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.0e-21 107.8 76 71.1
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.0e-21 107.8 76 71.1
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 1.2e-17 94.4 186 36.0
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 7.7e-17 91.7 59 72.9
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 1.7e-16 90.5 69 59.4
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 1.1e-15 87.8 73 53.4
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 1.4e-15 87.4 198 35.4
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 1.6e-14 84.0 157 38.9
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.8e-10 70.5 75 53.3


User provided reference genes

Program Settings