Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 3.4e-186 654.8 329 100.0
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 9.0e-94 347.8 302 63.6
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 4.3e-80 302.4 348 50.6
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 3.6e-74 282.7 353 49.3
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 5.7e-72 275.4 365 47.9
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 6.5e-68 261.9 362 46.1
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.3e-60 237.7 364 42.3
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 5.0e-60 235.7 368 42.7
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.4e-59 234.2 366 44.5
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 2.1e-58 230.3 363 43.0
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 2.1e-58 230.3 366 44.3
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 3.6e-58 229.6 366 44.0
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 6.7e-57 225.3 358 43.0
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 2.6e-56 223.4 352 42.0
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 4.4e-56 222.6 357 42.3
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 7.4e-56 221.9 358 43.0
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 4.8e-55 219.2 370 40.8
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 3.1e-54 216.5 329 42.9
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 3.1e-54 216.5 395 40.3
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 5.3e-54 215.7 362 41.2
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 2.0e-53 213.8 350 40.0
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 3.5e-53 213.0 345 44.6
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 3.5e-53 213.0 361 42.9
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 4.5e-53 212.6 358 41.6
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 5.9e-53 212.2 358 41.6
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.7e-52 210.7 362 40.6
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 2.2e-52 210.3 362 41.4
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 2.2e-52 210.3 363 41.0
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 2.9e-52 209.9 359 38.4
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 3.8e-52 209.5 367 42.2
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 5.0e-52 209.1 341 40.5
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 8.5e-52 208.4 358 41.3
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.5e-51 207.6 357 41.7
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.9e-51 207.2 361 41.8
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.9e-51 207.2 361 41.8
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 2.5e-51 206.8 361 39.3
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 1.6e-50 204.1 357 40.3
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.1e-50 203.8 360 39.4
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 2.1e-50 203.8 347 40.6
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 2.1e-50 203.8 371 41.0
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 2.7e-50 203.4 345 41.2
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.7e-50 203.4 362 40.1
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 6.1e-50 202.2 365 41.4
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.4e-49 201.1 364 41.2
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 1.4e-49 201.1 335 43.0
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.8e-49 200.7 365 41.1
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.8e-49 200.7 349 40.1
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 2.3e-49 200.3 342 39.8
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.0e-49 199.5 360 39.7
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 5.2e-49 199.1 370 39.5
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 6.7e-49 198.7 357 38.1
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 8.8e-49 198.4 356 39.0
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.0e-48 197.2 366 40.7
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 4.8e-47 192.6 363 40.5
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.1e-46 191.4 334 38.3
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.8e-46 190.7 324 42.3
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 4.1e-46 189.5 338 40.5
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 7.0e-46 188.7 354 40.1
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.0e-45 187.2 359 37.0
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 5.9e-45 185.7 364 39.3
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 7.7e-45 185.3 350 37.7
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.5e-43 180.3 357 37.0
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 4.2e-43 179.5 378 36.5
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 9.4e-43 178.3 331 38.4
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 9.4e-43 178.3 340 37.6
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 9.4e-43 178.3 354 38.4
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.6e-42 177.6 335 38.2
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 2.7e-42 176.8 351 37.6
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 2.7e-42 176.8 356 36.0
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.7e-42 176.8 334 36.8
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 6.1e-42 175.6 365 37.8
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 8.0e-42 175.3 338 38.8
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 8.0e-42 175.3 341 36.7
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 4.0e-41 172.9 342 37.1
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 4.0e-41 172.9 339 38.1
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 4.0e-41 172.9 430 33.5
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 5.2e-41 172.6 355 36.6
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 6.8e-41 172.2 352 35.8
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 8.8e-41 171.8 352 35.8
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 2.0e-40 170.6 345 38.3
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 2.6e-40 170.2 333 36.9
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 2.6e-40 170.2 352 35.8
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 3.4e-40 169.9 361 35.5
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 3.4e-40 169.9 196 52.0
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 9.8e-40 168.3 338 37.0
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.7e-39 167.5 364 35.4
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 2.8e-39 166.8 318 40.3
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.8e-39 166.0 334 36.2
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 1.1e-38 164.9 337 38.6
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 2.4e-38 163.7 420 34.0
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 3.1e-38 163.3 359 35.1
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 5.4e-38 162.5 418 34.2
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 7.7e-37 158.7 341 36.1
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 1.0e-36 158.3 342 37.1
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.3e-36 157.9 346 34.7
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 2.3e-36 157.1 359 34.5
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 2.3e-36 157.1 330 38.8
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.5e-35 153.7 383 34.2
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 2.5e-35 153.7 358 34.6
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 3.6e-34 149.8 329 37.4
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 8.0e-34 148.7 328 36.0
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 1.0e-33 148.3 263 42.2
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 8.9e-33 145.2 315 37.1
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 2.8e-31 140.2 324 35.8
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 4.9e-31 139.4 323 33.4
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 4.9e-31 139.4 374 32.1
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 2.4e-30 137.1 105 67.6
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 5.4e-30 136.0 255 37.3
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 7.0e-30 135.6 165 47.3
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.6e-29 134.4 195 44.1
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 5.9e-29 132.5 167 45.5
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 2.9e-28 130.2 314 36.9
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.8e-28 129.8 185 44.3
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 3.8e-28 129.8 307 35.5
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 1.5e-27 127.9 343 33.8
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 2.5e-27 127.1 185 44.9
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 4.3e-27 126.3 155 45.2
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 2.3e-25 120.6 155 44.5
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 3.1e-25 120.2 369 30.9
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 4.0e-25 119.8 357 30.5
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 4.0e-25 119.8 281 33.5
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 8.9e-25 118.6 378 29.6
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 8.3e-23 112.1 114 46.5
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 3.2e-22 110.2 267 33.7
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 2.7e-21 107.1 336 30.7
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 1.5e-19 101.3 99 51.5
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 4.9e-15 86.3 140 37.1
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.1e-14 85.1 152 36.2
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.2e-13 81.6 163 32.5
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 4.6e-13 79.7 155 32.9
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 1.0e-12 78.6 103 46.6
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.3e-12 78.2 171 34.5
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 6.6e-12 75.9 150 35.3
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.5e-11 74.7 155 31.6
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.5e-11 73.9 155 32.3
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 2.8e-10 70.5 222 31.1
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 3.6e-10 70.1 334 25.7


User provided reference genes

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