Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 2.0e-121 439.1 226 100.0
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 1.0e-56 224.2 274 51.8
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 8.5e-35 151.4 294 38.4
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 2.8e-30 136.3 261 39.1
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 1.6e-20 104.0 291 32.0
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 3.8e-19 99.4 284 29.6
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.9e-18 97.1 98 52.0
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 2.5e-18 96.7 142 40.1
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 2.5e-18 96.7 127 42.5
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 4.2e-18 95.9 119 43.7
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 2.3e-16 90.1 101 46.5
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 5.2e-16 89.0 106 45.3
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.5e-15 87.4 155 36.8
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 4.4e-15 85.9 140 34.3
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 5.7e-15 85.5 151 37.7
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 1.3e-14 84.3 133 41.4
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 2.8e-14 83.2 144 36.1
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 4.8e-14 82.4 171 34.5
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 6.3e-14 82.0 287 26.8
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 1.4e-13 80.9 223 29.1
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 2.4e-13 80.1 295 25.8
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 2.4e-13 80.1 264 29.2
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 3.1e-13 79.7 261 29.5
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 4.1e-13 79.3 151 36.4
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 5.4e-13 79.0 292 28.4
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 9.1e-13 78.2 103 42.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 1.6e-12 77.4 130 36.9
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 2.7e-12 76.6 148 35.8
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 5.9e-12 75.5 107 42.1
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 7.7e-12 75.1 99 45.5
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 7.7e-12 75.1 128 39.8
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 1.0e-11 74.7 121 35.5
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.3e-11 74.3 149 35.6
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 1.7e-11 73.9 172 33.7
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 2.9e-11 73.2 146 34.9
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 3.8e-11 72.8 120 36.7
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 5.0e-11 72.4 186 32.8
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 5.0e-11 72.4 262 27.1
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 6.5e-11 72.0 152 35.5
TWI81G0899 Tripterygium wilfordii HOM05D008057 ORTHO05D003476 6.5e-11 72.0 116 39.7
HanXRQChr08g0226101 Helianthus annuus HOM05D008057 ORTHO05D003476 1.9e-10 70.5 268 26.5
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 2.5e-10 70.1 141 33.3
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 3.2e-10 69.7 80 41.2
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 4.2e-10 69.3 152 31.6
AUR62033080 Chenopodium quinoa HOM05D008057 ORTHO05D003476 5.5e-10 68.9 98 41.8
AUR62042766 Chenopodium quinoa HOM05D008057 ORTHO05D003476 5.5e-10 68.9 94 42.6
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 5.5e-10 68.9 118 39.0
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 5.5e-10 68.9 80 48.8
Haze_18401 Corylus avellana HOM05D008057 ORTHO05D003476 9.4e-10 68.2 46 60.9
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 9.4e-10 68.2 98 42.9
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 1.2e-09 67.8 165 30.9
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.6e-09 67.4 119 37.8
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 1.6e-09 67.4 155 35.5
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.1e-09 67.0 76 46.1
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 2.1e-09 67.0 102 39.2
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 3.6e-09 66.2 144 33.3
Oeu050291.1 Olea europaea HOM05D008057 ORTHO05D003476 3.6e-09 66.2 111 40.5
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 4.7e-09 65.9 158 31.6
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 8.0e-09 65.1 74 43.2
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.0e-08 64.7 82 40.2
PSO063G6649 Papaver somniferum HOM05D045975 ORTHO05D003476 1.0e-08 64.7 160 30.6
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 1.0e-08 64.7 162 32.1
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 1.0e-08 64.7 107 41.1
Sc12g0007990 Simmondsia chinensis HOM05D008057 ORTHO05D003476 1.8e-08 63.9 52 55.8
HPP92_025600 Vanilla planifolia HOM05D061565 ORTHO05D003476 1.8e-08 63.9 145 36.6
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 2.3e-08 63.5 121 32.2
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 4.0e-08 62.8 74 41.9
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 4.0e-08 62.8 86 37.2
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 4.0e-08 62.8 115 34.8
Lsat_1_v5_gn_8_540 Lactuca sativa HOM05D008057 ORTHO05D003476 4.0e-08 62.8 276 25.7
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 5.2e-08 62.4 89 39.3
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 6.8e-08 62.0 121 32.2
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 8.8e-08 61.6 116 37.1
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 1.2e-07 61.2 177 29.4
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 1.5e-07 60.8 110 39.1
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.5e-07 60.8 141 28.4
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 2.0e-07 60.5 66 40.9
vmacro12841 Vaccinium macrocarpon HOM05D008057 ORTHO05D003476 3.4e-07 59.7 73 43.8
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 5.7e-07 58.9 192 26.6
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 5.7e-07 58.9 96 35.4
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 5.7e-07 58.9 89 38.2
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 5.7e-07 58.9 163 28.8
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 9.8e-07 58.2 62 40.3
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 9.8e-07 58.2 113 33.6
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 9.8e-07 58.2 62 40.3
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 9.8e-07 58.2 62 40.3
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 9.8e-07 58.2 106 36.8
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.3e-06 57.8 62 40.3
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.3e-06 57.8 62 40.3
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.3e-06 57.8 113 33.6
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.3e-06 57.8 85 35.3
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.3e-06 57.8 85 36.5
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 1.7e-06 57.4 93 34.4
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.7e-06 57.4 62 40.3
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.7e-06 57.4 62 40.3
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 2.2e-06 57.0 91 34.1
EL10Ac9g22929 Beta vulgaris HOM05D008057 ORTHO05D003476 2.2e-06 57.0 84 41.7
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 2.2e-06 57.0 62 38.7
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 2.2e-06 57.0 83 38.6
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 2.8e-06 56.6 164 29.3
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 2.8e-06 56.6 79 39.2
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 2.8e-06 56.6 79 39.2
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 2.8e-06 56.6 79 36.7
FvH4_5g27110 Fragaria vesca HOM05D015681 ORTHO05D003476 2.8e-06 56.6 80 36.2
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 2.8e-06 56.6 74 39.2
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 3.7e-06 56.2 79 35.4
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 3.7e-06 56.2 85 35.3
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 3.7e-06 56.2 85 34.1
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 4.9e-06 55.8 62 38.7
Ah.09g232210 Amaranthus hybridus HOM05D002613 ORTHO05D003140 4.9e-06 55.8 141 31.2
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 4.9e-06 55.8 87 35.6
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 4.9e-06 55.8 164 28.0
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 4.9e-06 55.8 155 29.7
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 4.9e-06 55.8 164 28.0
Ca_25286_v3 Cicer arietinum L. HOM05D008057 ORTHO05D003476 4.9e-06 55.8 106 33.0
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 4.9e-06 55.8 89 37.1
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 4.9e-06 55.8 79 35.4
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 4.9e-06 55.8 79 35.4
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 4.9e-06 55.8 79 35.4
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 4.9e-06 55.8 74 37.8
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 4.9e-06 55.8 74 37.8
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 6.3e-06 55.5 117 32.5
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 6.3e-06 55.5 133 30.8
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 6.3e-06 55.5 79 36.7
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 6.3e-06 55.5 79 36.7
FAN18G3766 Fragaria x ananassa HOM05D015681 ORTHO05D003476 6.3e-06 55.5 78 39.7
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 6.3e-06 55.5 85 32.9
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 6.3e-06 55.5 79 35.4
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 8.3e-06 55.1 90 35.6
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 8.3e-06 55.1 62 38.7
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 8.3e-06 55.1 62 38.7
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 8.3e-06 55.1 71 38.0
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 8.3e-06 55.1 65 40.0
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 8.3e-06 55.1 85 32.9


User provided reference genes

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