Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 1.7e-128 462.6 229 100.0
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 2.6e-124 448.7 229 96.1
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 5.4e-122 441.0 227 93.8
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 9.3e-122 440.3 227 93.4
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 9.3e-122 440.3 227 93.4
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.2e-121 439.9 226 94.2
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.2e-121 439.9 226 94.2
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.2e-121 439.9 229 93.0
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 3.5e-121 438.3 227 94.7
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 4.6e-121 438.0 226 93.8
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 6.0e-121 437.6 229 92.6
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 92.6
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 1.0e-120 436.8 229 92.1
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 1.3e-120 436.4 227 93.0
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.3e-120 436.4 229 92.1
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.7e-120 436.0 227 93.0
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 3.0e-120 435.3 229 92.6
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 3.0e-120 435.3 227 92.5
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 3.0e-120 435.3 227 92.5
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 3.0e-120 435.3 227 93.0
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 3.0e-120 435.3 229 91.7
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 3.0e-120 435.3 227 93.0
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 3.9e-120 434.9 227 93.0
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 3.9e-120 434.9 229 91.3
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 5.1e-120 434.5 229 92.6
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 5.1e-120 434.5 229 92.1
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 8.7e-120 433.7 227 92.1
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 8.7e-120 433.7 227 92.1
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 1.1e-119 433.3 227 92.1
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 1.1e-119 433.3 227 92.5
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 1.1e-119 433.3 227 92.1
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 1.5e-119 433.0 229 91.7
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 1.5e-119 433.0 227 91.6
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 1.5e-119 433.0 229 91.7
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 1.5e-119 433.0 227 92.1
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 3.3e-119 431.8 229 91.3
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 3.3e-119 431.8 229 91.3
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 3.3e-119 431.8 229 91.3
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 3.3e-119 431.8 227 92.5
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 4.3e-119 431.4 227 92.1
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 4.3e-119 431.4 227 91.6
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 5.6e-119 431.0 227 91.6
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 7.3e-119 430.6 227 92.1
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 7.3e-119 430.6 227 90.7
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 2.1e-118 429.1 227 91.2
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 2.1e-118 429.1 227 90.7
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.8e-118 428.7 229 90.0
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 3.6e-118 428.3 229 89.5
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.8e-118 427.9 227 90.3
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.8e-118 427.9 227 90.3
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 4.8e-118 427.9 227 90.3
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 4.8e-118 427.9 229 91.3
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 8.1e-118 427.2 227 91.2
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 1.1e-117 426.8 229 90.4
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 1.4e-117 426.4 227 91.2
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 1.4e-117 426.4 227 91.2
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.8e-117 426.0 227 89.0
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 5.3e-117 424.5 227 89.4
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 6.9e-117 424.1 229 89.5
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 6.9e-117 424.1 228 90.8
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.5e-116 422.9 227 90.7
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 2.0e-116 422.5 231 89.6
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 4.5e-116 421.4 231 89.2
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 9.9e-116 420.2 229 87.8
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 9.9e-116 420.2 229 88.2
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 1.3e-115 419.9 219 92.7
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.7e-115 419.5 229 89.1
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 1.1e-114 416.8 227 89.0
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.9e-114 416.0 227 88.1
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 5.4e-114 414.5 229 89.1
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 2.1e-113 412.5 227 86.8
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 7.9e-113 410.6 227 86.8
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 1.0e-112 410.2 227 86.8
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 1.0e-112 410.2 227 86.8
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 1.0e-112 410.2 227 86.8
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 1.0e-112 410.2 227 86.8
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 1.0e-112 410.2 227 86.8
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 2.3e-112 409.1 227 86.3
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 3.0e-112 408.7 227 89.0
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 5.1e-112 407.9 227 85.9
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 8.7e-112 407.1 227 86.8
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 1.9e-111 406.0 227 85.0
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 2.5e-111 405.6 227 85.9
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 2.5e-111 405.6 227 85.5
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 4.3e-111 404.8 226 85.8
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 5.6e-111 404.4 227 84.6
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 1.3e-110 403.3 226 85.4
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 2.1e-110 402.5 236 83.5
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 2.8e-110 402.1 227 84.1
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 3.7e-110 401.7 227 84.1
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 3.7e-110 401.7 227 85.5
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 4.8e-110 401.4 227 84.1
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 1.4e-109 399.8 227 83.7
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 5.3e-109 397.9 227 83.7
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 2.0e-108 396.0 228 82.5
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 2.6e-108 395.6 254 77.6
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 4.9e-107 391.3 227 82.4
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 5.5e-106 387.9 204 92.6
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 3.0e-104 382.1 201 92.0
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 5.1e-104 381.3 211 88.6
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 6.7e-104 380.9 202 91.6
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 2.5e-103 379.0 229 79.5
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 1.3e-102 376.7 227 78.9
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.8e-102 375.6 227 81.9
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 7.6e-100 367.5 229 74.7
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 7.6e-100 367.5 200 89.5
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 6.5e-99 364.4 250 75.6
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 5.5e-98 361.3 190 93.7
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 9.3e-98 360.5 189 93.1
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 9.3e-98 360.5 210 81.4
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.6e-97 359.8 226 73.9
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.6e-97 359.8 226 73.9
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 2.1e-97 359.4 190 92.1
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 1.0e-96 357.1 191 91.1
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 1.0e-96 357.1 231 78.4
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 1.3e-96 356.7 187 94.1
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 1.8e-96 356.3 229 78.6
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 8.7e-96 354.0 227 75.8
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 3.7e-94 348.6 219 79.9
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 3.1e-93 345.5 185 93.0
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 1.0e-91 340.5 226 70.8
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.1e-90 337.0 185 88.1
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 6.7e-88 327.8 226 72.1
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 1.7e-83 313.2 162 92.6
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 3.8e-83 312.0 174 89.7
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.8e-80 303.1 355 49.0
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.2e-75 286.2 160 85.0
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 9.1e-69 264.2 160 76.2
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 4.5e-60 235.3 122 91.0
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 1.6e-57 226.9 154 69.5
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.0e-56 222.6 131 78.6
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.7e-36 156.4 135 60.7
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.0e-27 126.3 69 87.0
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 7.6e-23 111.7 62 77.4
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 1.9e-18 97.1 152 40.8
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 9.6e-18 94.7 122 50.8
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 3.4e-15 86.3 81 54.3
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 7.6e-15 85.1 45 82.2
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 4.2e-13 79.3 63 57.1
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 4.6e-12 75.9 79 49.4
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 1.1e-08 64.7 49 63.3
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.8e-08 63.9 82 48.8
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 4.9e-06 55.8 26 92.3


User provided reference genes

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