Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 9.0e-287 989.6 503 100.0
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 6.2e-203 711.1 503 73.6
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 4.9e-192 674.9 519 67.4
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 2.1e-171 606.3 495 63.4
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 6.5e-168 594.7 507 60.7
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 1.9e-167 593.2 516 61.0
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 2.1e-166 589.7 516 60.7
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 2.3e-165 586.3 493 61.5
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.9e-164 583.2 500 63.2
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 3.3e-164 582.4 493 61.3
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.4e-162 577.0 504 59.1
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 6.9e-162 574.7 501 59.1
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 6.9e-162 574.7 511 61.1
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 9.0e-162 574.3 488 62.5
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 5.9e-161 571.6 496 61.7
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 7.6e-161 571.2 534 58.1
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 1.9e-159 566.6 492 61.4
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 4.2e-159 565.5 497 60.0
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.8e-157 560.1 497 60.0
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 5.1e-157 558.5 486 61.7
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 5.1e-157 558.5 491 60.3
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 6.7e-157 558.1 491 58.5
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 8.7e-157 557.8 489 60.5
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-156 557.4 491 60.9
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 5.7e-156 555.1 492 59.3
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 5.7e-156 555.1 491 60.9
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 2.2e-155 553.1 500 61.0
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 2.8e-155 552.7 483 60.0
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 2.8e-155 552.7 491 59.9
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.7e-155 552.4 491 60.3
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 6.3e-155 551.6 487 58.9
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 6.3e-155 551.6 493 60.4
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 1.8e-154 550.1 489 60.7
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 2.4e-154 549.7 493 58.8
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 2.4e-154 549.7 493 59.2
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 2.4e-154 549.7 492 60.0
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 2.4e-154 549.7 493 59.2
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 3.1e-154 549.3 485 60.6
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 4.1e-154 548.9 484 58.3
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.5e-153 547.0 483 57.8
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 2.6e-153 546.2 484 58.7
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 2.6e-153 546.2 483 59.2
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.0e-152 544.3 486 61.1
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 2.2e-152 543.1 484 57.9
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 5.0e-152 542.0 486 58.2
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 5.0e-152 542.0 493 56.8
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 5.0e-152 542.0 491 59.5
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 8.5e-152 541.2 483 58.4
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 8.5e-152 541.2 483 58.4
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 8.5e-152 541.2 504 57.3
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 1.4e-151 540.4 487 57.9
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.4e-151 540.4 487 57.9
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 3.2e-151 539.3 494 58.1
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 3.2e-151 539.3 489 58.1
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 9.4e-151 537.7 495 57.6
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.2e-150 537.3 479 59.5
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 1.2e-150 537.3 493 59.0
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 4.6e-150 535.4 487 58.5
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 4.6e-150 535.4 487 58.5
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 6.1e-150 535.0 502 57.0
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 3.0e-149 532.7 497 57.1
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 6.7e-149 531.6 487 57.1
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 6.7e-149 531.6 492 58.3
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.3e-147 527.3 488 57.4
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.3e-147 527.3 500 56.6
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 2.2e-147 526.6 492 56.1
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 1.2e-145 520.8 566 53.2
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.9e-143 513.5 491 57.0
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 2.5e-143 513.1 488 57.0
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 1.2e-142 510.8 511 54.8
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 4.7e-142 508.8 510 54.9
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.4e-141 507.3 502 55.4
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.8e-141 506.9 458 58.7
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 2.3e-141 506.5 502 55.6
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 3.9e-141 505.8 509 54.4
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 7.4e-140 501.5 473 55.4
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 3.8e-136 489.2 441 59.2
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 6.5e-136 488.4 494 54.0
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-135 486.9 508 55.7
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 4.7e-134 482.3 436 58.3
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.3e-133 479.9 487 53.6
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 8.8e-133 478.0 441 59.2
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.5e-132 477.2 489 52.6
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 9.7e-132 474.6 446 56.1
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.7e-131 472.6 447 57.9
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.2e-129 467.6 489 54.2
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 2.0e-129 466.8 436 59.6
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 4.5e-129 465.7 437 58.8
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 8.0e-126 454.9 484 55.0
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 3.1e-122 443.0 495 50.7
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.6e-120 434.9 416 58.4
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 5.2e-117 425.6 392 58.9
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 2.6e-116 423.3 378 59.3
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 1.8e-114 417.2 384 61.5
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 7.0e-114 415.2 384 57.6
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 8.0e-110 401.7 392 55.4
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.4e-109 401.0 360 59.7
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.8e-109 398.7 486 49.8
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 8.9e-109 398.3 492 45.9
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.1e-106 391.3 373 56.3
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 1.4e-106 391.0 473 50.1
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 7.8e-105 385.2 503 46.3
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 5.0e-104 382.5 351 55.8
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 2.5e-103 380.2 488 46.7
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 4.9e-99 365.9 348 58.0
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 6.4e-99 365.5 577 41.9
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 1.6e-94 350.9 431 47.3
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-93 347.8 341 56.6
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 3.1e-93 346.7 390 51.8
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 4.0e-93 346.3 488 43.4
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 5.6e-87 325.9 292 57.9
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.0e-84 317.4 258 63.6
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 4.9e-83 312.8 332 51.8
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 6.6e-80 302.4 236 66.5
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-79 300.4 338 53.0
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 6.2e-78 295.8 229 66.8
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 6.9e-77 292.4 369 45.5
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 7.1e-74 282.3 235 62.6
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 9.3e-74 282.0 288 52.1
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.5e-73 280.0 370 46.8
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 8.1e-70 268.9 245 59.6
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.9e-69 265.8 272 54.8
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 7.6e-68 262.3 341 48.4
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.2e-65 255.0 214 61.2
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.8e-62 243.8 364 42.9
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 3.4e-60 236.9 366 42.9
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.3e-59 235.0 175 68.6
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 5.1e-56 223.0 424 37.7
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-55 221.5 161 66.5
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 7.4e-55 219.2 189 58.7
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 4.9e-51 206.5 497 32.2
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 9.3e-50 202.2 262 48.1
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 1.6e-49 201.4 202 51.5
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-47 195.3 238 47.9
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.3e-46 189.5 226 49.1
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-43 181.8 208 56.2
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.0e-43 179.9 193 52.3
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.6e-41 173.7 218 47.7
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.9e-40 170.2 147 61.2
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 4.8e-38 163.3 129 63.6
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 8.8e-32 142.5 481 27.9
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 6.3e-30 136.3 104 69.2
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 8.2e-30 136.0 110 65.5
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 5.3e-29 133.3 110 63.6
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 4.5e-28 130.2 110 63.6
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 9.4e-26 122.5 119 59.7
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 1.5e-23 115.2 525 25.1
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 2.4e-21 107.8 96 62.5
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 2.2e-19 101.3 120 42.5
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-18 98.6 99 54.5
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 6.1e-17 93.2 76 52.6
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 6.7e-16 89.7 64 71.9
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.8e-14 84.3 81 55.6
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 4.8e-14 83.6 197 32.0
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 8.3e-14 82.8 82 52.4
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.3e-13 80.1 78 55.1
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.0e-13 79.7 77 55.8
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 1.7e-11 75.1 87 43.7
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 5.0e-11 73.6 54 64.8
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 8.5e-11 72.8 79 49.4
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 2.7e-09 67.8 106 45.3
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.2e-08 63.5 39 76.9


User provided reference genes

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