Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G11731 Striga asiatica HOM05D002933 ORTHO05D007742 8.7e-148 526.9 266 100.0
SGA_v2.0_scaffold28G11736 Striga asiatica HOM05D002933 ORTHO05D007742 4.5e-59 232.3 189 69.3
SalBow5G4018 Salvia bowleyana HOM05D002933 ORTHO05D007742 1.6e-53 213.8 161 67.1
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 6.2e-53 211.8 161 66.5
MSTRG.22954 Avicennia marina HOM05D002933 ORTHO05D007742 2.6e-51 206.5 147 70.7
Nitab4.5_0001723g0030 Nicotiana tabacum HOM05D002933 ORTHO05D007742 5.8e-51 205.3 142 70.4
Nitab4.5_0001797g0060 Nicotiana tabacum HOM05D002933 ORTHO05D007742 1.3e-50 204.1 142 69.7
Cc11_g04720 Coffea canephora HOM05D002933 ORTHO05D007742 3.8e-50 202.6 172 58.7
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 4.9e-50 202.2 159 62.3
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 3.2e-49 199.5 164 58.5
Rhsim12G0149400 Rhododendron simsii HOM05D002933 ORTHO05D007742 4.2e-49 199.1 147 66.0
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 1.2e-48 197.6 150 64.7
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 1.6e-48 197.2 142 68.3
Potri.010G210200 Populus trichocarpa HOM05D002933 ORTHO05D007742 1.6e-48 197.2 141 67.4
CSS0020461 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 2.1e-48 196.8 165 58.8
CSS0042513 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 2.1e-48 196.8 165 58.8
Manes.07G111100 Manihot esculenta HOM05D002933 ORTHO05D007742 4.6e-48 195.7 156 64.1
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 1.0e-47 194.5 154 62.3
CiPaw.02G180700 Carya illinoinensis HOM05D002933 ORTHO05D007742 2.3e-47 193.4 158 63.3
Hma1.2p1_0060F.1_g032910 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 2.3e-47 193.4 142 65.5
Manes.10G038112 Manihot esculenta HOM05D002933 ORTHO05D007742 3.0e-47 193.0 156 65.4
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 5.1e-47 192.2 141 66.0
Sabra10G0162500 Salix brachista HOM05D002933 ORTHO05D007742 8.7e-47 191.4 141 66.0
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 1.9e-46 190.3 141 64.5
QL08p058666 Quercus lobata HOM05D002933 ORTHO05D007742 2.5e-46 189.9 158 62.7
GSVIVG01016618001 Vitis vinifera HOM05D002933 ORTHO05D007742 5.6e-46 188.7 139 68.3
Haze_17012 Corylus avellana HOM05D002933 ORTHO05D007742 1.3e-45 187.6 157 63.1
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 1.3e-45 187.6 141 63.8
Gorai.009G317700 Gossypium raimondii HOM05D002933 ORTHO05D007742 1.6e-45 187.2 141 65.2
Cfa001530 Carpinus fangiana HOM05D002933 ORTHO05D007742 2.8e-45 186.4 157 61.8
Lj1g0025916 Lotus japonicus HOM05D002933 ORTHO05D007742 3.7e-45 186.0 158 60.1
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 6.2e-45 185.3 141 63.8
Gohir.D05G300200 Gossypium hirsutum HOM05D002933 ORTHO05D007742 8.2e-45 184.9 140 65.0
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 8.2e-45 184.9 157 62.4
COL.COLO4_14919 Corchorus olitorius HOM05D002933 ORTHO05D007742 1.1e-44 184.5 146 65.1
Cpa.g.sc1.346 Carica papaya HOM05D002933 ORTHO05D007742 1.4e-44 184.1 153 62.1
Duzib114G0859 Durio zibethinus HOM05D002933 ORTHO05D007742 1.4e-44 184.1 139 67.6
Gohir.A05G300500 Gossypium hirsutum HOM05D002933 ORTHO05D007742 1.8e-44 183.7 141 64.5
arahy.Tifrunner.gnm1.ann1.55TXVJ Arachis hypogaea HOM05D002933 ORTHO05D007742 2.4e-44 183.3 158 60.8
arahy.Tifrunner.gnm1.ann1.XEQF22 Arachis hypogaea HOM05D002933 ORTHO05D007742 2.4e-44 183.3 158 60.8
Glyma.18G286500 Glycine max HOM05D002933 ORTHO05D007742 3.1e-44 183.0 156 61.5
Lj9A439T48 Lonicera japonica HOM05D002933 ORTHO05D007742 3.1e-44 183.0 142 62.0
PGR142G2901 Punica granatum HOM05D002933 ORTHO05D007742 3.1e-44 183.0 194 53.1
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 4.0e-44 182.6 143 62.9
Aqoxy4G03028 Aquilegia oxysepala HOM05D002933 ORTHO05D007742 5.3e-44 182.2 148 62.8
Hund09944 Selenicereus undatus HOM05D002933 ORTHO05D007742 9.0e-44 181.4 140 64.3
TAR623G1509 Trochodendron aralioides HOM05D002933 ORTHO05D007742 9.0e-44 181.4 141 63.1
TAR623G1657 Trochodendron aralioides HOM05D002933 ORTHO05D007742 9.0e-44 181.4 141 63.1
CANSAT56G0382 Cannabis sativa HOM05D002933 ORTHO05D007742 1.5e-43 180.6 158 60.1
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.5e-43 180.6 142 59.9
Eucgr.G02904 Eucalyptus grandis HOM05D002933 ORTHO05D007742 2.0e-43 180.3 157 60.5
Thecc.10G052500 Theobroma cacao HOM05D002933 ORTHO05D007742 2.0e-43 180.3 141 63.8
CsaV3_5G026220 Cucumis sativus L. HOM05D002933 ORTHO05D007742 2.6e-43 179.9 141 61.7
HanXRQChr05g0154341 Helianthus annuus HOM05D002933 ORTHO05D007742 2.6e-43 179.9 164 54.9
Sc12g0007090 Simmondsia chinensis HOM05D002933 ORTHO05D007742 2.6e-43 179.9 140 65.0
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 4.5e-43 179.1 143 61.5
Phvul.008G015100 Phaseolus vulgaris HOM05D002933 ORTHO05D007742 4.5e-43 179.1 156 60.9
Sed0016692 Sechium edule HOM05D002933 ORTHO05D007742 4.5e-43 179.1 140 63.6
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 5.8e-43 178.7 143 61.5
Lalb_Chr10g0091861 Lupinus albus HOM05D002933 ORTHO05D007742 7.6e-43 178.3 171 55.6
unitig_52.g17502 Utricularia gibba HOM05D002933 ORTHO05D007742 7.6e-43 178.3 170 58.2
ClCG09G020230 Citrullus lanatus HOM05D002933 ORTHO05D007742 1.0e-42 177.9 141 62.4
Prupe.2G229000 Prunus persica HOM05D002933 ORTHO05D007742 1.0e-42 177.9 157 61.1
Glyma.02G094900 Glycine max HOM05D002933 ORTHO05D007742 1.3e-42 177.6 129 69.0
MD01G1121300 Malus domestica HOM05D002933 ORTHO05D007742 1.7e-42 177.2 164 56.7
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 3.8e-42 176.0 141 59.6
AL5G36450 Arabidopsis lyrata HOM05D002933 ORTHO05D007742 4.9e-42 175.6 155 56.1
FAN03G0329 Fragaria x ananassa HOM05D002933 ORTHO05D007742 6.5e-42 175.3 147 61.9
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 8.4e-42 174.9 141 60.3
MELO3C025475.2 Cucumis melo HOM05D002933 ORTHO05D007742 1.1e-41 174.5 118 70.3
AT3G55330 Arabidopsis thaliana HOM05D002933 ORTHO05D007742 1.4e-41 174.1 155 55.5
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 1.4e-41 174.1 140 56.4
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 1.4e-41 174.1 140 56.4
RcHm_v2.0_Chr1g0365751 Rosa chinensis HOM05D002933 ORTHO05D007742 1.4e-41 174.1 141 62.4
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 1.9e-41 173.7 140 57.1
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 2.5e-41 173.3 167 52.1
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 3.2e-41 172.9 155 54.8
Nn2g10494 Nelumbo nucifera HOM05D002933 ORTHO05D007742 3.2e-41 172.9 118 69.5
Sp5g07140 Schrenkiella parvula HOM05D002933 ORTHO05D007742 3.2e-41 172.9 159 54.7
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 4.2e-41 172.6 160 56.2
C04p37150 Brassica napus HOM05D002933 ORTHO05D007742 5.5e-41 172.2 164 50.6
CARHR165310 Cardamine hirsuta HOM05D002933 ORTHO05D007742 7.1e-41 171.8 155 53.5
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 7.1e-41 171.8 140 61.4
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 9.3e-41 171.4 120 69.2
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 9.3e-41 171.4 147 60.5
FAN10G2797 Fragaria x ananassa HOM05D002933 ORTHO05D007742 9.3e-41 171.4 163 57.1
ECA246G3602 Erigeron canadensis HOM05D002933 ORTHO05D007742 1.2e-40 171.0 141 58.2
FvH4_7g21370 Fragaria vesca HOM05D002933 ORTHO05D007742 1.2e-40 171.0 147 60.5
FAN01G1038 Fragaria x ananassa HOM05D002933 ORTHO05D007742 1.2e-40 171.0 147 60.5
FAN06G1816 Fragaria x ananassa HOM05D002933 ORTHO05D007742 1.2e-40 171.0 147 60.5
FAN06G3199 Fragaria x ananassa HOM05D002933 ORTHO05D007742 1.2e-40 171.0 147 60.5
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 1.6e-40 170.6 140 55.7
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 1.6e-40 170.6 140 55.7
Atru.chr12.543 Acer truncatum HOM05D002933 ORTHO05D007742 2.7e-40 169.9 140 59.3
Psat6g169400 Pisum sativum HOM05D002933 ORTHO05D007742 3.5e-40 169.5 154 57.8
HPP92_016520 Vanilla planifolia HOM05D002933 ORTHO05D007742 3.5e-40 169.5 152 59.2
Medtr7g023290 Medicago truncatula HOM05D002933 ORTHO05D007742 6.0e-40 168.7 141 58.9
HPP92_027632 Vanilla planifolia HOM05D002933 ORTHO05D007742 7.9e-40 168.3 152 58.6
CDE07G0630 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 1.0e-39 167.9 143 59.4
THA.LOC104824268 Tarenaya hassleriana HOM05D002933 ORTHO05D007742 3.0e-39 166.4 140 60.0
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 3.9e-39 166.0 140 60.7
TWI38G1573 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 5.7e-38 162.2 141 56.7
CDE04G2678 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 1.3e-37 161.0 143 57.3
TPR.G15514 Trifolium pratense HOM05D002933 ORTHO05D007742 1.6e-37 160.6 153 55.6
ATR0033G026 Amborella trichopoda HOM05D002933 ORTHO05D007742 8.2e-37 158.3 140 57.9
vmacro16485 Vaccinium macrocarpon HOM05D002933 ORTHO05D007742 4.1e-36 156.0 113 61.1
Zm00001eb001650 Zea mays HOM05D002933 ORTHO05D007742 1.0e-34 151.4 119 62.2
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 1.3e-34 151.0 129 59.7
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 1.3e-34 151.0 142 54.9
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 9.3e-33 144.8 187 42.8
Pp3c2_13270 Physcomitrium patens HOM05D002933 ORTHO05D007742 1.1e-28 131.3 165 44.8
SMO367G0292 Selaginella moellendorffii HOM05D002933 ORTHO05D007742 3.1e-28 129.8 131 48.9
SMO367G0293 Selaginella moellendorffii HOM05D002933 ORTHO05D007742 3.1e-28 129.8 131 48.9
CBR_g72637 Chara braunii HOM05D002933 ORTHO05D007742 4.1e-28 129.4 146 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2816 Anthoceros agrestis HOM05D002933 ORTHO05D007742 1.5e-27 127.5 123 53.7
Hma1.2p1_0060F.1_g032920 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 3.8e-26 122.9 75 74.7
Potri.008G050300 Populus trichocarpa HOM05D002933 ORTHO05D007742 5.0e-26 122.5 131 52.7
Mapoly0040s0096 Marchantia polymorpha HOM05D002933 ORTHO05D007742 3.2e-25 119.8 141 43.3
Cre12.g509050 Chlamydomonas reinhardtii HOM05D002933 ORTHO05D007742 1.6e-24 117.5 146 46.6
Oeu057202.1 Olea europaea HOM05D002933 ORTHO05D007742 2.3e-23 113.6 89 62.9
MCO11G828 Micromonas commoda HOM05D002933 ORTHO05D007742 1.4e-20 104.4 144 37.5
Lsat_1_v5_gn_5_23660 Lactuca sativa HOM05D002933 ORTHO05D007742 2.4e-20 103.6 98 54.1
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 1.0e-18 98.2 168 35.7
TAR636G1208 Trochodendron aralioides HOM05D002933 ORTHO05D007742 5.0e-18 95.9 85 56.5
PRCOL_00000618 Prasinoderma coloniale HOM05D002933 ORTHO05D007742 6.5e-18 95.5 110 44.5
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 5.5e-17 92.4 163 33.7
BcaB01g00114 Brassica carinata HOM05D002933 ORTHO05D007742 9.4e-17 91.7 53 71.7
Glyma.20G239700 Glycine max HOM05D002933 ORTHO05D009221 6.1e-16 89.0 170 33.5
Glyma.10G290700 Glycine max HOM05D002933 ORTHO05D009221 5.2e-15 85.9 177 31.6
Thhalv10017187m.g Eutrema salsugineum HOM05D002933 ORTHO05D009221 6.7e-15 85.5 140 33.6
Lalb_Chr21g0307341 Lupinus albus HOM05D002933 ORTHO05D009221 8.8e-15 85.1 105 39.0
BcaB02g09116 Brassica carinata HOM05D002933 ORTHO05D009221 1.1e-14 84.7 140 33.6
AUR62022518 Chenopodium quinoa HOM05D002933 ORTHO05D009221 1.1e-14 84.7 144 32.6
DCAR_015210 Daucus carota HOM05D002933 ORTHO05D009221 1.1e-14 84.7 158 33.5
AL4G36860 Arabidopsis lyrata HOM05D002933 ORTHO05D009221 1.5e-14 84.3 149 32.9
Carub.0004s2154 Capsella rubella HOM05D002933 ORTHO05D009221 1.5e-14 84.3 140 32.9
A05p06910 Brassica napus HOM05D002933 ORTHO05D009221 2.0e-14 84.0 141 35.5
Manes.10G034800 Manihot esculenta HOM05D002933 ORTHO05D009221 2.0e-14 84.0 128 34.4
BraA05t19656Z Brassica rapa HOM05D002933 ORTHO05D009221 2.6e-14 83.6 152 32.9
Glyma.20G098500 Glycine max HOM05D002933 ORTHO05D009221 2.6e-14 83.6 166 33.7
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 3.3e-14 83.2 116 37.1
THA.LOC104824260 Tarenaya hassleriana HOM05D002933 ORTHO05D009221 3.3e-14 83.2 139 35.3
EL10Ac2g03451 Beta vulgaris HOM05D002933 ORTHO05D009221 4.4e-14 82.8 163 31.3
CARHR134340 Cardamine hirsuta HOM05D002933 ORTHO05D009221 5.7e-14 82.4 140 32.1
AL463U10010 Arabidopsis lyrata HOM05D002933 ORTHO05D009221 7.4e-14 82.0 149 32.2
BolC4t22428H Brassica oleracea HOM05D002933 ORTHO05D009221 7.4e-14 82.0 109 37.6
BcaC02g12077 Brassica carinata HOM05D002933 ORTHO05D009221 9.7e-14 81.6 134 34.3
C04p08180 Brassica napus HOM05D002933 ORTHO05D009221 9.7e-14 81.6 126 35.7
Lj5g0017951 Lotus japonicus HOM05D002933 ORTHO05D009221 1.3e-13 81.3 156 33.3
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 1.3e-13 81.3 142 31.7
Phvul.007G010700 Phaseolus vulgaris HOM05D002933 ORTHO05D009221 1.7e-13 80.9 164 32.3
PSO339G0478 Papaver somniferum HOM05D002933 ORTHO05D009221 2.2e-13 80.5 153 31.4
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 2.8e-13 80.1 141 32.6
VMungo0720G1641 Vigna mungo HOM05D002933 ORTHO05D009221 2.8e-13 80.1 161 32.9
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 3.7e-13 79.7 115 33.9
Zm00001eb012750 Zea mays HOM05D002933 ORTHO05D009221 4.8e-13 79.3 113 36.3
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 6.3e-13 79.0 153 32.0
PSO206G0047 Papaver somniferum HOM05D002933 ORTHO05D009221 1.1e-12 78.2 153 30.7
Os03g0279950 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D009221 1.4e-12 77.8 118 35.6
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 2.4e-12 77.0 142 33.1
SalBow6G6093 Salvia bowleyana HOM05D002933 ORTHO05D009221 2.4e-12 77.0 181 30.9
Medtr1g115410 Medicago truncatula HOM05D002933 ORTHO05D009221 1.2e-11 74.7 156 30.8
Oeu038794.2 Olea europaea HOM05D002933 ORTHO05D009221 1.6e-11 74.3 129 33.3
arahy.Tifrunner.gnm1.ann1.I4CVDG Arachis hypogaea HOM05D002933 ORTHO05D009221 5.9e-11 72.4 119 34.5
arahy.Tifrunner.gnm1.ann1.PIZC5V Arachis hypogaea HOM05D002933 ORTHO05D009221 5.9e-11 72.4 119 34.5
A09p48210 Brassica napus HOM05D002933 ORTHO05D007742 2.9e-10 70.1 42 64.3
C08p30490 Brassica napus HOM05D002933 ORTHO05D007742 1.5e-09 67.8 53 52.8
Psat6g236720 Pisum sativum HOM05D002933 ORTHO05D009221 4.2e-09 66.2 99 38.4
AUR62035952 Chenopodium quinoa HOM05D002933 ORTHO05D009221 1.2e-06 58.2 107 35.5


User provided reference genes

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