Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold289G47278 Striga asiatica HOM05D037813 ORTHO05D006699 2.1e-117 425.6 207 100.0
SGA_v2.0_scaffold186G40210 Striga asiatica HOM05D005437 ORTHO05D006699 5.4e-28 128.6 75 86.7
SGA_v2.0_scaffold296G47562 Striga asiatica HOM05D037813 ORTHO05D399398 2.3e-23 113.2 60 80.0
SalBow8G5394 Salvia bowleyana HOM05D005437 ORTHO05D006699 8.3e-21 104.8 74 68.9
Migut.M01548 Erythranthe guttata HOM05D005437 ORTHO05D006699 3.2e-20 102.8 75 66.7
SGA_v2.0_scaffold66G22358 Striga asiatica HOM05D037813 ORTHO05D399837 2.1e-19 100.1 48 85.4
Oeu036617.1 Olea europaea HOM05D005437 ORTHO05D006699 1.1e-17 94.4 77 57.1
SGA_v2.0_scaffold14G06817 Striga asiatica HOM05D000362 ORTHO05D034040 1.5e-17 94.0 104 52.9
GSVIVG01020355001 Vitis vinifera HOM05D005437 ORTHO05D006699 7.3e-17 91.7 75 56.0
Nitab4.5_0002321g0070 Nicotiana tabacum HOM05D005437 ORTHO05D006699 9.5e-17 91.3 82 53.7
Peaxi162Scf00452g00721 Petunia axillaris HOM05D005437 ORTHO05D006699 1.6e-16 90.5 74 58.1
Rhsim06G0239800 Rhododendron simsii HOM05D005437 ORTHO05D006699 3.6e-16 89.4 75 56.0
PGSC0003DMG400022125 Solanum tuberosum HOM05D005437 ORTHO05D006699 4.7e-16 89.0 75 53.3
Nitab4.5_0001080g0010 Nicotiana tabacum HOM05D005437 ORTHO05D006699 6.2e-16 88.6 75 54.7
CSS0042223 Camellia sinensis var. sinensis HOM05D005437 ORTHO05D006699 8.1e-16 88.2 75 56.0
HanXRQChr11g0335011 Helianthus annuus HOM05D005437 ORTHO05D006699 1.1e-15 87.8 75 58.7
Solyc07g066480.3 Solanum lycopersicum HOM05D005437 ORTHO05D006699 1.1e-15 87.8 75 53.3
Hma1.2p1_0637F.1_g193460 Hydrangea macrophylla HOM05D005437 ORTHO05D006699 1.4e-15 87.4 74 58.1
Dinv19612 Davidia involucrata HOM05D005437 ORTHO05D006699 2.4e-15 86.7 75 54.7
Sopen07g034660 Solanum pennellii HOM05D005437 ORTHO05D006699 5.2e-15 85.5 75 52.0
Actinidia12783 Actinidia chinensis HOM05D005437 ORTHO05D006699 1.2e-14 84.3 75 53.3
Cc05_g16200 Coffea canephora HOM05D005437 ORTHO05D006699 1.5e-14 84.0 74 54.1
ECA236G0150 Erigeron canadensis HOM05D005437 ORTHO05D006699 1.5e-14 84.0 82 54.9
Manes.06G173000 Manihot esculenta HOM05D005437 ORTHO05D006699 1.5e-14 84.0 93 45.2
Glyma.09G002300 Glycine max HOM05D005437 ORTHO05D006699 2.0e-14 83.6 76 53.9
AUR62011473 Chenopodium quinoa HOM05D005437 ORTHO05D006699 2.6e-14 83.2 77 51.9
arahy.Tifrunner.gnm1.ann1.K3W397 Arachis hypogaea HOM05D005437 ORTHO05D006699 5.8e-14 82.0 82 47.6
Aa31LG7G1090 Aethionema arabicum HOM05D005437 ORTHO05D006699 7.6e-14 81.6 67 55.2
Lsat_1_v5_gn_7_111601 Lactuca sativa HOM05D005437 ORTHO05D006699 7.6e-14 81.6 77 55.8
VMungo1127G0204 Vigna mungo HOM05D005437 ORTHO05D006699 7.6e-14 81.6 75 49.3
CAN.G943.42 Capsicum annuum HOM05D005437 ORTHO05D006699 9.9e-14 81.3 75 52.0
Ca_19805_v3 Cicer arietinum L. HOM05D005437 ORTHO05D006699 9.9e-14 81.3 72 52.8
Potri.007G066400 Populus trichocarpa HOM05D005437 ORTHO05D006699 9.9e-14 81.3 75 50.7
arahy.Tifrunner.gnm1.ann1.49XUJ3 Arachis hypogaea HOM05D005437 ORTHO05D006699 1.3e-13 80.9 82 46.3
Eucgr.F01464 Eucalyptus grandis HOM05D005437 ORTHO05D006699 1.3e-13 80.9 58 69.0
Lj3g0019331 Lotus japonicus HOM05D005437 ORTHO05D006699 2.2e-13 80.1 84 50.0
FAN21G1213 Fragaria x ananassa HOM05D005437 ORTHO05D006699 2.9e-13 79.7 93 45.2
Nn7g37999 Nelumbo nucifera HOM05D005437 ORTHO05D006699 2.9e-13 79.7 75 53.3
Phvul.011G216100 Phaseolus vulgaris HOM05D005437 ORTHO05D006699 2.9e-13 79.7 75 46.7
Psat7g228480 Pisum sativum HOM05D005437 ORTHO05D006699 2.9e-13 79.7 81 46.9
Lalb_Chr01g0008201 Lupinus albus HOM05D005437 ORTHO05D006699 3.8e-13 79.3 82 47.6
Sc20g0003070 Simmondsia chinensis HOM05D005437 ORTHO05D006699 3.8e-13 79.3 84 48.8
QL04p076801 Quercus lobata HOM05D005437 ORTHO05D006699 4.9e-13 79.0 72 51.4
Prupe.4G138400 Prunus persica HOM05D005437 ORTHO05D006699 6.4e-13 78.6 75 50.7
Sabra07G0053300 Salix brachista HOM05D005437 ORTHO05D006699 6.4e-13 78.6 75 49.3
AL1G28710 Arabidopsis lyrata HOM05D005437 ORTHO05D006699 8.4e-13 78.2 60 58.3
AT1G16540 Arabidopsis thaliana HOM05D005437 ORTHO05D006699 8.4e-13 78.2 78 46.2
FvH4_3g15600 Fragaria vesca HOM05D005437 ORTHO05D006699 8.4e-13 78.2 75 49.3
FAN11G3430 Fragaria x ananassa HOM05D005437 ORTHO05D006699 8.4e-13 78.2 75 49.3
FAN16G0636 Fragaria x ananassa HOM05D005437 ORTHO05D006699 8.4e-13 78.2 75 49.3
Ciclev10004324m.g Citrus clementina HOM05D005437 ORTHO05D006699 1.1e-12 77.8 77 48.1
COL.COLO4_36739 Corchorus olitorius HOM05D005437 ORTHO05D006699 1.1e-12 77.8 75 46.7
BcaC05g25518 Brassica carinata HOM05D005437 ORTHO05D006699 1.4e-12 77.4 78 43.6
BolC5t30200H Brassica oleracea HOM05D005437 ORTHO05D006699 1.4e-12 77.4 78 43.6
Carub.0001s1630 Capsella rubella HOM05D005437 ORTHO05D006699 1.4e-12 77.4 60 56.7
CsaV3_6G013680 Cucumis sativus L. HOM05D005437 ORTHO05D006699 1.4e-12 77.4 75 48.0
TPR.G34170 Trifolium pratense HOM05D005437 ORTHO05D006699 1.9e-12 77.0 81 45.7
EL10Ac9g21866 Beta vulgaris HOM05D005437 ORTHO05D006699 2.4e-12 76.6 77 48.1
RcHm_v2.0_Chr5g0026221 Rosa chinensis HOM05D005437 ORTHO05D006699 2.4e-12 76.6 75 48.0
PGR102G1747 Punica granatum HOM05D005437 ORTHO05D006699 3.2e-12 76.3 75 42.7
A06p12540 Brassica napus HOM05D005437 ORTHO05D006699 4.2e-12 75.9 60 53.3
BraA06t24417Z Brassica rapa HOM05D005437 ORTHO05D006699 4.2e-12 75.9 60 53.3
THA.LOC104812356 Tarenaya hassleriana HOM05D005437 ORTHO05D006699 4.2e-12 75.9 78 43.6
C05p14850 Brassica napus HOM05D005437 ORTHO05D006699 5.4e-12 75.5 78 42.3
Thhalv10006808m.g Eutrema salsugineum HOM05D005437 ORTHO05D006699 5.4e-12 75.5 60 55.0
Sed0015468 Sechium edule HOM05D005437 ORTHO05D006699 7.1e-12 75.1 75 46.7
Medtr4g030930 Medicago truncatula HOM05D005437 ORTHO05D006699 1.2e-11 74.3 74 45.9
MD05G1221200 Malus domestica HOM05D005437 ORTHO05D006699 1.6e-11 73.9 75 48.0
Sp1g14710 Schrenkiella parvula HOM05D005437 ORTHO05D006699 1.6e-11 73.9 78 43.6
CANSAT80G2640 Cannabis sativa HOM05D005437 ORTHO05D006699 2.1e-11 73.6 83 48.2
Duzib268G1426 Durio zibethinus HOM05D005437 ORTHO05D006699 2.1e-11 73.6 86 45.3
CiPaw.11G065200 Carya illinoinensis HOM05D005437 ORTHO05D006699 2.7e-11 73.2 58 56.9
Duzib213G0844 Durio zibethinus HOM05D005437 ORTHO05D006699 2.7e-11 73.2 75 48.0
Gorai.002G036800 Gossypium raimondii HOM05D005437 ORTHO05D006699 2.7e-11 73.2 75 48.0
Thecc.07G149800 Theobroma cacao HOM05D005437 ORTHO05D006699 2.7e-11 73.2 75 45.3
MELO3C019659.2 Cucumis melo HOM05D005437 ORTHO05D006699 4.6e-11 72.4 75 46.7
Gohir.A01G039700 Gossypium hirsutum HOM05D005437 ORTHO05D006699 6.0e-11 72.0 75 46.7
Gohir.D01G027500 Gossypium hirsutum HOM05D005437 ORTHO05D006699 6.0e-11 72.0 75 46.7
Zm00001eb389990 Zea mays HOM05D005437 ORTHO05D006699 7.8e-11 71.6 75 50.7
PSO675G2460 Papaver somniferum HOM05D005437 ORTHO05D006699 1.3e-10 70.9 75 49.3
Aqoxy1G01551_Aqoxy1G01552 Aquilegia oxysepala HOM05D005437 ORTHO05D006699 2.3e-10 70.1 53 60.4
CDE02G3212 Ceratophyllum demersum HOM05D005437 ORTHO05D006699 2.3e-10 70.1 72 51.4
SGA_v2.0_scaffold37G14926 Striga asiatica HOM05D000362 ORTHO05D034040 3.9e-10 69.3 94 45.7
Os06g0670000 Oryza sativa ssp. japonica HOM05D005437 ORTHO05D006699 5.1e-10 68.9 78 47.4
Zm00001eb274240 Zea mays HOM05D005437 ORTHO05D006699 1.1e-09 67.8 75 46.7
TWI39G0192 Tripterygium wilfordii HOM05D005437 ORTHO05D006699 3.3e-09 66.2 75 42.7
Mapoly0055s0057 Marchantia polymorpha HOM05D005437 ORTHO05D006699 1.1e-07 61.2 48 58.3
HPP92_026356 Vanilla planifolia HOM05D005437 ORTHO05D006699 2.4e-07 60.1 74 43.2
ATR0763G170 Amborella trichopoda HOM05D005437 ORTHO05D006699 3.1e-07 59.7 75 41.3
SHI21431 Sapria himalayana HOM05D005437 ORTHO05D002750 6.9e-07 58.5 72 41.7
SEGI_23870 Sequoiadendron giganteum HOM05D005437 ORTHO05D006699 1.2e-06 57.8 60 48.3
SGA_v2.0_scaffold1783G54038 Striga asiatica HOM05D002789 ORTHO05D003185 1.5e-06 57.4 30 90.0
AUR62016581 Chenopodium quinoa HOM05D005437 ORTHO05D006699 3.4e-06 56.2 37 64.9


User provided reference genes

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