Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold288G47234 Striga asiatica HOM05D017394 ORTHO05D001737 3.7e-94 348.2 178 100.0
SGA_v2.0_scaffold113G31714 Striga asiatica HOM05D017394 ORTHO05D001737 2.4e-40 169.5 182 61.0
SGA_v2.0_scaffold37G14762 Striga asiatica HOM05D017394 ORTHO05D001737 6.9e-40 167.9 183 61.2
SGA_v2.0_scaffold142G35665 Striga asiatica HOM05D017394 ORTHO05D001737 6.5e-38 161.4 177 58.8
MSTRG.4940 Avicennia marina HOM05D001878 ORTHO05D001737 1.4e-16 90.5 295 32.9
SGA_v2.0_scaffold50G18423 Striga asiatica HOM05D056464 ORTHO05D001737 1.8e-16 90.1 72 70.8
SGA_v2.0_scaffold191G40486 Striga asiatica HOM05D017394 ORTHO05D001737 2.4e-16 89.7 184 45.1
unitig_0.g2758 Utricularia gibba HOM05D001878 ORTHO05D001737 3.4e-15 85.9 140 44.3
Oeu026349.1 Olea europaea HOM05D001878 ORTHO05D001737 1.3e-14 84.0 149 41.6
unitig_748.g7119 Utricularia gibba HOM05D001878 ORTHO05D001737 1.3e-14 84.0 140 44.3
SalBow5G0976 Salvia bowleyana HOM05D007698 ORTHO05D009663 6.5e-14 81.6 62 67.7
SalBow5G4762 Salvia bowleyana HOM05D007698 ORTHO05D009663 6.5e-14 81.6 62 67.7
Oeu037430.1 Olea europaea HOM05D001878 ORTHO05D001737 4.2e-13 79.0 297 30.0
Migut.N01727 Erythranthe guttata HOM05D001878 ORTHO05D001737 5.5e-13 78.6 56 67.9
Oeu019262.1 Olea europaea HOM05D001878 ORTHO05D001737 1.2e-12 77.4 273 32.6
Peaxi162Scf00853g00433 Petunia axillaris HOM05D001878 ORTHO05D001737 2.7e-12 76.3 69 62.3
SGA_v2.0_scaffold332G48948 Striga asiatica HOM05D017394 ORTHO05D001737 2.7e-12 76.3 127 45.7
Lsat_1_v5_gn_1_84200 Lactuca sativa HOM05D001878 ORTHO05D001737 4.7e-12 75.5 81 55.6
SGA_v2.0_scaffold77G25265 Striga asiatica HOM05D001878 ORTHO05D001737 1.8e-11 73.6 112 40.2
Hma1.2p1_0632F.1_g192450 Hydrangea macrophylla HOM05D001878 ORTHO05D001737 3.0e-11 72.8 69 58.0
SGA_v2.0_scaffold50G18424 Striga asiatica HOM05D017394 ORTHO05D001737 8.8e-11 71.2 43 86.0
Dinv43604 Davidia involucrata HOM05D001878 ORTHO05D001737 1.1e-10 70.9 73 56.2
Nitab4.5_0011684g0010 Nicotiana tabacum HOM05D001878 ORTHO05D001737 1.5e-10 70.5 76 56.6
Sopen01g035660 Solanum pennellii HOM05D001878 ORTHO05D001737 1.5e-10 70.5 121 39.7
Solyc01g088820.2 Solanum lycopersicum HOM05D001878 ORTHO05D001737 2.6e-10 69.7 121 39.7
Dinv44041 Davidia involucrata HOM05D001878 ORTHO05D001737 3.3e-10 69.3 67 58.2
Nitab4.5_0000563g0150 Nicotiana tabacum HOM05D001878 ORTHO05D001737 3.3e-10 69.3 129 39.5
CANSAT25G3641 Cannabis sativa HOM05D001878 ORTHO05D001737 4.4e-10 68.9 69 56.5
CAN.G756.42 Capsicum annuum HOM05D001878 ORTHO05D001737 4.4e-10 68.9 78 52.6
TWI14G1354 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 7.4e-10 68.2 70 57.1
TWI59G0138 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 7.4e-10 68.2 76 53.9
Duzib133G0474 Durio zibethinus HOM05D001878 ORTHO05D001737 9.7e-10 67.8 65 58.5
Gohir.A08G139800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 9.7e-10 67.8 71 57.7
Gohir.D08G160800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 9.7e-10 67.8 71 57.7
Gorai.004G167100 Gossypium raimondii HOM05D001878 ORTHO05D001737 9.7e-10 67.8 71 57.7
Potri.014G051200 Populus trichocarpa HOM05D001878 ORTHO05D001737 9.7e-10 67.8 56 64.3
Sed0021214 Sechium edule HOM05D001878 ORTHO05D001737 9.7e-10 67.8 69 52.2
COL.COLO4_18392 Corchorus olitorius HOM05D001878 ORTHO05D001737 1.3e-09 67.4 65 58.5
Lsat_1_v5_gn_4_40001 Lactuca sativa HOM05D001878 ORTHO05D001737 1.3e-09 67.4 78 51.3
Thecc.01G400100 Theobroma cacao HOM05D001878 ORTHO05D001737 1.3e-09 67.4 65 58.5
Cpa.g.sc41.83 Carica papaya HOM05D001878 ORTHO05D001737 1.7e-09 67.0 65 55.4
MELO3C006287.2 Cucumis melo HOM05D001878 ORTHO05D001737 1.7e-09 67.0 66 54.5
CsaV3_3G010680 Cucumis sativus L. HOM05D001878 ORTHO05D001737 1.7e-09 67.0 66 54.5
Glyma.08G051800 Glycine max HOM05D001878 ORTHO05D001737 1.7e-09 67.0 56 66.1
Duzib268G0102 Durio zibethinus HOM05D001878 ORTHO05D001737 2.2e-09 66.6 66 56.1
Potri.002G139500 Populus trichocarpa HOM05D001878 ORTHO05D001737 2.2e-09 66.6 56 62.5
Sabra14G0036200 Salix brachista HOM05D001878 ORTHO05D001737 2.2e-09 66.6 56 62.5
Sabra14G0038300 Salix brachista HOM05D001878 ORTHO05D001737 2.2e-09 66.6 56 62.5
PGSC0003DMG400001696 Solanum tuberosum HOM05D001878 ORTHO05D001737 2.2e-09 66.6 121 38.8
HanXRQChr01g0017711 Helianthus annuus HOM05D001878 ORTHO05D001737 2.8e-09 66.2 57 63.2
MBI04_g13859_MAGBIO Magnolia biondii HOM05D001878 ORTHO05D001737 2.8e-09 66.2 143 35.7
Glyma.07G254502 Glycine max HOM05D001878 ORTHO05D001737 3.7e-09 65.9 56 64.3
Lalb_Chr07g0177461 Lupinus albus HOM05D001878 ORTHO05D001737 3.7e-09 65.9 144 37.5
DCAR_029489 Daucus carota HOM05D001878 ORTHO05D001737 4.8e-09 65.5 62 56.5
Manes.05G056800 Manihot esculenta HOM05D001878 ORTHO05D001737 4.8e-09 65.5 70 55.7
Phvul.003G097500 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 4.8e-09 65.5 56 64.3
VMungo1215G1720 Vigna mungo HOM05D001878 ORTHO05D001737 4.8e-09 65.5 56 64.3
Cfa011046 Carpinus fangiana HOM05D001878 ORTHO05D001737 6.3e-09 65.1 66 56.1
CiPaw.13G024400 Carya illinoinensis HOM05D001878 ORTHO05D001737 6.3e-09 65.1 70 55.7
CiPaw.14G018500 Carya illinoinensis HOM05D001878 ORTHO05D001737 6.3e-09 65.1 67 53.7
Haze_02877 Corylus avellana HOM05D001878 ORTHO05D001737 6.3e-09 65.1 66 56.1
Lj4g0024312 Lotus japonicus HOM05D001878 ORTHO05D001737 6.3e-09 65.1 56 64.3
Atru.chr5.102 Acer truncatum HOM05D001878 ORTHO05D001737 8.2e-09 64.7 120 39.2
Prupe.2G121200 Prunus persica HOM05D001878 ORTHO05D001737 8.2e-09 64.7 70 54.3
HanXRQChr01g0016011 Helianthus annuus HOM05D001878 ORTHO05D001737 1.4e-08 63.9 81 49.4
Lsat_1_v5_gn_6_94181 Lactuca sativa HOM05D001878 ORTHO05D001737 1.4e-08 63.9 77 46.8
PGR042G1541 Punica granatum HOM05D001878 ORTHO05D001737 1.4e-08 63.9 58 60.3
THA.LOC104802500 Tarenaya hassleriana HOM05D001878 ORTHO05D001737 1.4e-08 63.9 62 56.5
Lalb_Chr07g0195291 Lupinus albus HOM05D001878 ORTHO05D001737 1.8e-08 63.5 66 50.0
Lsat_1_v5_gn_1_84280 Lactuca sativa HOM05D001878 ORTHO05D001737 2.4e-08 63.2 66 57.6
MD07G1097300 Malus domestica HOM05D001878 ORTHO05D001737 2.4e-08 63.2 70 54.3
SGA_v2.0_scaffold143G35746 Striga asiatica HOM05D056464 ORTHO05D001737 2.4e-08 63.2 52 69.2
Ciclev10020863m.g Citrus clementina HOM05D001878 ORTHO05D001737 3.1e-08 62.8 56 58.9
Sed0011776 Sechium edule HOM05D001878 ORTHO05D001737 3.1e-08 62.8 118 37.3
Ca_21569_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 4.1e-08 62.4 56 62.5
FvH4_7g09240 Fragaria vesca HOM05D001878 ORTHO05D001737 4.1e-08 62.4 56 58.9
Lj1g0024989 Lotus japonicus HOM05D001878 ORTHO05D001737 4.1e-08 62.4 60 58.3
QL04p028592 Quercus lobata HOM05D001878 ORTHO05D001737 4.1e-08 62.4 66 53.0
QL04p028713 Quercus lobata HOM05D001878 ORTHO05D001737 4.1e-08 62.4 66 53.0
RcHm_v2.0_Chr1g0345291 Rosa chinensis HOM05D001878 ORTHO05D001737 4.1e-08 62.4 56 58.9
RcHm_v2.0_Chr7g0205651 Rosa chinensis HOM05D001878 ORTHO05D001737 7.0e-08 61.6 52 61.5
Lalb_Chr12g0210451 Lupinus albus HOM05D001878 ORTHO05D001737 9.1e-08 61.2 55 60.0
MD02G1219900 Malus domestica HOM05D001878 ORTHO05D001737 9.1e-08 61.2 69 53.6
Lalb_Chr13g0290701 Lupinus albus HOM05D001878 ORTHO05D001737 1.2e-07 60.8 87 48.3
FAN01G1421 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.6e-07 60.5 73 50.7
FAN03G2199 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.6e-07 60.5 73 50.7
FAN06G0367 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.6e-07 60.5 73 50.7
FAN06G1067 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.6e-07 60.5 73 50.7
FAN10G3061 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.6e-07 60.5 73 50.7
FAN10G3306 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.6e-07 60.5 73 50.7
HanXRQChr14g0443931 Helianthus annuus HOM05D001878 ORTHO05D001737 1.6e-07 60.5 68 58.8
Medtr4g117990 Medicago truncatula HOM05D001878 ORTHO05D001737 2.0e-07 60.1 56 60.7
Nn1g00752 Nelumbo nucifera HOM05D001878 ORTHO05D001737 2.0e-07 60.1 62 53.2
Psat4g031080 Pisum sativum HOM05D001878 ORTHO05D001737 2.0e-07 60.1 56 58.9
TPR.G28130 Trifolium pratense HOM05D001878 ORTHO05D001737 2.0e-07 60.1 56 58.9
CSS0023471 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 2.6e-07 59.7 213 32.4
Lsat_1_v5_gn_3_15241 Lactuca sativa HOM05D001878 ORTHO05D001737 3.5e-07 59.3 69 50.7
SHI13627 Sapria himalayana HOM05D001878 ORTHO05D001737 3.5e-07 59.3 64 53.1
BcaB02g08851 Brassica carinata HOM05D001878 ORTHO05D001737 4.5e-07 58.9 73 49.3
BcaC02g12279 Brassica carinata HOM05D001878 ORTHO05D001737 4.5e-07 58.9 73 49.3
BcaC01g05198 Brassica carinata HOM05D001878 ORTHO05D001737 5.9e-07 58.5 64 54.7
BcaC01g05200 Brassica carinata HOM05D001878 ORTHO05D001737 5.9e-07 58.5 64 54.7
C03p29660 Brassica napus HOM05D001878 ORTHO05D001737 5.9e-07 58.5 64 54.7
BolC3t15314H Brassica oleracea HOM05D001878 ORTHO05D001737 5.9e-07 58.5 64 54.7
CSS0013278 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 5.9e-07 58.5 112 42.0
Sc14g0001740 Simmondsia chinensis HOM05D001878 ORTHO05D001737 5.9e-07 58.5 76 50.0
TAR375G1013 Trochodendron aralioides HOM05D001878 ORTHO05D001737 5.9e-07 58.5 69 47.8
A03p24870 Brassica napus HOM05D001878 ORTHO05D001737 7.7e-07 58.2 102 40.2
BraA03t11694Z Brassica rapa HOM05D001878 ORTHO05D001737 7.7e-07 58.2 102 40.2
Ca_08044_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 7.7e-07 58.2 60 56.7
ECA246G4246 Erigeron canadensis HOM05D001878 ORTHO05D001737 7.7e-07 58.2 64 50.0
Psat3g099720 Pisum sativum HOM05D001878 ORTHO05D001737 7.7e-07 58.2 60 56.7
Rhsim01G0141600 Rhododendron simsii HOM05D001878 ORTHO05D001737 7.7e-07 58.2 66 51.5
SGA_v2.0_scaffold143G35747 Striga asiatica HOM05D017394 ORTHO05D001737 7.7e-07 58.2 48 68.8
Aa31LG1G26270 Aethionema arabicum HOM05D001878 ORTHO05D001737 1.0e-06 57.8 78 43.6
Ah.01g019780 Amaranthus hybridus HOM05D001878 ORTHO05D001737 1.0e-06 57.8 55 56.4
HanXRQChr11g0344011 Helianthus annuus HOM05D001878 ORTHO05D001737 1.0e-06 57.8 65 47.7
Hma1.2p1_0840F.1_g226660 Hydrangea macrophylla HOM05D001878 ORTHO05D001737 1.0e-06 57.8 100 42.0
Glyma.18G248000 Glycine max HOM05D001878 ORTHO05D001737 1.3e-06 57.4 81 44.4
Phvul.008G049300 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 1.3e-06 57.4 65 49.2
Sp4g26780 Schrenkiella parvula HOM05D001878 ORTHO05D001737 1.3e-06 57.4 115 40.0
EL10Ac9g21782 Beta vulgaris HOM05D001878 ORTHO05D001737 1.7e-06 57.0 56 57.1
CSS0031983 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 1.7e-06 57.0 196 30.1
Carub.0004s2728 Capsella rubella HOM05D001878 ORTHO05D001737 1.7e-06 57.0 53 58.5
AUR62007169 Chenopodium quinoa HOM05D001878 ORTHO05D001737 1.7e-06 57.0 73 50.7
Thhalv10001488m.g Eutrema salsugineum HOM05D001878 ORTHO05D001737 2.2e-06 56.6 60 53.3
VMungo1383G0933 Vigna mungo HOM05D001878 ORTHO05D001737 2.2e-06 56.6 65 49.2
ECA248G2444 Erigeron canadensis HOM05D001878 ORTHO05D001737 2.9e-06 56.2 58 53.4
Nitab4.5_0000185g0200 Nicotiana tabacum HOM05D001878 ORTHO05D001737 2.9e-06 56.2 57 56.1
Nitab4.5_0006594g0090 Nicotiana tabacum HOM05D001878 ORTHO05D001737 2.9e-06 56.2 57 56.1
SGA_v2.0_scaffold94G28622 Striga asiatica HOM05D001878 ORTHO05D001737 2.9e-06 56.2 59 50.8
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 3.8e-06 55.8 69 50.7
HanXRQChr17g0533971 Helianthus annuus HOM05D001878 ORTHO05D001737 3.8e-06 55.8 74 45.9
Lsat_1_v5_gn_3_15221 Lactuca sativa HOM05D001878 ORTHO05D001737 3.8e-06 55.8 63 50.8
Sc07g0009050 Simmondsia chinensis HOM05D001878 ORTHO05D001737 3.8e-06 55.8 105 39.0
BcaC01g05201 Brassica carinata HOM05D001878 ORTHO05D001737 5.0e-06 55.5 53 56.6
BcaC02g12281 Brassica carinata HOM05D001878 ORTHO05D001737 5.0e-06 55.5 53 54.7
A05p04860 Brassica napus HOM05D001878 ORTHO05D001737 5.0e-06 55.5 53 54.7
C04p05690 Brassica napus HOM05D001878 ORTHO05D001737 5.0e-06 55.5 53 54.7
BolC4t22199H Brassica oleracea HOM05D001878 ORTHO05D001737 5.0e-06 55.5 53 54.7
BraA05t19461Z Brassica rapa HOM05D001878 ORTHO05D001737 5.0e-06 55.5 53 54.7
Medtr7g081190 Medicago truncatula HOM05D001878 ORTHO05D001737 6.5e-06 55.1 61 54.1
SalBow4G2533 Salvia bowleyana HOM05D001878 ORTHO05D001737 6.5e-06 55.1 77 49.4
Glyma.09G245300 Glycine max HOM05D001878 ORTHO05D001737 8.5e-06 54.7 74 44.6
GSVIVG01003683001 Vitis vinifera HOM05D001878 ORTHO05D001737 8.5e-06 54.7 180 32.2


User provided reference genes

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