Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 0.0e+00 1234.6 631 100.0
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 7.7e-102 375.6 657 42.2
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 1.2e-91 341.7 679 39.6
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 2.1e-91 340.9 726 38.0
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 1.5e-89 334.7 637 39.7
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 5.6e-84 316.2 661 39.0
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 1.7e-80 304.7 684 39.3
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.3e-77 295.0 641 37.3
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 2.1e-75 287.7 634 37.7
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 4.4e-73 280.0 713 34.9
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 3.5e-70 270.4 688 35.6
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.5e-68 265.0 742 34.9
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.1e-67 259.2 708 34.7
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.1e-67 259.2 708 34.7
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 1.4e-66 258.5 627 34.4
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 3.4e-65 253.8 685 34.2
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 6.4e-64 249.6 764 33.0
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.4e-63 248.4 618 36.1
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 3.2e-63 247.3 706 34.6
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 1.2e-62 245.4 634 35.6
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.2e-62 245.4 630 34.1
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 3.5e-62 243.8 678 33.6
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 4.6e-62 243.4 736 33.0
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 3.9e-61 240.4 643 33.4
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.3e-60 236.9 727 32.7
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 2.4e-58 231.1 639 35.2
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 2.4e-58 231.1 713 33.8
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 4.0e-58 230.3 611 34.7
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 4.0e-58 230.3 653 33.7
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 6.8e-58 229.6 691 33.6
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 2.6e-57 227.6 726 32.2
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 2.2e-56 224.6 649 33.4
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 2.4e-55 221.1 664 32.5
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.7e-54 217.6 664 32.4
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.0e-54 216.5 689 31.3
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 1.0e-53 215.7 675 31.7
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 1.3e-53 215.3 576 32.8
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 3.0e-53 214.2 612 32.8
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 5.1e-53 213.4 691 32.0
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 7.3e-52 209.5 654 33.2
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 9.6e-52 209.1 659 33.1
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 1.4e-50 205.3 668 31.3
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.8e-50 204.9 660 32.9
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 2.4e-50 204.5 711 30.7
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 6.4e-48 196.4 688 30.2
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 8.4e-48 196.1 628 32.5
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 3.2e-47 194.1 612 33.0
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 5.4e-47 193.4 679 32.0
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 7.1e-47 193.0 666 31.4
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.0e-45 189.1 514 35.8
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 2.3e-45 188.0 728 30.6
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 3.0e-45 187.6 738 29.7
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 2.5e-44 184.5 680 30.9
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 3.3e-44 184.1 616 31.7
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.9e-42 176.4 208 52.9
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 9.0e-42 176.0 660 31.4
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 4.5e-41 173.7 798 28.8
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 4.5e-41 173.7 649 32.2
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 4.5e-41 173.7 655 32.5
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 7.6e-41 172.9 636 30.5
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 4.9e-40 170.2 666 30.3
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 6.4e-40 169.9 653 29.2
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 2.4e-39 167.9 720 29.9
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 9.3e-39 166.0 673 30.2
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 3.5e-38 164.1 172 55.8
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 4.6e-38 163.7 630 30.5
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 7.9e-38 162.9 651 31.3
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 3.9e-37 160.6 627 29.2
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.1e-36 159.1 634 30.4
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.1e-36 159.1 628 30.1
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 2.5e-36 157.9 280 42.1
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 5.6e-36 156.8 177 57.6
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 5.6e-36 156.8 279 41.2
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 1.4e-34 152.1 199 51.3
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.8e-34 151.8 649 29.7
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 4.0e-34 150.6 645 29.5
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 5.3e-34 150.2 683 29.7
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 6.9e-34 149.8 656 29.9
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 1.5e-33 148.7 632 30.1
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.5e-33 148.7 166 53.0
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 3.4e-33 147.5 666 30.2
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.4e-33 147.5 734 28.7
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.7e-32 145.2 320 37.2
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 6.5e-32 143.3 657 28.6
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 8.4e-32 142.9 631 29.3
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 2.1e-30 138.3 645 29.0
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.1e-30 138.3 676 29.0
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 2.7e-30 137.9 276 39.5
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 2.7e-30 137.9 630 30.8
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 4.6e-30 137.1 155 53.5
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.1e-28 132.5 134 59.0
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 1.5e-28 132.1 616 28.1
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.9e-28 131.7 172 49.4
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.9e-28 131.7 167 47.3
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 5.7e-28 130.2 647 29.8
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 7.4e-28 129.8 141 56.7
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.3e-27 129.0 674 28.5
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.3e-27 129.0 166 48.2
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 3.7e-27 127.5 630 29.4
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 4.8e-27 127.1 224 42.4
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 1.8e-26 125.2 625 28.5
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.8e-26 125.2 164 49.4
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.8e-26 125.2 682 29.0
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 2.4e-26 124.8 623 27.8
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 3.1e-26 124.4 654 26.5
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 4.1e-26 124.0 199 40.7
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.1e-26 124.0 246 37.8
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 6.9e-26 123.2 636 26.9
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.2e-25 122.5 175 44.6
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 2.0e-25 121.7 659 28.2
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 1.7e-24 118.6 618 26.9
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.4e-23 115.5 651 26.0
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.9e-23 115.2 237 39.2
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 9.3e-23 112.8 663 28.5
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 1.2e-22 112.5 684 27.5
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.6e-22 112.1 698 26.4
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 3.5e-22 110.9 593 29.0
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 4.6e-22 110.5 111 56.8
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 7.9e-22 109.8 168 43.5
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.3e-21 109.0 104 58.7
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 1.1e-20 105.9 147 48.3
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.9e-20 105.1 684 27.8
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.9e-20 105.1 687 26.1
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 4.3e-20 104.0 295 33.6
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 1.3e-19 102.4 657 25.9
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 1.3e-19 102.4 147 49.7
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 2.2e-19 101.7 648 25.5
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 2.8e-19 101.3 585 28.2
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 3.1e-18 97.8 537 28.9
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 3.1e-18 97.8 482 26.8
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.0e-17 95.1 92 59.8
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 3.4e-17 94.4 133 48.1
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 1.3e-16 92.4 670 25.8
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 2.9e-16 91.3 65 70.8
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.9e-16 91.3 92 57.6
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 8.5e-16 89.7 92 56.5
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 4.2e-15 87.4 166 39.8
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 1.8e-13 82.0 513 25.7
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 2.0e-12 78.6 353 27.5
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 2.4e-10 71.6 96 45.8
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 3.1e-10 71.2 645 24.0
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.0e-09 68.6 505 26.7
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 2.6e-09 68.2 195 30.8
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 5.9e-09 67.0 540 25.6


User provided reference genes

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