Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 0.0e+00 1703.3 966 100.0
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 0.0e+00 1194.5 973 73.5
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 0.0e+00 1166.8 1031 69.1
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 0.0e+00 1095.9 971 67.8
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 4.3e-293 1011.5 947 63.3
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 3.3e-285 985.3 950 64.9
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 3.6e-276 955.3 945 59.4
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 8.1e-276 954.1 945 61.0
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 1.1e-275 953.7 980 59.1
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 1.5e-274 949.9 945 61.2
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 4.4e-274 948.3 945 61.2
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.7e-273 945.3 978 59.9
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 8.3e-273 944.1 945 58.9
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 7.3e-269 931.0 976 60.0
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 5.2e-267 924.9 976 58.0
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 5.2e-267 924.9 956 60.5
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 7.6e-266 921.0 969 58.9
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 3.7e-265 918.7 953 59.9
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.4e-264 916.8 981 59.0
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 9.2e-264 914.1 966 58.5
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 9.2e-264 914.1 948 59.9
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 1.6e-263 913.3 982 57.9
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 1.6e-263 913.3 969 58.7
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.0e-262 910.6 947 58.6
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 3.9e-262 908.7 981 57.7
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 2.4e-259 899.4 979 58.7
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 5.2e-259 898.3 959 59.0
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 5.8e-258 894.8 982 57.1
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 5.4e-256 888.3 1077 52.5
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 4.6e-255 885.2 969 58.3
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 1.1e-253 880.6 974 56.5
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 2.5e-253 879.4 941 58.3
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 6.2e-252 874.8 955 59.3
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 6.2e-252 874.8 958 56.3
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 8.1e-252 874.4 849 60.2
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 2.4e-251 872.8 987 57.9
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 3.1e-251 872.5 984 58.2
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 2.0e-250 869.8 979 57.7
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 3.4e-250 869.0 1036 55.4
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 3.4e-250 869.0 898 61.4
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 7.6e-250 867.8 976 58.0
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 1.2e-247 860.5 984 56.6
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 1.7e-246 856.7 976 56.9
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 1.6e-244 850.1 991 55.1
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 2.8e-244 849.4 941 56.6
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 3.6e-244 849.0 986 55.3
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 4.8e-244 848.6 955 54.3
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 2.0e-242 843.2 949 56.7
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 4.6e-239 832.0 937 56.4
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 3.3e-237 825.9 975 54.9
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 7.4e-237 824.7 970 52.6
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 9.6e-237 824.3 888 57.2
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 8.1e-236 821.2 973 54.4
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 9.0e-235 817.8 946 54.5
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 1.2e-234 817.4 978 53.6
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 2.0e-234 816.6 982 54.4
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 2.6e-234 816.2 949 54.7
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 5.8e-234 815.1 962 54.4
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 2.2e-233 813.1 992 54.1
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 1.4e-232 810.4 975 53.7
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 4.2e-232 808.9 951 54.3
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.6e-231 807.0 972 53.4
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 2.5e-229 799.7 964 54.5
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 5.7e-229 798.5 934 54.1
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 7.4e-229 798.1 942 53.7
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 4.8e-228 795.4 972 52.4
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 6.3e-228 795.0 949 54.1
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 9.0e-227 791.2 965 51.1
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 7.6e-226 788.1 962 54.5
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 1.3e-225 787.3 975 53.9
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 1.3e-225 787.3 942 55.6
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.7e-225 786.9 973 52.4
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 1.1e-224 784.3 966 54.1
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 4.2e-224 782.3 944 54.9
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.1e-223 780.0 971 52.2
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 1.3e-222 777.3 976 52.9
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 1.3e-222 777.3 943 53.2
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 6.7e-222 775.0 986 52.8
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.1e-221 774.2 968 50.9
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 4.3e-221 772.3 982 54.2
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 1.6e-220 770.4 976 53.1
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 1.6e-220 770.4 976 53.0
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 3.1e-219 766.1 951 53.5
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 4.1e-219 765.8 958 54.0
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.6e-218 763.1 963 53.4
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 3.8e-217 759.2 940 51.4
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 2.1e-215 753.4 882 51.0
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 2.3e-214 750.0 968 51.3
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 1.5e-213 747.3 1000 49.1
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.5e-213 747.3 998 52.1
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 5.2e-206 722.2 985 49.1
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 2.6e-202 709.9 700 62.4
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 5.9e-202 708.8 952 50.0
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 2.7e-186 656.8 970 46.8
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 1.0e-177 628.2 843 50.4
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.1e-171 608.2 986 44.1
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 1.7e-169 600.9 955 43.0
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 6.6e-169 599.0 982 42.4
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 2.9e-164 583.6 525 71.4
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 4.1e-147 526.6 445 60.7
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.3e-136 490.3 664 54.7
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 2.8e-135 487.3 396 64.6
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 1.4e-134 485.0 592 55.4
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 7.6e-133 479.2 623 50.4
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 5.8e-125 453.0 914 40.7
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 1.2e-117 428.7 636 46.1
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 9.7e-104 382.5 502 51.6
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 4.5e-77 293.9 266 60.5
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.2e-72 279.3 340 55.0
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 3.5e-69 267.7 322 54.7
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.0e-64 251.9 417 47.7
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 4.9e-63 247.3 334 50.6
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 8.6e-60 236.5 329 53.8
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 5.6e-59 233.8 260 50.8
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.3e-57 228.4 263 49.4
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.0e-57 228.0 192 61.5
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 1.0e-52 213.0 993 26.6
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 1.9e-51 208.8 245 54.3
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 7.3e-51 206.8 407 38.8
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 8.3e-47 193.4 1159 24.8
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 1.4e-41 176.0 260 47.7
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 2.4e-38 165.2 373 41.8
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 4.0e-33 147.9 100 71.0
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 6.4e-31 140.6 344 43.6
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 1.9e-30 139.0 117 61.5
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 1.6e-29 136.0 142 52.8
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 1.1e-27 129.8 737 26.1
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.0e-25 121.3 138 54.3
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.3e-25 120.9 95 70.5
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 9.9e-24 116.7 146 54.1
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.7e-23 115.9 144 47.2
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.9e-23 115.2 148 46.6
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 3.2e-22 111.7 90 64.4
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 1.6e-21 109.4 90 64.4
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 6.0e-21 107.5 714 23.5
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 1.3e-18 99.8 72 79.2
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 1.1e-17 96.7 202 33.7
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.5e-16 91.3 69 72.5
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.4e-14 85.5 56 78.6
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.4e-14 85.5 118 51.7
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 6.0e-13 80.9 58 69.0
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 3.0e-12 78.6 58 70.7
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 1.9e-11 75.9 164 37.2
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.5e-11 75.5 93 52.7
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 9.0e-09 67.0 119 42.9
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.0e-08 65.9 64 60.9
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.5e-08 64.7 47 72.3
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 7.1e-06 57.4 95 42.1


User provided reference genes

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