Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 9.6e-143 510.4 303 100.0
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 1.1e-40 171.4 337 40.1
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.5e-34 151.0 297 49.2
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 1.9e-34 150.6 321 46.4
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 2.5e-34 150.2 342 46.2
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 4.3e-34 149.4 335 42.4
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 5.3e-32 142.5 352 47.7
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 5.3e-32 142.5 342 44.2
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.2e-31 141.4 352 46.9
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.5e-31 141.0 339 48.1
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 1.5e-31 141.0 283 42.8
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 2.0e-31 140.6 351 43.3
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 3.4e-31 139.8 323 44.6
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 5.8e-31 139.0 337 48.1
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 7.6e-31 138.7 324 47.8
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 1.0e-30 138.3 342 42.1
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 2.2e-30 137.1 346 45.4
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 3.8e-30 136.3 341 46.3
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 4.9e-30 136.0 326 38.7
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.4e-29 134.4 344 36.3
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 2.5e-29 133.7 302 45.0
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 2.5e-29 133.7 317 37.5
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 9.3e-29 131.7 356 45.2
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 1.2e-28 131.3 313 36.7
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 2.1e-28 130.6 338 42.3
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 3.5e-28 129.8 368 40.2
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.5e-28 129.8 317 42.6
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.6e-28 129.4 338 41.4
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 4.6e-28 129.4 338 41.4
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 6.0e-28 129.0 316 46.8
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 7.9e-28 128.6 343 42.9
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.0e-27 128.3 340 41.8
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.8e-27 127.5 300 34.3
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.8e-27 127.5 318 36.8
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 2.3e-27 127.1 313 35.8
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 3.0e-27 126.7 347 36.3
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 3.0e-27 126.7 311 40.8
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 3.0e-27 126.7 311 40.8
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 5.1e-27 125.9 360 42.2
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 6.7e-27 125.6 316 34.8
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 8.7e-27 125.2 302 43.0
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 8.7e-27 125.2 334 43.4
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 1.1e-26 124.8 350 44.3
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-26 124.4 337 40.9
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.9e-26 124.0 315 47.3
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.5e-26 123.6 309 41.4
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.5e-26 123.6 357 46.2
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 2.5e-26 123.6 326 35.6
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 9.7e-26 121.7 353 38.5
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 9.7e-26 121.7 316 42.1
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.2e-25 120.6 299 39.8
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.8e-25 120.2 251 36.3
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 6.3e-25 119.0 314 40.1
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 1.4e-24 117.9 340 41.2
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.1e-24 116.7 317 42.3
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 4.1e-24 116.3 340 45.6
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 5.3e-24 115.9 341 43.7
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 6.9e-24 115.5 329 43.2
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 6.9e-24 115.5 356 45.5
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.0e-23 114.0 291 35.4
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 3.4e-23 113.2 332 41.3
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 3.4e-23 113.2 320 40.9
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 3.4e-23 113.2 350 29.7
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.5e-23 112.8 335 33.4
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 7.6e-23 112.1 360 43.3
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.6e-23 112.1 309 46.0
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.6e-23 112.1 309 46.0
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 7.6e-23 112.1 309 46.0
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.3e-22 111.3 355 32.1
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 2.2e-22 110.5 357 31.1
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.2e-22 110.5 301 41.9
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 3.8e-22 109.8 312 37.2
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 3.8e-22 109.8 312 37.2
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 5.0e-22 109.4 303 36.0
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.4e-21 107.8 294 34.0
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 1.9e-21 107.5 360 39.7
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 1.9e-21 107.5 313 38.3
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 2.5e-21 107.1 324 35.8
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 4.2e-21 106.3 323 39.3
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 4.2e-21 106.3 360 40.3
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 4.2e-21 106.3 316 41.1
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.2e-21 106.3 291 48.8
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 7.2e-21 105.5 231 45.5
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 7.2e-21 105.5 371 37.5
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 1.2e-20 104.8 345 43.5
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 2.7e-20 103.6 345 31.0
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 7.9e-20 102.1 315 41.9
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.0e-19 101.7 348 38.8
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.4e-19 101.3 226 54.4
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.8e-19 100.9 322 33.9
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.1e-19 99.4 335 43.9
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 6.7e-19 99.0 325 32.3
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 6.7e-19 99.0 335 44.2
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 1.5e-18 97.8 304 43.1
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.5e-18 97.8 333 45.0
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 1.5e-18 97.8 319 42.6
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 1.9e-18 97.4 335 43.6
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.9e-18 97.4 335 43.6
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 4.3e-18 96.3 345 38.0
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 4.3e-18 96.3 340 30.0
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 7.4e-18 95.5 322 43.8
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 7.4e-18 95.5 373 36.2
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 1.3e-17 94.7 309 36.9
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 1.3e-17 94.7 159 42.8
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 2.2e-17 94.0 322 42.9
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.2e-17 94.0 342 29.2
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 6.3e-17 92.4 337 36.8
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 6.3e-17 92.4 307 35.8
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 8.2e-17 92.0 321 43.3
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 8.2e-17 92.0 321 43.3
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 8.2e-17 92.0 307 40.1
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.1e-16 91.7 329 34.7
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 1.4e-16 91.3 236 35.6
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 1.4e-16 91.3 319 42.6
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 2.4e-16 90.5 312 39.4
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 3.1e-16 90.1 308 41.6
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 3.1e-16 90.1 334 29.9
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.1e-16 90.1 306 42.8
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 4.1e-16 89.7 313 44.1
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 4.1e-16 89.7 322 42.9
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 5.3e-16 89.4 332 31.3
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.2e-15 88.2 308 41.6
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 1.2e-15 88.2 331 30.2
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 2.6e-15 87.0 315 40.3
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 3.4e-15 86.7 308 41.2
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.7e-14 84.3 310 34.2
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.7e-14 84.3 321 32.1
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 1.7e-14 84.3 328 43.9
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 2.9e-14 83.6 311 41.8
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 6.5e-14 82.4 330 38.8
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 1.1e-13 81.6 305 29.5
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 3.2e-13 80.1 320 40.9
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 7.2e-13 79.0 303 42.2
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 9.4e-13 78.6 296 44.6
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 9.4e-13 78.6 319 31.3
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 1.2e-12 78.2 211 46.0
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.3e-10 70.1 110 45.5
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 9.7e-10 68.6 261 36.4
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 2.8e-09 67.0 259 36.7
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 3.7e-09 66.6 306 39.5
unitig_62.g23697 Utricularia gibba HOM05D004533 ORTHO05D005347 2.4e-08 63.9 292 28.8
Migut.L01171 Erythranthe guttata HOM05D004533 ORTHO05D005347 5.3e-08 62.8 85 49.4
unitig_22.g5564 Utricularia gibba HOM05D004533 ORTHO05D005347 7.0e-08 62.4 279 28.3
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 1.2e-07 61.6 294 28.2
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.3e-06 58.2 329 26.4


User provided reference genes

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