Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 2.4e-60 235.3 120 100.0
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 1.3e-26 123.2 122 57.4
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 4.7e-24 114.8 127 52.8
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 1.4e-20 103.2 114 52.6
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 2.7e-19 99.0 113 51.3
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 4.5e-19 98.2 105 52.4
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 7.7e-19 97.4 101 54.5
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 2.5e-17 92.4 78 56.4
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 9.4e-17 90.5 89 55.1
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.2e-16 90.1 102 48.0
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.2e-16 90.1 88 52.3
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 2.7e-16 89.0 73 57.5
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 2.7e-16 89.0 88 52.3
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 2.7e-16 89.0 114 50.9
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.6e-16 88.6 109 49.5
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 3.6e-16 88.6 96 49.0
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 6.1e-16 87.8 107 45.8
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 8.0e-16 87.4 107 46.7
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.0e-15 87.0 99 48.5
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.4e-15 86.7 88 50.0
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 1.8e-15 86.3 73 56.2
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 3.0e-15 85.5 102 49.0
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 3.0e-15 85.5 72 55.6
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 4.0e-15 85.1 82 53.7
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 4.0e-15 85.1 75 52.0
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 4.0e-15 85.1 91 51.6
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 6.8e-15 84.3 115 47.8
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 6.8e-15 84.3 120 44.2
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 6.8e-15 84.3 97 46.4
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.2e-14 83.6 71 57.7
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 1.2e-14 83.6 125 40.8
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.5e-14 83.2 120 43.3
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 2.0e-14 82.8 106 50.0
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 2.6e-14 82.4 114 46.5
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 4.4e-14 81.6 102 46.1
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 4.4e-14 81.6 82 47.6
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 4.4e-14 81.6 95 51.6
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 5.7e-14 81.3 108 48.1
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 5.7e-14 81.3 114 45.6
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 5.7e-14 81.3 114 45.6
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 7.5e-14 80.9 95 47.4
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 7.5e-14 80.9 131 39.7
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 9.8e-14 80.5 88 51.1
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 9.8e-14 80.5 88 51.1
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 9.8e-14 80.5 107 45.8
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.3e-13 80.1 114 45.6
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.3e-13 80.1 107 45.8
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.3e-13 80.1 105 43.8
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 2.2e-13 79.3 114 46.5
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 2.2e-13 79.3 97 46.4
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 2.2e-13 79.3 97 46.4
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 2.2e-13 79.3 97 46.4
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 2.2e-13 79.3 97 46.4
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 2.2e-13 79.3 96 47.9
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 2.2e-13 79.3 88 48.9
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.8e-13 79.0 80 51.2
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 2.8e-13 79.0 84 47.6
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 3.7e-13 78.6 118 49.2
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 4.8e-13 78.2 130 37.7
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 4.8e-13 78.2 110 42.7
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 4.8e-13 78.2 115 43.5
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.8e-13 78.2 72 54.2
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 4.8e-13 78.2 101 47.5
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 4.8e-13 78.2 113 44.2
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 6.3e-13 77.8 108 46.3
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 6.3e-13 77.8 111 42.3
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 8.3e-13 77.4 118 39.8
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 8.3e-13 77.4 108 46.3
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 8.3e-13 77.4 108 46.3
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 8.3e-13 77.4 77 55.8
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.1e-12 77.0 98 45.9
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 1.1e-12 77.0 64 59.4
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-12 76.6 97 45.4
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.4e-12 76.6 114 40.4
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.8e-12 76.3 117 45.3
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.8e-12 76.3 117 45.3
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.8e-12 76.3 102 46.1
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.4e-12 75.9 72 51.4
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.4e-12 75.9 82 52.4
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 3.1e-12 75.5 100 44.0
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 3.1e-12 75.5 72 56.9
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 3.1e-12 75.5 87 49.4
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 4.1e-12 75.1 107 43.9
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 4.1e-12 75.1 80 47.5
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 4.1e-12 75.1 69 56.5
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 4.1e-12 75.1 108 43.5
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 4.1e-12 75.1 95 44.2
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 4.1e-12 75.1 110 41.8
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 5.4e-12 74.7 124 38.7
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 5.4e-12 74.7 124 38.7
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 5.4e-12 74.7 91 47.3
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 9.1e-12 73.9 96 47.9
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 9.1e-12 73.9 96 47.9
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 1.2e-11 73.6 92 46.7
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.2e-11 73.6 103 44.7
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.6e-11 73.2 64 57.8
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.6e-11 73.2 103 44.7
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 1.6e-11 73.2 104 47.1
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.0e-11 72.8 120 40.8
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 2.0e-11 72.8 104 41.3
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 2.0e-11 72.8 79 49.4
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 3.5e-11 72.0 92 45.7
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 3.5e-11 72.0 107 43.0
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 4.5e-11 71.6 142 35.9
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.5e-11 71.6 99 44.4
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 4.5e-11 71.6 111 44.1
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 4.5e-11 71.6 84 45.2
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 4.5e-11 71.6 82 48.8
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 4.5e-11 71.6 75 50.7
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.9e-11 71.2 72 51.4
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 5.9e-11 71.2 103 44.7
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 7.7e-11 70.9 107 40.2
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 7.7e-11 70.9 69 55.1
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.0e-10 70.5 97 41.2
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 1.0e-10 70.5 100 46.0
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 1.3e-10 70.1 129 37.2
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.3e-10 70.1 104 47.1
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.7e-10 69.7 103 40.8
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.7e-10 69.7 101 39.6
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.7e-10 69.7 99 46.5
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 2.3e-10 69.3 64 54.7
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.9e-10 68.9 80 47.5
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 2.9e-10 68.9 70 47.1
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.9e-10 68.9 74 54.1
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 2.9e-10 68.9 99 40.4
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.8e-10 68.6 83 51.8
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 3.8e-10 68.6 86 43.0
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 6.6e-10 67.8 96 41.7
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 8.6e-10 67.4 116 39.7
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 8.6e-10 67.4 74 51.4
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 8.6e-10 67.4 93 40.9
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.1e-09 67.0 72 44.4
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.1e-09 67.0 86 45.3
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.1e-09 67.0 98 44.9
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.1e-09 67.0 91 40.7
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 1.5e-09 66.6 73 52.1
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.5e-09 66.6 100 40.0
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 1.9e-09 66.2 81 45.7
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 1.9e-09 66.2 107 42.1
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 2.5e-09 65.9 102 37.3
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 3.3e-09 65.5 82 47.6
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 3.3e-09 65.5 73 46.6
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 3.3e-09 65.5 84 46.4
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 4.2e-09 65.1 103 40.8
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 5.5e-09 64.7 82 46.3
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 5.5e-09 64.7 74 51.4
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 7.2e-09 64.3 92 41.3
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 1.2e-08 63.5 87 42.5
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 2.1e-08 62.8 92 40.2
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.8e-08 62.4 75 53.3
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 2.8e-08 62.4 80 47.5
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 3.6e-08 62.0 130 33.8
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 4.7e-08 61.6 65 52.3
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 6.1e-08 61.2 114 38.6
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 6.1e-08 61.2 82 42.7
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 8.0e-08 60.8 79 41.8
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.4e-07 60.1 92 42.4
MD13G1065600 Malus domestica HOM05D003853 ORTHO05D004171 1.4e-07 60.1 71 46.5
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.8e-07 59.7 108 38.9
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.3e-07 59.3 74 41.9
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 2.3e-07 59.3 103 38.8
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.3e-07 59.3 90 44.4
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.3e-07 59.3 84 41.7
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 3.0e-07 58.9 75 44.0
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 5.2e-07 58.2 99 42.4
SalBow8G0382 Salvia bowleyana HOM05D033521 ORTHO05D004171 8.9e-07 57.4 77 49.4
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.2e-06 57.0 90 43.3
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 2.0e-06 56.2 100 39.0
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 3.4e-06 55.5 92 39.1
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 5.7e-06 54.7 73 41.1
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 5.7e-06 54.7 78 41.0
SalBow2G0731 Salvia bowleyana HOM05D033521 ORTHO05D004171 7.5e-06 54.3 120 39.2
SalBow2G2016 Salvia bowleyana HOM05D033521 ORTHO05D004171 7.5e-06 54.3 120 39.2
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 9.8e-06 53.9 98 36.7


User provided reference genes

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