Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold286G47134 Striga asiatica HOM05D003545 ORTHO05D004720 2.7e-103 378.6 186 100.0
FvH4_5g31110 Fragaria vesca HOM05D003545 ORTHO05D004720 1.3e-25 120.6 103 57.3
Eucgr.E00006 Eucalyptus grandis HOM05D003545 ORTHO05D004720 3.8e-25 119.0 103 56.3
BcaB01g03326 Brassica carinata HOM05D003545 ORTHO05D004720 6.6e-25 118.2 103 55.3
AT2G44180 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 8.6e-25 117.9 103 54.4
Carub.0004s2675 Capsella rubella HOM05D003545 ORTHO05D004720 8.6e-25 117.9 103 54.4
CARHR139340 Cardamine hirsuta HOM05D003545 ORTHO05D004720 8.6e-25 117.9 103 54.4
Cpa.g.sc9.232 Carica papaya HOM05D003545 ORTHO05D004720 8.6e-25 117.9 103 54.4
Cc03_g16260 Coffea canephora HOM05D003545 ORTHO05D004720 8.6e-25 117.9 103 54.4
C03p29450 Brassica napus HOM05D003545 ORTHO05D004720 1.1e-24 117.5 103 54.4
Thhalv10001459m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 1.1e-24 117.5 103 53.4
BcaC01g05183 Brassica carinata HOM05D003545 ORTHO05D004720 1.5e-24 117.1 103 54.4
A03p24710 Brassica napus HOM05D003545 ORTHO05D004720 1.5e-24 117.1 103 54.4
BolC3t15293H Brassica oleracea HOM05D003545 ORTHO05D004720 1.5e-24 117.1 103 54.4
BraA03t11677Z Brassica rapa HOM05D003545 ORTHO05D004720 1.5e-24 117.1 103 54.4
Migut.N01930 Erythranthe guttata HOM05D003545 ORTHO05D004720 1.5e-24 117.1 103 57.3
SGA_v2.0_scaffold334G49082 Striga asiatica HOM05D003545 ORTHO05D004720 1.5e-24 117.1 103 57.3
RcHm_v2.0_Chr1g0328111 Rosa chinensis HOM05D003545 ORTHO05D004720 1.9e-24 116.7 103 56.3
VMungo1080G0943 Vigna mungo HOM05D003545 ORTHO05D004720 1.9e-24 116.7 103 57.3
Aa31LG1G25840 Aethionema arabicum HOM05D003545 ORTHO05D004720 2.5e-24 116.3 103 53.4
CiPaw.05G050600 Carya illinoinensis HOM05D003545 ORTHO05D004720 2.5e-24 116.3 103 56.3
COL.COLO4_20004 Corchorus olitorius HOM05D003545 ORTHO05D004720 2.5e-24 116.3 103 56.3
DCAR_005465 Daucus carota HOM05D003545 ORTHO05D004720 2.5e-24 116.3 103 55.3
Dinv14603 Davidia involucrata HOM05D003545 ORTHO05D004720 2.5e-24 116.3 103 56.3
Eucgr.E04344 Eucalyptus grandis HOM05D003545 ORTHO05D004720 2.5e-24 116.3 103 55.3
Eucgr.H00238 Eucalyptus grandis HOM05D003545 ORTHO05D004720 2.5e-24 116.3 103 56.3
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 2.5e-24 116.3 103 56.3
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 2.5e-24 116.3 103 56.3
MD17G1285400 Malus domestica HOM05D003545 ORTHO05D004720 2.5e-24 116.3 103 56.3
RcHm_v2.0_Chr1g0328131 Rosa chinensis HOM05D003545 ORTHO05D004720 2.5e-24 116.3 103 56.3
Thecc.01G176200 Theobroma cacao HOM05D003545 ORTHO05D004720 2.5e-24 116.3 103 56.3
Duzib133G1379 Durio zibethinus HOM05D003545 ORTHO05D004720 3.3e-24 115.9 103 55.3
Prupe.2G330300 Prunus persica HOM05D003545 ORTHO05D004720 3.3e-24 115.9 103 56.3
QL02p099813 Quercus lobata HOM05D003545 ORTHO05D004720 3.3e-24 115.9 102 55.9
Sp4g26260 Schrenkiella parvula HOM05D003545 ORTHO05D004720 3.3e-24 115.9 103 53.4
Hund22664 Selenicereus undatus HOM05D003545 ORTHO05D004720 3.3e-24 115.9 103 55.3
CAN.G911.7 Capsicum annuum HOM05D003545 ORTHO05D004720 4.2e-24 115.5 103 54.4
Nitab4.5_0011686g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 4.2e-24 115.5 103 54.4
Oeu050295.1 Olea europaea HOM05D003545 ORTHO05D004720 4.2e-24 115.5 103 54.4
Potri.017G133200 Populus trichocarpa HOM05D003545 ORTHO05D004720 4.2e-24 115.5 103 55.3
QL02p099802 Quercus lobata HOM05D003545 ORTHO05D004720 4.2e-24 115.5 102 55.9
Sed0004430 Sechium edule HOM05D003545 ORTHO05D004720 4.2e-24 115.5 103 54.4
SMO230G0032 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 4.2e-24 115.5 103 52.4
Atru.chr11.677 Acer truncatum HOM05D003545 ORTHO05D004720 5.5e-24 115.2 103 56.3
arahy.Tifrunner.gnm1.ann1.J1JEGY Arachis hypogaea HOM05D003545 ORTHO05D004720 5.5e-24 115.2 103 55.3
arahy.Tifrunner.gnm1.ann1.UV5XRQ Arachis hypogaea HOM05D003545 ORTHO05D004720 5.5e-24 115.2 103 55.3
Duzib138G0328 Durio zibethinus HOM05D003545 ORTHO05D004720 5.5e-24 115.2 103 55.3
Lj6g0020499 Lotus japonicus HOM05D003545 ORTHO05D004720 5.5e-24 115.2 103 55.3
Medtr4g109100 Medicago truncatula HOM05D003545 ORTHO05D004720 5.5e-24 115.2 103 55.3
Psat6g212640 Pisum sativum HOM05D003545 ORTHO05D004720 5.5e-24 115.2 103 55.3
SMO367G0222 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 5.5e-24 115.2 103 52.4
TPR.G21147 Trifolium pratense HOM05D003545 ORTHO05D004720 5.5e-24 115.2 103 55.3
GSVIVG01027489001 Vitis vinifera HOM05D003545 ORTHO05D004720 5.5e-24 115.2 103 55.3
Lalb_Chr24g0392661 Lupinus albus HOM05D003545 ORTHO05D004720 7.2e-24 114.8 103 55.3
Manes.01G007800 Manihot esculenta HOM05D003545 ORTHO05D004720 7.2e-24 114.8 103 54.4
Medtr1g105940 Medicago truncatula HOM05D003545 ORTHO05D004720 7.2e-24 114.8 103 55.3
Os12g0628500 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 7.2e-24 114.8 103 55.3
Potri.004G084800 Populus trichocarpa HOM05D003545 ORTHO05D004720 7.2e-24 114.8 103 54.4
Sp5g03190 Schrenkiella parvula HOM05D003545 ORTHO05D004720 7.2e-24 114.8 103 55.3
EL10Ac3g06198 Beta vulgaris HOM05D003545 ORTHO05D004720 9.5e-24 114.4 103 54.4
Ciclev10020270m.g Citrus clementina HOM05D003545 ORTHO05D004720 9.5e-24 114.4 103 54.4
Cc03_g16230 Coffea canephora HOM05D003545 ORTHO05D004720 9.5e-24 114.4 103 53.4
Thhalv10005983m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 9.5e-24 114.4 103 54.4
FAN13G2420 Fragaria x ananassa HOM05D003545 ORTHO05D004720 9.5e-24 114.4 103 54.4
Gohir.A11G154800 Gossypium hirsutum HOM05D003545 ORTHO05D004720 9.5e-24 114.4 103 54.4
Gohir.D11G161700 Gossypium hirsutum HOM05D003545 ORTHO05D004720 9.5e-24 114.4 103 54.4
Gorai.007G172000 Gossypium raimondii HOM05D003545 ORTHO05D004720 9.5e-24 114.4 103 54.4
Nn1g09395 Nelumbo nucifera HOM05D003545 ORTHO05D004720 9.5e-24 114.4 103 54.4
AL5G42170 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
AT3G59990 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
BcaC07g40404 Brassica carinata HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
BcaC07g40535 Brassica carinata HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
A04p01940 Brassica napus HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
A09p52330 Brassica napus HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
C08p34990 Brassica napus HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
BolC8t51103H Brassica oleracea HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
BraA04t15918Z Brassica rapa HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
BraA09t40662Z Brassica rapa HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
CARHR170310 Cardamine hirsuta HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
Glyma.19G001700 Glycine max HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
SGA_v2.0_scaffold286G47136 Striga asiatica HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 55.3
TWI75G0601 Tripterygium wilfordii HOM05D003545 ORTHO05D004720 1.2e-23 114.0 103 54.4
BcaB02g07435 Brassica carinata HOM05D003545 ORTHO05D004720 1.6e-23 113.6 103 54.4
CANSAT64G0507 Cannabis sativa HOM05D003545 ORTHO05D004720 1.6e-23 113.6 103 54.4
FvH4_5g31120 Fragaria vesca HOM05D003545 ORTHO05D004720 1.6e-23 113.6 103 55.3
Os08g0542000 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 1.6e-23 113.6 103 55.3
Sc10g0003580 Simmondsia chinensis HOM05D003545 ORTHO05D004720 1.6e-23 113.6 103 53.4
Solyc01g006800.4 Solanum lycopersicum HOM05D003545 ORTHO05D004720 1.6e-23 113.6 103 55.3
Sopen01g002780 Solanum pennellii HOM05D003545 ORTHO05D004720 1.6e-23 113.6 103 55.3
PGSC0003DMG400021374 Solanum tuberosum HOM05D003545 ORTHO05D004720 1.6e-23 113.6 103 54.4
Zm00001eb173260 Zea mays HOM05D003545 ORTHO05D004720 1.6e-23 113.6 103 55.3
Lj1A1040G36 Lonicera japonica HOM05D003545 ORTHO05D004720 2.1e-23 113.2 103 53.4
SMO340G0246 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 2.1e-23 113.2 103 52.4
THA.LOC104804455 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 2.1e-23 113.2 103 52.4
Aqoxy5G02072 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 2.8e-23 112.8 103 53.4
MSTRG.24538 Avicennia marina HOM05D003545 ORTHO05D004720 2.8e-23 112.8 103 53.4
BcaB02g08203 Brassica carinata HOM05D003545 ORTHO05D004720 2.8e-23 112.8 103 54.4
Carub.0005s2672 Capsella rubella HOM05D003545 ORTHO05D004720 2.8e-23 112.8 103 53.4
SMO336G0027 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 2.8e-23 112.8 103 50.5
AL4G43130 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 52.4
MSTRG.22061 Avicennia marina HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 53.4
BcaC08g45018 Brassica carinata HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 53.4
A07p24930 Brassica napus HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 53.4
C06p26500 Brassica napus HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 53.4
BolC6t37813H Brassica oleracea HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 53.4
AUR62023680 Chenopodium quinoa HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 53.4
MELO3C020334.2 Cucumis melo HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 54.4
CsaV3_3G017890 Cucumis sativus L. HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 54.4
PSO782G1687 Papaver somniferum HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 53.4
Pp3c18_2250 Physcomitrium patens HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 52.4
Sabra04G0056000 Salix brachista HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 53.4
TAR636G2827 Trochodendron aralioides HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 54.4
HPP92_003411 Vanilla planifolia HOM05D003545 ORTHO05D004720 3.6e-23 112.5 103 53.4
CSS0015354 Camellia sinensis var. sinensis HOM05D003545 ORTHO05D004720 4.7e-23 112.1 103 54.4
ClCG05G010600 Citrullus lanatus HOM05D003545 ORTHO05D004720 4.7e-23 112.1 103 54.4
Mapoly0009s0058 Marchantia polymorpha HOM05D003545 ORTHO05D004720 4.7e-23 112.1 103 51.5
PGR042G1967 Punica granatum HOM05D003545 ORTHO05D004720 4.7e-23 112.1 103 53.4
unitig_747.g21724 Utricularia gibba HOM05D003545 ORTHO05D004720 4.7e-23 112.1 102 53.9
HanXRQChr12g0379661 Helianthus annuus HOM05D003545 ORTHO05D004720 6.1e-23 111.7 103 51.5
PSO063G3599 Papaver somniferum HOM05D003545 ORTHO05D004720 6.1e-23 111.7 103 52.4
SEGI_07894 Sequoiadendron giganteum HOM05D003545 ORTHO05D004720 8.0e-23 111.3 103 52.4
Mapoly0009s0208 Marchantia polymorpha HOM05D003545 ORTHO05D004720 1.0e-22 110.9 103 51.5
Sed0011009 Sechium edule HOM05D003545 ORTHO05D004720 1.0e-22 110.9 103 51.5
Actinidia29355 Actinidia chinensis HOM05D003545 ORTHO05D004720 1.4e-22 110.5 103 54.4
C04p32790 Brassica napus HOM05D003545 ORTHO05D004720 1.4e-22 110.5 103 53.4
MBI03_g28950_MAGBIO Magnolia biondii HOM05D003545 ORTHO05D004720 1.4e-22 110.5 103 52.4
Peaxi162Scf00184g00109 Petunia axillaris HOM05D003545 ORTHO05D004720 1.8e-22 110.2 117 48.7
THA.LOC104802530 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 2.3e-22 109.8 102 52.0
ECA246G2273 Erigeron canadensis HOM05D003545 ORTHO05D004720 3.0e-22 109.4 103 50.5
Pp3c18_2370 Physcomitrium patens HOM05D003545 ORTHO05D004720 6.8e-22 108.2 103 51.5
BcaC02g10099 Brassica carinata HOM05D003545 ORTHO05D004720 8.9e-22 107.8 103 52.4
BolC4t24842H Brassica oleracea HOM05D003545 ORTHO05D004720 8.9e-22 107.8 103 52.4
PRCOL_00002364 Prasinoderma coloniale HOM05D003545 ORTHO05D004720 1.5e-21 107.1 103 51.5
AagrBONN_evm.TU.Sc2ySwM_362.208 Anthoceros agrestis HOM05D003545 ORTHO05D004720 2.6e-21 106.3 103 49.5
CBR_g52643 Chara braunii HOM05D003545 ORTHO05D004720 3.4e-21 105.9 103 50.5
MCO01G510 Micromonas commoda HOM05D003545 ORTHO05D004720 7.5e-21 104.8 103 50.5
Ca_11016_v3 Cicer arietinum L. HOM05D003545 ORTHO05D004720 9.8e-21 104.4 103 50.5
MELO3C032013.2 Cucumis melo HOM05D003545 ORTHO05D004720 1.3e-20 104.0 98 53.1
Aa31LG10G14210 Aethionema arabicum HOM05D003545 ORTHO05D004720 2.4e-19 99.8 95 51.6
Cre16.g652100 Chlamydomonas reinhardtii HOM05D003545 ORTHO05D004720 5.4e-19 98.6 103 46.6
Aqoxy5G02074 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 7.0e-19 98.2 93 50.5
BcaC08g45078 Brassica carinata HOM05D003545 ORTHO05D004720 1.0e-17 94.4 83 56.6
C06p26870 Brassica napus HOM05D003545 ORTHO05D004720 1.0e-17 94.4 83 56.6
BolC6t37861H Brassica oleracea HOM05D003545 ORTHO05D004720 1.0e-17 94.4 83 56.6
CDE07G0638 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 6.6e-17 91.7 87 49.4
Haze_26740 Corylus avellana HOM05D003545 ORTHO05D004720 2.5e-16 89.7 117 40.2
AL4G43110 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 2.1e-15 86.7 98 44.9
AL1G53080 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 1.8e-14 83.6 67 61.2
CDE04G0368 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 3.2e-11 72.8 80 45.0
vmacro00738 Vaccinium macrocarpon HOM05D003545 ORTHO05D004720 1.6e-10 70.5 100 39.0
Rhsim09G0000800 Rhododendron simsii HOM05D003545 ORTHO05D011737 6.0e-10 68.6 39 76.9
ATR0594G119 Amborella trichopoda HOM05D003545 ORTHO05D004720 1.1e-08 64.3 61 49.2
Nitab4.5_0002417g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 1.1e-08 64.3 49 57.1
Rhsim09G0000700 Rhododendron simsii HOM05D003545 ORTHO05D004720 1.1e-08 64.3 49 57.1
Rhsim09G0038700 Rhododendron simsii HOM05D003545 ORTHO05D004720 1.1e-08 64.3 49 57.1
Lsat_1_v5_gn_5_37781 Lactuca sativa HOM05D003545 ORTHO05D004720 2.5e-08 63.2 49 53.1
AUR62002514 Chenopodium quinoa HOM05D003545 ORTHO05D004720 4.3e-08 62.4 49 55.1
Sabra17G0055000 Salix brachista HOM05D003545 ORTHO05D004720 1.8e-06 57.0 49 51.0


User provided reference genes

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