Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 1.0e-159 566.6 277 100.0
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 2.6e-110 402.5 252 78.6
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 4.4e-110 401.7 241 80.5
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 3.2e-108 395.6 249 76.7
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 3.2e-108 395.6 251 76.1
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 7.8e-107 391.0 221 82.8
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 1.0e-106 390.6 249 75.5
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 2.3e-106 389.4 236 78.4
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 6.6e-106 387.9 247 75.3
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 3.3e-105 385.6 229 79.9
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 1.2e-104 383.6 229 79.0
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 2.8e-104 382.5 246 75.2
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 4.7e-104 381.7 229 78.6
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 1.1e-103 380.6 252 75.8
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 1.1e-103 380.6 229 78.6
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 5.2e-103 378.3 229 79.5
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 5.2e-103 378.3 242 75.6
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 1.2e-102 377.1 231 75.3
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 3.4e-102 375.6 249 73.1
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 5.8e-102 374.8 236 76.7
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 1.3e-101 373.6 267 70.4
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 3.7e-101 372.1 265 69.1
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 3.7e-101 372.1 229 76.4
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 1.1e-100 370.5 215 78.6
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 1.9e-100 369.8 265 69.8
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 1.9e-100 369.8 220 78.2
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 2.4e-100 369.4 220 78.2
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 3.2e-100 369.0 248 73.0
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 4.1e-100 368.6 263 69.6
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 5.4e-100 368.2 224 76.8
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 7.1e-100 367.9 244 72.5
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 9.2e-100 367.5 224 75.9
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 1.2e-99 367.1 259 69.1
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 1.2e-99 367.1 224 76.3
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 3.5e-99 365.5 246 72.0
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 4.6e-99 365.2 242 72.3
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 1.0e-98 364.0 219 77.2
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 1.7e-98 363.2 246 72.8
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 3.9e-98 362.1 215 78.6
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 5.1e-98 361.7 236 71.2
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 8.6e-98 360.9 251 68.1
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 1.5e-97 360.1 215 78.1
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 2.5e-97 359.4 214 78.5
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 3.3e-97 359.0 215 76.7
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 5.6e-97 358.2 243 71.2
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 9.6e-97 357.5 258 66.7
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 1.2e-96 357.1 220 75.5
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 1.6e-96 356.7 228 74.6
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 2.8e-96 355.9 236 71.6
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 2.4e-95 352.8 249 67.9
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 2.4e-95 352.8 250 69.2
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 4.0e-95 352.1 242 70.7
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 4.0e-95 352.1 228 72.4
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 8.9e-95 350.9 242 70.7
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 2.0e-94 349.7 195 82.6
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 4.4e-94 348.6 240 67.9
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 5.8e-94 348.2 245 69.4
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 7.6e-94 347.8 232 70.3
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 9.9e-94 347.4 249 67.5
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 2.2e-93 346.3 218 73.9
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 2.9e-93 345.9 243 67.5
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 3.8e-93 345.5 344 54.9
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 4.9e-93 345.1 215 74.0
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 6.4e-93 344.7 271 65.3
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 8.4e-93 344.4 243 67.9
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 1.1e-92 344.0 249 66.7
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 1.4e-92 343.6 231 71.9
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 1.9e-92 343.2 243 67.1
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 1.9e-92 343.2 243 67.5
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 1.9e-92 343.2 242 67.4
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 2.4e-92 342.8 242 68.2
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 2.4e-92 342.8 241 68.5
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 2.4e-92 342.8 249 65.9
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 3.2e-92 342.4 242 68.2
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 4.2e-92 342.0 242 67.4
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 4.2e-92 342.0 241 69.7
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 4.2e-92 342.0 236 70.3
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 5.4e-92 341.7 240 68.8
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 9.3e-92 340.9 218 71.1
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 1.6e-91 340.1 217 71.9
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 1.6e-91 340.1 218 72.0
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 4.6e-91 338.6 242 68.2
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 4.6e-91 338.6 208 75.5
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 7.8e-91 337.8 233 68.7
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 7.8e-91 337.8 214 72.4
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 7.8e-91 337.8 233 68.7
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 7.8e-91 337.8 231 69.3
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 1.0e-90 337.4 229 69.0
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 1.0e-90 337.4 276 60.1
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.7e-90 336.7 242 66.1
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 2.3e-90 336.3 240 66.7
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 3.9e-90 335.5 234 68.4
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 8.7e-90 334.3 225 69.8
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 1.5e-89 333.6 232 68.5
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 3.3e-89 332.4 230 70.4
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 2.2e-85 319.7 234 67.9
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 5.4e-84 315.1 227 65.2
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 1.6e-80 303.5 200 72.0
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 2.6e-78 296.2 207 69.6
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 4.5e-78 295.4 197 72.1
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 3.2e-76 289.3 196 71.4
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 8.7e-74 281.2 164 78.7
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 2.9e-69 266.2 234 59.0
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 5.5e-68 261.9 217 59.4
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 8.7e-66 254.6 234 56.4
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 6.9e-63 245.0 215 55.3
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 9.0e-55 218.0 139 72.7
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 7.7e-54 214.9 227 50.7
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 2.2e-48 196.8 101 88.1
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 3.8e-45 186.0 208 52.4
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 5.0e-45 185.7 229 45.4
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 3.9e-42 176.0 126 66.7
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 2.8e-40 169.9 210 45.2
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 9.4e-36 154.8 108 68.5
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 8.0e-35 151.8 105 73.3
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 3.3e-33 146.4 95 72.6
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 3.3e-33 146.4 95 72.6
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 1.7e-32 144.1 101 67.3
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 5.3e-31 139.0 213 39.0
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 4.5e-30 136.0 116 62.1
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 2.1e-27 127.1 152 47.4
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 2.1e-27 127.1 152 47.4
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 5.2e-26 122.5 79 75.9
SGA_v2.0_scaffold31G12618 Striga asiatica HOM05D006155 ORTHO05D007529 6.8e-26 122.1 186 43.0
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 4.8e-24 115.9 114 56.1
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 6.3e-24 115.5 83 71.1
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.6e-22 110.9 62 80.6
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 1.5e-20 104.4 82 63.4
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 8.3e-16 88.6 171 32.7
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 4.1e-15 86.3 48 83.3
AUR62035886 Chenopodium quinoa HOM05D006155 ORTHO05D007529 4.5e-14 82.8 52 69.2
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 1.7e-13 80.9 193 31.6
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 3.6e-11 73.2 58 63.8


User provided reference genes

Program Settings