Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold283G46989 Striga asiatica HOM05D000610 ORTHO05D403974 3.4e-118 428.3 212 100.0
SGA_v2.0_scaffold56G20043 Striga asiatica HOM05D000610 ORTHO05D002583 8.8e-18 94.7 51 96.1
SalBow5G0863 Salvia bowleyana HOM05D000610 ORTHO05D002583 3.3e-12 76.3 59 69.5
SalBow5G2891 Salvia bowleyana HOM05D000610 ORTHO05D002583 3.3e-12 76.3 59 69.5
MSTRG.23037 Avicennia marina HOM05D000610 ORTHO05D002583 7.3e-12 75.1 53 73.6
Migut.I00139 Erythranthe guttata HOM05D000610 ORTHO05D002583 9.5e-12 74.7 58 65.5
MSTRG.11393 Avicennia marina HOM05D000610 ORTHO05D002583 1.0e-10 71.2 51 72.5
Nitab4.5_0004785g0020 Nicotiana tabacum HOM05D000610 ORTHO05D002583 8.9e-10 68.2 52 63.5
Nitab4.5_0000269g0090 Nicotiana tabacum HOM05D000610 ORTHO05D002583 1.5e-09 67.4 56 58.9
Nitab4.5_0000785g0100 Nicotiana tabacum HOM05D000610 ORTHO05D002583 1.5e-09 67.4 50 64.0
CAN.G1711.16 Capsicum annuum HOM05D000610 ORTHO05D002583 2.0e-09 67.0 51 60.8
Oeu060783.1 Olea europaea HOM05D000610 ORTHO05D002583 3.4e-09 66.2 59 61.0
CAN.G628.32 Capsicum annuum HOM05D000610 ORTHO05D002583 4.4e-09 65.9 56 53.6
Cc04_g17210 Coffea canephora HOM05D000610 ORTHO05D002583 5.7e-09 65.5 54 59.3
Peaxi162Scf00009g00227 Petunia axillaris HOM05D000610 ORTHO05D002583 5.7e-09 65.5 50 62.0
Nitab4.5_0009425g0010 Nicotiana tabacum HOM05D000610 ORTHO05D002583 7.5e-09 65.1 56 55.4
MD11G1124700 Malus domestica HOM05D000610 ORTHO05D002583 9.8e-09 64.7 54 59.3
Prupe.6G093200 Prunus persica HOM05D000610 ORTHO05D002583 1.7e-08 63.9 50 62.0
Peaxi162Scf00013g00137 Petunia axillaris HOM05D000610 ORTHO05D002583 2.2e-08 63.5 56 53.6
Solyc03g113070.4 Solanum lycopersicum HOM05D000610 ORTHO05D002583 2.2e-08 63.5 51 60.8
Sopen03g032150 Solanum pennellii HOM05D000610 ORTHO05D002583 2.2e-08 63.5 51 60.8
Cc04_g17220 Coffea canephora HOM05D000610 ORTHO05D002583 2.9e-08 63.2 49 61.2
arahy.Tifrunner.gnm1.ann1.89ZP41 Arachis hypogaea HOM05D000610 ORTHO05D002583 4.9e-08 62.4 47 61.7
PGSC0003DMG402018143 Solanum tuberosum HOM05D000610 ORTHO05D002583 4.9e-08 62.4 51 58.8
arahy.Tifrunner.gnm1.ann1.FMR35J Arachis hypogaea HOM05D000610 ORTHO05D002583 6.4e-08 62.0 47 61.7
Hma1.2p1_1617F.1_g293850 Hydrangea macrophylla HOM05D000610 ORTHO05D002583 6.4e-08 62.0 44 70.5
Oeu006481.1 Olea europaea HOM05D000610 ORTHO05D002583 8.3e-08 61.6 50 58.0
Lj5C113T8 Lonicera japonica HOM05D000610 ORTHO05D002583 1.4e-07 60.8 43 72.1
Medtr3g099990 Medicago truncatula HOM05D000610 ORTHO05D002583 1.4e-07 60.8 50 56.0
Peaxi162Scf00013g00139 Petunia axillaris HOM05D000610 ORTHO05D002583 1.4e-07 60.8 50 60.0
Peaxi162Scf01289g00012 Petunia axillaris HOM05D000610 ORTHO05D002583 1.4e-07 60.8 50 60.0
QL10p016023 Quercus lobata HOM05D000610 ORTHO05D002583 1.4e-07 60.8 64 50.0
Solyc06g070960.3 Solanum lycopersicum HOM05D000610 ORTHO05D002583 1.4e-07 60.8 56 48.2
Sopen06g027230 Solanum pennellii HOM05D000610 ORTHO05D002583 1.4e-07 60.8 56 48.2
TWI81G0417 Tripterygium wilfordii HOM05D000610 ORTHO05D002583 1.4e-07 60.8 61 52.5
CiPaw.12G015600 Carya illinoinensis HOM05D000610 ORTHO05D002583 1.8e-07 60.5 57 54.4
QL10p015990 Quercus lobata HOM05D000610 ORTHO05D002583 1.8e-07 60.5 58 53.4
Glyma.04G173000 Glycine max HOM05D000610 ORTHO05D002583 2.4e-07 60.1 50 56.0
CANSAT80G2031 Cannabis sativa HOM05D000610 ORTHO05D002583 3.2e-07 59.7 47 61.7
FvH4_5g17010 Fragaria vesca HOM05D000610 ORTHO05D002583 3.2e-07 59.7 54 51.9
FAN08G1292 Fragaria x ananassa HOM05D000610 ORTHO05D002583 3.2e-07 59.7 47 59.6
Nitab4.5_0009425g0020 Nicotiana tabacum HOM05D000610 ORTHO05D002583 3.2e-07 59.7 47 59.6
RcHm_v2.0_Chr5g0061021 Rosa chinensis HOM05D000610 ORTHO05D002583 3.2e-07 59.7 50 56.0
unitig_62.g23560 Utricularia gibba HOM05D000610 ORTHO05D002583 3.2e-07 59.7 42 69.0
Glyma.06G191300 Glycine max HOM05D000610 ORTHO05D002583 4.1e-07 59.3 43 62.8
PSO017G5214 Papaver somniferum HOM05D000610 ORTHO05D002583 4.1e-07 59.3 42 66.7
PSO478G2242 Papaver somniferum HOM05D000610 ORTHO05D002583 4.1e-07 59.3 42 66.7
PGSC0003DMG400033077 Solanum tuberosum HOM05D000610 ORTHO05D002583 4.1e-07 59.3 49 61.2
TAR629G0188 Trochodendron aralioides HOM05D000610 ORTHO05D002583 4.1e-07 59.3 34 82.4
ATR1120G081 Amborella trichopoda HOM05D000610 ORTHO05D002583 5.4e-07 58.9 50 58.0
Duzib205G1514 Durio zibethinus HOM05D000610 ORTHO05D002583 5.4e-07 58.9 51 56.9
Hma1.2p1_0104F.1_g050120 Hydrangea macrophylla HOM05D000610 ORTHO05D002583 5.4e-07 58.9 51 54.9
Potri.015G063500 Populus trichocarpa HOM05D000610 ORTHO05D002583 5.4e-07 58.9 58 50.0
Sabra15G0089000 Salix brachista HOM05D000610 ORTHO05D002583 5.4e-07 58.9 58 48.3
TAR622G0835 Trochodendron aralioides HOM05D000610 ORTHO05D002583 5.4e-07 58.9 57 56.1
Atru.chr9.2300 Acer truncatum HOM05D000610 ORTHO05D002583 7.0e-07 58.5 48 58.3
CiPaw.11G039900 Carya illinoinensis HOM05D000610 ORTHO05D002583 7.0e-07 58.5 57 52.6
Ca_13682_v3 Cicer arietinum L. HOM05D000610 ORTHO05D002583 7.0e-07 58.5 43 62.8
Dinv38678 Davidia involucrata HOM05D000610 ORTHO05D002583 7.0e-07 58.5 50 56.0
Medtr3g437990 Medicago truncatula HOM05D000610 ORTHO05D002583 7.0e-07 58.5 43 65.1
Aqoxy3G00716 Aquilegia oxysepala HOM05D000610 ORTHO05D002583 9.2e-07 58.2 34 82.4
DCAR_021533 Daucus carota HOM05D000610 ORTHO05D002583 9.2e-07 58.2 55 58.2
Eucgr.K02454 Eucalyptus grandis HOM05D000610 ORTHO05D002583 9.2e-07 58.2 50 56.0
FvH4_3g33610 Fragaria vesca HOM05D000610 ORTHO05D002583 9.2e-07 58.2 49 55.1
FAN11G2326 Fragaria x ananassa HOM05D000610 ORTHO05D002583 9.2e-07 58.2 49 55.1
Gohir.A11G029711 Gossypium hirsutum HOM05D000610 ORTHO05D002583 9.2e-07 58.2 40 67.5
Gohir.D11G033100 Gossypium hirsutum HOM05D000610 ORTHO05D002583 9.2e-07 58.2 40 67.5
Gorai.007G035900 Gossypium raimondii HOM05D000610 ORTHO05D002583 9.2e-07 58.2 40 67.5
Nitab4.5_0000269g0080 Nicotiana tabacum HOM05D000610 ORTHO05D002583 9.2e-07 58.2 47 57.4
PSO170G1857 Papaver somniferum HOM05D000610 ORTHO05D002583 9.2e-07 58.2 42 64.3
TAR629G0472 Trochodendron aralioides HOM05D000610 ORTHO05D002583 9.2e-07 58.2 53 56.6
TAR629G3184 Trochodendron aralioides HOM05D002216 ORTHO05D002583 9.2e-07 58.2 53 56.6
unitig_750.g28500 Utricularia gibba HOM05D000610 ORTHO05D002583 9.2e-07 58.2 41 65.9
AUR62039635 Chenopodium quinoa HOM05D000610 ORTHO05D002583 1.2e-06 57.8 51 58.8
MBI01_g12914_MAGBIO Magnolia biondii HOM05D000610 ORTHO05D002583 1.2e-06 57.8 40 72.5
PGR044G0597 Punica granatum HOM05D000610 ORTHO05D002583 1.2e-06 57.8 53 56.6
Solyc06g070940.4 Solanum lycopersicum HOM05D000610 ORTHO05D002583 1.2e-06 57.8 49 61.2
Sopen06g027210 Solanum pennellii HOM05D000610 ORTHO05D002583 1.2e-06 57.8 49 61.2
GSVIVG01008042001 Vitis vinifera HOM05D000610 ORTHO05D002583 1.2e-06 57.8 43 62.8
Actinidia19053 Actinidia chinensis HOM05D000610 ORTHO05D002583 1.6e-06 57.4 43 62.8
Actinidia34983 Actinidia chinensis HOM05D000610 ORTHO05D002583 1.6e-06 57.4 43 62.8
CANSAT80G0453 Cannabis sativa HOM05D000610 ORTHO05D002583 1.6e-06 57.4 44 63.6
AUR62024982 Chenopodium quinoa HOM05D000610 ORTHO05D002583 1.6e-06 57.4 51 58.8
FAN16G3653 Fragaria x ananassa HOM05D000610 ORTHO05D002583 1.6e-06 57.4 49 53.1
FAN21G4023 Fragaria x ananassa HOM05D000610 ORTHO05D002583 1.6e-06 57.4 49 53.1
Sabra12G0049700 Salix brachista HOM05D000610 ORTHO05D002583 1.6e-06 57.4 34 76.5
Thecc.03G081700 Theobroma cacao HOM05D000610 ORTHO05D002583 1.6e-06 57.4 34 73.5
PSO017G1322 Papaver somniferum HOM05D000610 ORTHO05D002583 2.0e-06 57.0 50 52.0
Atru.chr9.2298_Atru.chr9.2299 Acer truncatum HOM05D000610 ORTHO05D002583 2.7e-06 56.6 51 51.0
Ciclev10018720m.g Citrus clementina HOM05D000610 ORTHO05D002583 2.7e-06 56.6 43 58.1
Sabra15G0088800 Salix brachista HOM05D000610 ORTHO05D002583 2.7e-06 56.6 40 65.0
CSS0025360 Camellia sinensis var. sinensis HOM05D000610 ORTHO05D002583 3.5e-06 56.2 33 72.7
CSS0033185 Camellia sinensis var. sinensis HOM05D000610 ORTHO05D002583 3.5e-06 56.2 43 58.1
Cfa018972 Carpinus fangiana HOM05D000610 ORTHO05D002583 3.5e-06 56.2 42 64.3
CDE05G0896 Ceratophyllum demersum HOM05D000610 ORTHO05D002583 3.5e-06 56.2 40 67.5
Potri.012G069800 Populus trichocarpa HOM05D000610 ORTHO05D002583 3.5e-06 56.2 41 61.0
TWI60G1613 Tripterygium wilfordii HOM05D000610 ORTHO05D002583 3.5e-06 56.2 61 45.9
CSS0007898 Camellia sinensis var. sinensis HOM05D000610 ORTHO05D002583 4.6e-06 55.8 33 75.8
Haze_07357 Corylus avellana HOM05D000610 ORTHO05D002583 4.6e-06 55.8 48 56.2
HanXRQChr02g0043111 Helianthus annuus HOM05D000610 ORTHO05D002583 4.6e-06 55.8 47 66.0
Lj1g0009392 Lotus japonicus HOM05D000610 ORTHO05D002583 4.6e-06 55.8 43 60.5
Lj1g0024986 Lotus japonicus HOM05D000610 ORTHO05D002583 4.6e-06 55.8 43 60.5
Lalb_Chr08g0235871 Lupinus albus HOM05D000610 ORTHO05D002583 4.6e-06 55.8 43 62.8
TPR.G2239 Trifolium pratense HOM05D000610 ORTHO05D002583 4.6e-06 55.8 46 58.7
COL.COLO4_14040 Corchorus olitorius HOM05D000610 ORTHO05D002583 5.9e-06 55.5 34 70.6
Manes.06G095200 Manihot esculenta HOM05D000610 ORTHO05D002583 5.9e-06 55.5 49 59.2
Prupe.5G229500 Prunus persica HOM05D000610 ORTHO05D002583 5.9e-06 55.5 34 70.6
CSS0031516 Camellia sinensis var. sinensis HOM05D000610 ORTHO05D002583 7.8e-06 55.1 43 58.1
CANSAT80G0609 Cannabis sativa HOM05D000610 ORTHO05D002583 7.8e-06 55.1 47 57.4
Cfa018974 Carpinus fangiana HOM05D000610 ORTHO05D002583 7.8e-06 55.1 47 53.2


User provided reference genes

Program Settings