Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold281G46915 Striga asiatica HOM05D004597 ORTHO05D005629 2.8e-120 435.3 216 100.0
SalBow6G0240 Salvia bowleyana HOM05D004597 ORTHO05D005629 2.5e-100 369.0 216 83.8
Migut.J00892 Erythranthe guttata HOM05D004597 ORTHO05D005629 2.7e-99 365.5 216 82.4
MSTRG.19433 Avicennia marina HOM05D004597 ORTHO05D005629 1.8e-95 352.8 214 81.8
MSTRG.26494 Avicennia marina HOM05D004597 ORTHO05D005629 2.2e-93 345.9 217 78.3
Oeu028117.1 Olea europaea HOM05D004597 ORTHO05D005629 1.0e-90 337.0 214 79.0
Eucgr.C00774 Eucalyptus grandis HOM05D004597 ORTHO05D005629 3.7e-88 328.6 214 78.5
Haze_26057 Corylus avellana HOM05D004597 ORTHO05D005629 4.8e-88 328.2 214 76.6
Cfa002950 Carpinus fangiana HOM05D004597 ORTHO05D005629 8.3e-88 327.4 214 76.6
Atru.chr7.1756 Acer truncatum HOM05D004597 ORTHO05D005629 1.1e-87 327.0 216 76.4
Peaxi162Scf00191g00102 Petunia axillaris HOM05D004597 ORTHO05D005629 2.4e-87 325.9 219 73.1
Thecc.09G071400 Theobroma cacao HOM05D004597 ORTHO05D005629 4.1e-87 325.1 217 76.0
CiPaw.03G201900 Carya illinoinensis HOM05D004597 ORTHO05D005629 2.7e-86 322.4 216 75.0
Nitab4.5_0007540g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 4.5e-86 321.6 216 72.2
EL10Ac8g18994 Beta vulgaris HOM05D004597 ORTHO05D005629 7.7e-86 320.9 217 75.1
Cc06_g12610 Coffea canephora HOM05D004597 ORTHO05D005629 7.7e-86 320.9 215 75.8
PGR119G0607 Punica granatum HOM05D004597 ORTHO05D005629 1.0e-85 320.5 215 74.0
vmacro17088 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 1.7e-85 319.7 208 75.5
Nitab4.5_0001699g0010 Nicotiana tabacum HOM05D004597 ORTHO05D005629 2.9e-85 318.9 218 72.0
Manes.16G091900 Manihot esculenta HOM05D004597 ORTHO05D005629 3.8e-85 318.5 218 75.7
COL.COLO4_21219 Corchorus olitorius HOM05D004597 ORTHO05D005629 5.0e-85 318.2 215 75.8
QL11p002680 Quercus lobata HOM05D004597 ORTHO05D005629 5.0e-85 318.2 216 73.6
Ciclev10009453m.g Citrus clementina HOM05D004597 ORTHO05D005629 8.5e-85 317.4 205 77.6
Dinv25516 Davidia involucrata HOM05D004597 ORTHO05D005629 8.5e-85 317.4 218 75.2
GSVIVG01015027001 Vitis vinifera HOM05D004597 ORTHO05D005629 8.5e-85 317.4 207 75.4
Sc18g0002790 Simmondsia chinensis HOM05D004597 ORTHO05D005629 1.1e-84 317.0 215 74.4
Sabra06G0107600 Salix brachista HOM05D004597 ORTHO05D005629 1.9e-84 316.2 216 72.2
Hund08871 Selenicereus undatus HOM05D004597 ORTHO05D005629 7.2e-84 314.3 219 74.4
Potri.006G137500 Populus trichocarpa HOM05D004597 ORTHO05D005629 2.1e-83 312.8 216 73.1
Gohir.D08G267800 Gossypium hirsutum HOM05D004597 ORTHO05D005629 3.6e-83 312.0 210 74.8
Oeu055329.1 Olea europaea HOM05D004597 ORTHO05D005629 3.6e-83 312.0 214 72.9
AUR62028306 Chenopodium quinoa HOM05D004597 ORTHO05D005629 4.7e-83 311.6 216 75.0
ClCG08G002020 Citrullus lanatus HOM05D004597 ORTHO05D005629 6.1e-83 311.2 226 70.4
Ah.09g229020 Amaranthus hybridus HOM05D004597 ORTHO05D005629 1.8e-82 309.7 217 74.2
CsaV3_6G002530 Cucumis sativus L. HOM05D004597 ORTHO05D005629 3.0e-82 308.9 221 72.4
PGSC0003DMG400013551 Solanum tuberosum HOM05D004597 ORTHO05D005629 3.0e-82 308.9 217 71.4
Gohir.A08G246600 Gossypium hirsutum HOM05D004597 ORTHO05D005629 4.0e-82 308.5 210 73.8
Prupe.7G193200 Prunus persica HOM05D004597 ORTHO05D005629 4.0e-82 308.5 206 74.3
TWI32G1285 Tripterygium wilfordii HOM05D004597 ORTHO05D005629 4.0e-82 308.5 217 71.9
Potri.018G063300 Populus trichocarpa HOM05D004597 ORTHO05D005629 5.2e-82 308.1 209 74.2
Sopen07g022070 Solanum pennellii HOM05D004597 ORTHO05D005629 6.8e-82 307.8 217 71.4
RcHm_v2.0_Chr2g0095781 Rosa chinensis HOM05D004597 ORTHO05D005629 8.8e-82 307.4 216 71.8
Solyc07g042440.3 Solanum lycopersicum HOM05D004597 ORTHO05D005629 8.8e-82 307.4 217 71.0
Sed0000155 Sechium edule HOM05D004597 ORTHO05D005629 1.5e-81 306.6 212 73.6
Rhsim08G0029600 Rhododendron simsii HOM05D004597 ORTHO05D005629 2.0e-81 306.2 222 71.6
Sabra18G0056100 Salix brachista HOM05D004597 ORTHO05D005629 2.0e-81 306.2 215 72.1
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 2.6e-81 305.8 217 71.0
Cpa.g.sc82.76 Carica papaya HOM05D004597 ORTHO05D005629 4.4e-81 305.1 216 70.8
CSS0048779 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 7.5e-81 304.3 224 71.4
Sed0006126 Sechium edule HOM05D004597 ORTHO05D005629 7.5e-81 304.3 214 72.9
Medtr4g124790 Medicago truncatula HOM05D004597 ORTHO05D005629 9.8e-81 303.9 208 74.0
FAN26G3440 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.3e-80 303.5 216 70.8
MD15G1222600 Malus domestica HOM05D004597 ORTHO05D005629 1.7e-80 303.1 216 69.0
FvH4_1g09250 Fragaria vesca HOM05D004597 ORTHO05D005629 2.2e-80 302.8 216 70.8
FAN19G2435 Fragaria x ananassa HOM05D004597 ORTHO05D005629 2.2e-80 302.8 216 70.8
FAN26G0325 Fragaria x ananassa HOM05D004597 ORTHO05D005629 2.8e-80 302.4 216 70.4
Aa31LG4G13040 Aethionema arabicum HOM05D004597 ORTHO05D005629 3.7e-80 302.0 203 73.4
Aqoxy7G00987 Aquilegia oxysepala HOM05D004597 ORTHO05D005629 3.7e-80 302.0 205 72.7
CANSAT56G1179 Cannabis sativa HOM05D004597 ORTHO05D005629 8.3e-80 300.8 216 69.0
FAN23G2914 Fragaria x ananassa HOM05D004597 ORTHO05D005629 8.3e-80 300.8 216 70.4
MD02G1099800 Malus domestica HOM05D004597 ORTHO05D005629 8.3e-80 300.8 216 69.4
PSO104G0043 Papaver somniferum HOM05D004597 ORTHO05D005629 1.1e-79 300.4 188 76.1
DCAR_024773 Daucus carota HOM05D004597 ORTHO05D005629 1.4e-79 300.1 215 70.7
Glyma.17G046500 Glycine max HOM05D004597 ORTHO05D005629 1.4e-79 300.1 214 70.6
Lalb_Chr13g0299261 Lupinus albus HOM05D004597 ORTHO05D005629 1.4e-79 300.1 220 71.8
Rhsim08G0029700 Rhododendron simsii HOM05D004597 ORTHO05D005629 1.4e-79 300.1 210 72.4
CAN.G210.7 Capsicum annuum HOM05D004597 ORTHO05D005629 1.8e-79 299.7 211 70.6
Peaxi162Scf00418g00113 Petunia axillaris HOM05D004597 ORTHO05D005629 2.4e-79 299.3 216 69.4
THA.LOC104815073 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 2.4e-79 299.3 201 71.6
Nitab4.5_0001092g0070 Nicotiana tabacum HOM05D004597 ORTHO05D005629 5.4e-79 298.1 219 68.9
Lsat_1_v5_gn_5_139160 Lactuca sativa HOM05D004597 ORTHO05D005629 7.0e-79 297.7 218 70.6
Phvul.003G128266 Phaseolus vulgaris HOM05D004597 ORTHO05D005629 1.6e-78 296.6 214 70.1
Ca_21333_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 2.0e-78 296.2 219 68.5
Ca_30964_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 2.0e-78 296.2 219 68.5
Lj4g0020079 Lotus japonicus HOM05D004597 ORTHO05D005629 2.7e-78 295.8 179 81.6
arahy.Tifrunner.gnm1.ann1.4N6INR Arachis hypogaea HOM05D004597 ORTHO05D005629 3.5e-78 295.4 209 71.8
arahy.Tifrunner.gnm1.ann1.4YLW35 Arachis hypogaea HOM05D004597 ORTHO05D005629 3.5e-78 295.4 209 71.8
PSO421G0191 Papaver somniferum HOM05D004597 ORTHO05D005629 1.0e-77 293.9 211 70.1
PSO421G0482 Papaver somniferum HOM05D004597 ORTHO05D005629 1.0e-77 293.9 209 69.9
Glyma.13G113200 Glycine max HOM05D004597 ORTHO05D005629 2.3e-77 292.7 215 70.2
HanXRQChr12g0354281 Helianthus annuus HOM05D004597 ORTHO05D005629 2.3e-77 292.7 212 71.2
Nitab4.5_0000400g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 2.9e-77 292.4 217 68.7
VMungo1215G0896 Vigna mungo HOM05D004597 ORTHO05D005629 2.9e-77 292.4 205 71.2
ATR0681G150 Amborella trichopoda HOM05D004597 ORTHO05D005629 3.8e-77 292.0 209 70.3
Psat4g018640 Pisum sativum HOM05D004597 ORTHO05D005629 3.8e-77 292.0 218 69.3
Thhalv10021501m.g Eutrema salsugineum HOM05D004597 ORTHO05D005629 6.6e-77 291.2 184 75.5
Duzib150G0058 Durio zibethinus HOM05D004597 ORTHO05D005629 2.5e-76 289.3 207 70.0
CARHR147050 Cardamine hirsuta HOM05D004597 ORTHO05D005629 5.6e-76 288.1 200 71.5
CDE05G1003 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 5.6e-76 288.1 212 68.4
FAN28G1763 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.2e-75 287.0 241 63.1
arahy.Tifrunner.gnm1.ann1.SJ1504 Arachis hypogaea HOM05D004597 ORTHO05D005629 1.6e-75 286.6 218 67.9
AUR62025300 Chenopodium quinoa HOM05D004597 ORTHO05D005629 2.1e-75 286.2 150 88.7
MELO3C025034.2 Cucumis melo HOM05D004597 ORTHO05D005629 2.8e-75 285.8 249 62.2
CDE11G0438 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 3.6e-75 285.4 212 67.0
Lalb_Chr13g0299251 Lupinus albus HOM05D004597 ORTHO05D005629 4.7e-75 285.0 205 71.2
arahy.Tifrunner.gnm1.ann1.2G0Z8B Arachis hypogaea HOM05D004597 ORTHO05D005629 1.4e-74 283.5 220 67.7
Lj4A919T43 Lonicera japonica HOM05D004597 ORTHO05D005629 2.3e-74 282.7 152 84.9
ECA234G4331 Erigeron canadensis HOM05D004597 ORTHO05D005629 5.2e-74 281.6 174 77.0
BcaB02g10783 Brassica carinata HOM05D004597 ORTHO05D005629 5.7e-73 278.1 180 74.4
Carub.0005s0392 Capsella rubella HOM05D004597 ORTHO05D005629 7.5e-73 277.7 184 73.4
Sp5g18690 Schrenkiella parvula HOM05D004597 ORTHO05D005629 7.5e-73 277.7 184 73.9
HPP92_019114 Vanilla planifolia HOM05D004597 ORTHO05D005629 7.5e-73 277.7 150 84.0
DCAR_011918 Daucus carota HOM05D004597 ORTHO05D005629 9.8e-73 277.3 223 66.8
Zm00001eb278510 Zea mays HOM05D004597 ORTHO05D005629 1.3e-72 276.9 199 67.8
CSS0005573 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 2.2e-72 276.2 147 85.7
AL5G14740 Arabidopsis lyrata HOM05D004597 ORTHO05D005629 2.9e-72 275.8 184 72.8
BcaC01g02171 Brassica carinata HOM05D004597 ORTHO05D005629 3.7e-72 275.4 184 73.4
A06p23440 Brassica napus HOM05D004597 ORTHO05D005629 3.7e-72 275.4 180 74.4
C03p67930 Brassica napus HOM05D004597 ORTHO05D005629 3.7e-72 275.4 184 73.4
AT3G26060 Arabidopsis thaliana HOM05D004597 ORTHO05D005629 8.3e-72 274.2 205 68.8
Os06g0196300 Oryza sativa ssp. japonica HOM05D004597 ORTHO05D005629 3.2e-71 272.3 208 65.4
BolC3t19018H Brassica oleracea HOM05D004597 ORTHO05D005629 9.2e-71 270.8 185 73.0
BraA06t25436Z Brassica rapa HOM05D004597 ORTHO05D005629 9.2e-71 270.8 181 74.0
SEGI_12051 Sequoiadendron giganteum HOM05D004597 ORTHO05D005629 3.0e-69 265.8 183 68.3
Hund26094 Selenicereus undatus HOM05D004597 ORTHO05D005629 2.3e-66 256.1 172 72.7
Mapoly0033s0151 Marchantia polymorpha HOM05D004597 ORTHO05D005629 1.1e-63 247.3 193 63.2
SMO146G0055 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 4.1e-63 245.4 150 72.0
Hma1.2p1_0169F.1_g074350 Hydrangea macrophylla HOM05D004597 ORTHO05D005629 3.5e-62 242.3 210 60.5
Pp3c25_1840 Physcomitrium patens HOM05D004597 ORTHO05D005629 7.5e-57 224.6 176 59.7
Pp3c2_15400 Physcomitrium patens HOM05D004597 ORTHO05D005629 4.9e-56 221.9 161 64.6
Lsat_1_v5_gn_7_82541 Lactuca sativa HOM05D004597 ORTHO05D005629 2.5e-52 209.5 117 81.2
Lsat_1_v5_gn_3_58180 Lactuca sativa HOM05D004597 ORTHO05D005629 7.3e-52 208.0 138 71.7
SMO239G0145 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 8.9e-50 201.1 164 53.0
vmacro17087 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 1.3e-48 197.2 105 87.6
Actinidia30251 Actinidia chinensis HOM05D004597 ORTHO05D005629 2.2e-48 196.4 211 56.9
Dinv42426 Davidia involucrata HOM05D004597 ORTHO05D005629 2.1e-46 189.9 146 71.9
QL11p002688 Quercus lobata HOM05D004597 ORTHO05D005629 3.5e-46 189.1 145 70.3
THA.LOC104815153 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 3.0e-45 186.0 209 46.4
Prupe.1G206600 Prunus persica HOM05D004597 ORTHO05D005629 1.5e-44 183.7 201 52.2
Gorai.004G285400 Gossypium raimondii HOM05D004597 ORTHO05D005629 1.4e-42 177.2 138 68.1
Lsat_1_v5_gn_6_72620 Lactuca sativa HOM05D004597 ORTHO05D005629 1.2e-41 174.1 101 79.2
TPR.G12546 Trifolium pratense HOM05D004597 ORTHO05D005629 1.9e-39 166.8 140 65.0
Cre10.g422300 Chlamydomonas reinhardtii HOM05D004597 ORTHO05D005629 1.1e-36 157.5 138 50.0
CBR_g31073 Chara braunii HOM05D004597 ORTHO05D000002 7.3e-36 154.8 99 64.6
PRCOL_00006100 Prasinoderma coloniale HOM05D004597 ORTHO05D005629 2.6e-33 146.4 172 43.6
QL11p002682 Quercus lobata HOM05D004597 ORTHO05D005629 2.2e-32 143.3 72 88.9
Prupe.3G139200 Prunus persica HOM05D004597 ORTHO05D005629 7.9e-30 134.8 74 82.4
TPR.G7463 Trifolium pratense HOM05D004597 ORTHO05D005629 4.0e-26 122.5 103 62.1
Pp3c10_380 Physcomitrium patens HOM05D004597 ORTHO05D005629 5.3e-26 122.1 87 62.1
vmacro17086 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 9.9e-25 117.9 118 55.1
Ca_28838_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 1.7e-24 117.1 149 42.3
TPR.G24405 Trifolium pratense HOM05D004597 ORTHO05D005629 1.1e-20 104.4 73 71.2
unitig_22.g6577 Utricularia gibba HOM05D004597 ORTHO05D005629 2.4e-18 96.7 108 52.8
PRCOL_00007099 Prasinoderma coloniale HOM05D004597 ORTHO05D005629 4.5e-17 92.4 159 32.7
Lsat_1_v5_gn_5_125061 Lactuca sativa HOM05D004597 ORTHO05D005629 5.8e-17 92.0 61 68.9
MELO3C030723.2 Cucumis melo HOM05D004597 ORTHO05D005629 3.8e-16 89.4 84 56.0
Cre06.g257601 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 1.2e-14 84.3 169 30.2
CAN.G574.32 Capsicum annuum HOM05D003127 ORTHO05D003709 2.1e-14 83.6 230 30.9
Haze_27581 Corylus avellana HOM05D003127 ORTHO05D003709 2.7e-14 83.2 136 33.1
MCO02G383 Micromonas commoda HOM05D004597 ORTHO05D005629 2.7e-14 83.2 126 37.3
MCO10G030 Micromonas commoda HOM05D003127 ORTHO05D003709 1.8e-13 80.5 155 32.3
PRCOL_00002734 Prasinoderma coloniale HOM05D003127 ORTHO05D003709 5.1e-13 79.0 155 32.3
Cc06_g06390 Coffea canephora HOM05D003127 ORTHO05D003709 1.1e-12 77.8 224 30.8
Cre02.g114600 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 3.3e-12 76.3 139 30.9
Duzib106G1688 Durio zibethinus HOM05D003127 ORTHO05D003709 5.7e-12 75.5 224 29.5
AagrBONN_evm.TU.Sc2ySwM_344.1889 Anthoceros agrestis HOM05D004597 ORTHO05D005629 7.4e-12 75.1 71 49.3
Prupe.7G193400 Prunus persica HOM05D004597 ORTHO05D005629 3.7e-11 72.8 73 53.4
Oeu055331.1 Olea europaea HOM05D004597 ORTHO05D005629 1.1e-10 71.2 107 42.1
Haze_27547 Corylus avellana HOM05D003127 ORTHO05D003709 1.8e-10 70.5 138 29.0
Cfa022044 Carpinus fangiana HOM05D004597 ORTHO05D005629 5.3e-10 68.9 72 40.3
CBR_g34275 Chara braunii HOM05D003127 ORTHO05D003709 6.9e-10 68.6 157 30.6
THA.LOC104810985 Tarenaya hassleriana HOM05D004597 ORTHO05D406773 9.0e-10 68.2 214 30.8
Cre17.g743897 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 3.8e-08 62.8 136 26.5
COL.COLO4_22132 Corchorus olitorius HOM05D004597 ORTHO05D005629 8.5e-08 61.6 39 74.4
COL.COLO4_36227 Corchorus olitorius HOM05D004597 ORTHO05D005629 4.2e-07 59.3 36 77.8
AUR62029991 Chenopodium quinoa HOM05D005985 ORTHO05D007403 1.2e-06 57.8 160 22.5
Lsat_1_v5_gn_5_40881 Lactuca sativa HOM05D004597 ORTHO05D005629 1.2e-06 57.8 36 72.2
AUR62002570 Chenopodium quinoa HOM05D005985 ORTHO05D007403 1.6e-06 57.4 160 21.9


User provided reference genes

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