Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1553.9 775 100.0
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1229.2 718 85.0
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1219.9 723 83.0
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1204.5 718 82.9
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1191.4 724 82.0
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1179.1 720 80.7
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1166.0 718 80.4
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1161.4 716 79.5
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1160.2 719 79.4
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1156.4 718 79.1
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1156.4 718 79.2
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1154.8 718 79.1
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1150.2 718 79.0
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1147.9 718 78.4
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1146.3 718 77.6
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 769 74.6
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1135.6 718 77.4
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 718 76.3
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1131.7 718 76.9
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1131.3 715 77.1
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1130.9 723 76.8
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1130.2 718 76.9
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1129.0 716 76.3
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1127.9 718 77.0
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1127.1 718 76.5
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1127.1 719 76.9
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1125.5 718 77.4
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1117.8 723 76.5
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1117.8 718 76.0
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1117.4 716 75.4
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1113.6 718 75.6
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1109.4 755 72.1
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1108.2 718 74.5
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1106.7 718 75.5
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1104.7 715 75.9
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1104.0 717 75.7
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1099.0 718 75.1
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1098.6 720 73.8
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1098.2 715 75.5
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1097.8 716 75.6
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1097.4 718 74.8
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1097.0 716 74.9
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1095.1 719 75.0
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1092.4 718 74.4
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1089.3 719 74.3
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1085.1 697 76.0
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1085.1 715 75.0
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1085.1 719 74.1
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1085.1 717 74.9
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1084.7 718 74.0
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1084.3 719 73.7
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1083.9 718 73.7
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1083.6 746 72.9
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1083.2 719 74.7
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1082.0 718 74.0
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1081.2 718 73.8
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1081.2 717 73.8
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1080.1 719 74.3
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1078.9 718 74.0
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1078.9 719 73.6
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1078.5 719 73.4
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1075.5 722 73.1
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 5.3e-312 1074.7 718 73.4
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 5.3e-312 1073.5 726 71.6
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 5.3e-312 1073.5 718 73.5
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 4.8e-311 1070.8 719 71.9
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 8.0e-311 1070.1 718 72.6
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 1.1e-310 1069.7 718 72.6
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 2.3e-310 1068.5 719 73.3
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 3.1e-310 1068.1 719 72.0
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 3.1e-310 1068.1 705 74.5
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 5.2e-310 1067.4 721 72.7
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 2.6e-309 1065.1 718 73.4
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 4.4e-309 1064.3 718 73.5
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 2.9e-308 1061.6 720 71.1
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 5.4e-307 1057.4 716 71.5
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 5.4e-307 1057.4 743 71.9
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 2.1e-306 1055.4 718 74.1
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 1.7e-305 1052.4 721 71.0
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 2.3e-305 1052.0 705 73.9
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 2.3e-305 1052.0 735 69.3
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 1.1e-304 1049.7 721 71.0
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.9e-304 1048.9 715 73.1
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 4.3e-304 1047.7 729 70.9
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 5.6e-304 1047.3 717 73.4
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 7.3e-304 1047.0 715 72.4
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 9.6e-304 1046.6 718 71.0
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 2.1e-303 1045.4 722 69.5
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 5.2e-302 1040.8 765 70.5
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 8.4e-300 1033.5 668 74.0
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 9.3e-299 1030.0 705 73.0
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 2.5e-296 1021.9 732 67.9
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 9.6e-296 1020.0 695 71.9
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.6e-293 1011.9 703 71.7
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 9.9e-293 1010.0 703 71.6
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 1.1e-291 1006.5 619 78.5
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 9.3e-291 1003.4 719 70.2
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 2.3e-289 998.8 722 69.0
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 7.9e-282 973.8 725 66.5
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 3.1e-278 961.8 718 68.0
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 6.3e-271 937.6 708 65.0
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.0e-269 932.6 586 76.5
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 3.6e-258 895.2 643 68.9
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 3.3e-248 862.1 559 75.7
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.6e-242 843.2 732 62.4
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.7e-239 833.2 586 69.3
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 1.3e-236 823.5 724 58.3
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.7e-223 780.0 558 69.7
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.5e-216 756.9 722 54.2
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.9e-215 752.7 726 53.9
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.9e-215 752.7 726 53.9
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.9e-214 750.0 728 53.8
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.3e-211 738.8 727 52.5
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.2e-208 730.7 737 52.9
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 6.0e-197 691.8 477 73.2
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.5e-165 586.3 389 73.8
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 2.4e-161 573.5 394 72.8
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 8.5e-151 538.5 744 41.5
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 3.2e-126 456.8 493 52.7
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 3.8e-111 406.8 785 35.7
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.9e-97 361.3 363 54.5
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.3e-95 355.1 248 70.2
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 5.2e-92 343.2 274 62.8
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 5.8e-91 339.7 836 31.0
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.5e-75 288.5 189 77.2
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 6.6e-71 273.1 248 59.7
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 2.1e-69 268.1 234 59.8
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 2.4e-68 264.6 186 68.3
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 1.5e-67 261.9 185 68.1
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.9e-62 245.0 639 31.1
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.5e-59 235.3 237 54.4
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 7.1e-49 199.9 127 71.7
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 2.6e-43 181.4 157 64.3
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 3.5e-40 171.0 164 59.1
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.2e-34 151.8 234 42.7
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 5.5e-33 147.1 75 90.7
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.2e-32 146.0 80 85.0
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 6.7e-31 140.2 84 79.8
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 2.9e-26 124.8 84 69.0
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 8.0e-16 90.1 88 50.0
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 1.8e-15 89.0 86 53.5
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 9.7e-14 83.2 50 78.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 8.2e-13 80.1 50 72.0
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 3.4e-06 58.2 33 78.8


User provided reference genes

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