Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold27G11718 Striga asiatica HOM05D002032 ORTHO05D402574 1.1e-162 576.6 311 100.0
SGA_v2.0_scaffold159G37686 Striga asiatica HOM05D002032 ORTHO05D400364 3.4e-18 96.7 89 62.9
CSS0013103 Camellia sinensis var. sinensis HOM05D002032 ORTHO05D002247 6.2e-12 75.9 55 69.1
CANSAT01G3153 Cannabis sativa HOM05D002032 ORTHO05D002247 1.8e-11 74.3 53 69.8
Ca_17733_v3 Cicer arietinum L. HOM05D002032 ORTHO05D002247 1.8e-11 74.3 53 69.8
Ciclev10025180m.g Citrus clementina HOM05D002032 ORTHO05D002247 2.4e-11 73.9 53 69.8
Actinidia12299 Actinidia chinensis HOM05D002032 ORTHO05D002247 3.1e-11 73.6 55 65.5
Dinv21915 Davidia involucrata HOM05D002032 ORTHO05D002247 3.1e-11 73.6 55 65.5
Oeu057402.1 Olea europaea HOM05D002032 ORTHO05D002247 3.1e-11 73.6 55 65.5
Potri.007G092100 Populus trichocarpa HOM05D002032 ORTHO05D002247 3.1e-11 73.6 55 65.5
PGR004G1459 Punica granatum HOM05D002032 ORTHO05D002247 3.1e-11 73.6 54 64.8
THA.LOC104799015 Tarenaya hassleriana HOM05D002032 ORTHO05D002247 3.1e-11 73.6 53 69.8
MD01G1028300 Malus domestica HOM05D002032 ORTHO05D002247 4.0e-11 73.2 53 67.9
Prupe.6G184800 Prunus persica HOM05D002032 ORTHO05D002247 4.0e-11 73.2 53 67.9
QL06p049680 Quercus lobata HOM05D002032 ORTHO05D002247 4.0e-11 73.2 53 67.9
Hund00884 Selenicereus undatus HOM05D002032 ORTHO05D002247 4.0e-11 73.2 53 67.9
Aa31LG3G16940 Aethionema arabicum HOM05D002032 ORTHO05D002247 5.3e-11 72.8 55 65.5
AL6G20690 Arabidopsis lyrata HOM05D002032 ORTHO05D002247 5.3e-11 72.8 53 67.9
AT5G10200 Arabidopsis thaliana HOM05D002032 ORTHO05D002247 5.3e-11 72.8 53 67.9
Thhalv10012959m.g Eutrema salsugineum HOM05D002032 ORTHO05D002247 5.3e-11 72.8 53 67.9
Medtr0276s0010 Medicago truncatula HOM05D002032 ORTHO05D002247 5.3e-11 72.8 53 67.9
Sabra07G0075600 Salix brachista HOM05D002032 ORTHO05D002247 5.3e-11 72.8 55 65.5
Atru.chr4.78 Acer truncatum HOM05D002032 ORTHO05D002247 6.9e-11 72.4 53 67.9
Phvul.002G255400 Phaseolus vulgaris HOM05D002032 ORTHO05D002247 6.9e-11 72.4 53 67.9
Psat7g054360 Pisum sativum HOM05D002032 ORTHO05D002247 6.9e-11 72.4 53 67.9
RcHm_v2.0_Chr2g0114531 Rosa chinensis HOM05D002032 ORTHO05D002247 6.9e-11 72.4 52 69.2
TPR.G40782 Trifolium pratense HOM05D002032 ORTHO05D002247 6.9e-11 72.4 53 67.9
VMungo0251G0738 Vigna mungo HOM05D002032 ORTHO05D002247 6.9e-11 72.4 53 67.9
Glyma.05G179000 Glycine max HOM05D002032 ORTHO05D002247 9.0e-11 72.0 53 67.9
Hma1.2p1_0697F.1_g205080 Hydrangea macrophylla HOM05D002032 ORTHO05D002247 9.0e-11 72.0 53 67.9
Hma1.2p1_1975F.1_g309700 Hydrangea macrophylla HOM05D002032 ORTHO05D002247 9.0e-11 72.0 53 67.9
Lj4A888T22 Lonicera japonica HOM05D002032 ORTHO05D002247 9.0e-11 72.0 53 66.0
MD15G1325200 Malus domestica HOM05D002032 ORTHO05D002247 9.0e-11 72.0 53 67.9
Sed0027937 Sechium edule HOM05D002032 ORTHO05D002247 9.0e-11 72.0 51 68.6
Cc07_g15330 Coffea canephora HOM05D002032 ORTHO05D002247 1.2e-10 71.6 41 78.0
FvH4_5g23640 Fragaria vesca HOM05D002032 ORTHO05D002247 1.2e-10 71.6 53 66.0
FAN04G3128 Fragaria x ananassa HOM05D002032 ORTHO05D002247 1.2e-10 71.6 53 66.0
FAN08G2469 Fragaria x ananassa HOM05D002032 ORTHO05D002247 1.2e-10 71.6 53 66.0
FAN13G1398 Fragaria x ananassa HOM05D002032 ORTHO05D002247 1.2e-10 71.6 53 66.0
FAN18G4456 Fragaria x ananassa HOM05D002032 ORTHO05D002247 1.2e-10 71.6 53 66.0
FAN18G4585 Fragaria x ananassa HOM05D002032 ORTHO05D002247 1.2e-10 71.6 53 66.0
Potri.005G076300 Populus trichocarpa HOM05D002032 ORTHO05D002247 1.2e-10 71.6 53 66.0
Rhsim10G0115500 Rhododendron simsii HOM05D002032 ORTHO05D002247 1.2e-10 71.6 55 63.6
Sed0019623 Sechium edule HOM05D002032 ORTHO05D002247 1.2e-10 71.6 53 67.9
SGA_v2.0_scaffold48G18026 Striga asiatica HOM05D002032 ORTHO05D002247 1.2e-10 71.6 42 78.6
Aqoxy6G00808 Aquilegia oxysepala HOM05D002032 ORTHO05D002247 1.5e-10 71.2 52 67.3
BcaB08g37132 Brassica carinata HOM05D002032 ORTHO05D002247 1.5e-10 71.2 53 66.0
BcaC04g19324 Brassica carinata HOM05D002032 ORTHO05D002247 1.5e-10 71.2 53 66.0
A10p27360 Brassica napus HOM05D002032 ORTHO05D002247 1.5e-10 71.2 53 66.0
C09p67220 Brassica napus HOM05D002032 ORTHO05D002247 1.5e-10 71.2 53 66.0
BolC9t59493H Brassica oleracea HOM05D002032 ORTHO05D002247 1.5e-10 71.2 53 66.0
BraA10t44787Z Brassica rapa HOM05D002032 ORTHO05D002247 1.5e-10 71.2 53 66.0
Carub.0006s0866 Capsella rubella HOM05D002032 ORTHO05D002247 1.5e-10 71.2 53 66.0
ClCG01G018820 Citrullus lanatus HOM05D002032 ORTHO05D002247 1.5e-10 71.2 53 66.0
Lj4g0005280 Lotus japonicus HOM05D002032 ORTHO05D002247 1.5e-10 71.2 53 66.0
Lalb_Chr12g0203801 Lupinus albus HOM05D002032 ORTHO05D002247 1.5e-10 71.2 41 78.0
Nn5g30137 Nelumbo nucifera HOM05D002032 ORTHO05D002247 1.5e-10 71.2 42 76.2
SalBow7G0458 Salvia bowleyana HOM05D002032 ORTHO05D002247 1.5e-10 71.2 41 78.0
CiPaw.04G098800 Carya illinoinensis HOM05D002032 ORTHO05D002247 2.0e-10 70.9 53 64.2
CsaV3_6G045470 Cucumis sativus L. HOM05D002032 ORTHO05D002247 2.0e-10 70.9 85 48.2
Dinv16289 Davidia involucrata HOM05D002032 ORTHO05D002247 2.0e-10 70.9 55 63.6
Glyma.08G136500 Glycine max HOM05D002032 ORTHO05D002247 2.0e-10 70.9 53 66.0
Sabra05G0062900 Salix brachista HOM05D002032 ORTHO05D002247 2.0e-10 70.9 39 84.6
TAR628G0855 Trochodendron aralioides HOM05D002032 ORTHO05D002247 2.0e-10 70.9 39 82.1
vmacro09078 Vaccinium macrocarpon HOM05D002032 ORTHO05D002247 2.0e-10 70.9 73 52.1
Ah.05g174140 Amaranthus hybridus HOM05D002032 ORTHO05D002247 2.6e-10 70.5 39 82.1
CiPaw.03G141300 Carya illinoinensis HOM05D002032 ORTHO05D002247 2.6e-10 70.5 39 82.1
AUR62004171 Chenopodium quinoa HOM05D002032 ORTHO05D002247 2.6e-10 70.5 39 82.1
AUR62013670 Chenopodium quinoa HOM05D002032 ORTHO05D002247 2.6e-10 70.5 39 82.1
MELO3C007761.2 Cucumis melo HOM05D002032 ORTHO05D002247 2.6e-10 70.5 85 47.1
DCAR_011679 Daucus carota HOM05D002032 ORTHO05D002247 2.6e-10 70.5 55 63.6
Nitab4.5_0000104g0140 Nicotiana tabacum HOM05D002032 ORTHO05D002247 2.6e-10 70.5 39 82.1
Peaxi162Scf00212g01218 Petunia axillaris HOM05D002032 ORTHO05D002247 2.6e-10 70.5 39 82.1
Solyc04g055110.3 Solanum lycopersicum HOM05D002032 ORTHO05D002247 2.6e-10 70.5 39 82.1
Sopen04g024970 Solanum pennellii HOM05D002032 ORTHO05D002247 2.6e-10 70.5 39 82.1
THA.LOC104819301 Tarenaya hassleriana HOM05D002032 ORTHO05D002247 2.6e-10 70.5 53 67.9
TWI77G0836 Tripterygium wilfordii HOM05D002032 ORTHO05D002247 2.6e-10 70.5 53 64.2
TAR376G0387 Trochodendron aralioides HOM05D002032 ORTHO05D002247 2.6e-10 70.5 52 65.4
HPP92_005998 Vanilla planifolia HOM05D002032 ORTHO05D002247 2.6e-10 70.5 52 69.2
ATR0564G187 Amborella trichopoda HOM05D002032 ORTHO05D002247 3.4e-10 70.1 41 75.6
CSS0008079 Camellia sinensis var. sinensis HOM05D002032 ORTHO05D002247 3.4e-10 70.1 55 63.6
Sp6g33200 Schrenkiella parvula HOM05D002032 ORTHO05D002247 3.4e-10 70.1 53 64.2
Sc12g0007110 Simmondsia chinensis HOM05D002032 ORTHO05D002247 3.4e-10 70.1 53 66.0
unitig_46.g18007 Utricularia gibba HOM05D002032 ORTHO05D002247 3.4e-10 70.1 51 68.6
EL10Ac1g00843 Beta vulgaris HOM05D002032 ORTHO05D002247 4.5e-10 69.7 63 58.7
BcaB05g21459 Brassica carinata HOM05D002032 ORTHO05D002247 4.5e-10 69.7 53 66.0
CARHR203090 Cardamine hirsuta HOM05D002032 ORTHO05D002247 4.5e-10 69.7 54 63.0
HanXRQChr01g0023631 Helianthus annuus HOM05D002032 ORTHO05D002247 4.5e-10 69.7 52 67.3
Lalb_Chr13g0295991 Lupinus albus HOM05D002032 ORTHO05D002247 4.5e-10 69.7 39 82.1
MBI02_g08732_MAGBIO Magnolia biondii HOM05D002032 ORTHO05D002247 4.5e-10 69.7 39 79.5
Eucgr.B01748 Eucalyptus grandis HOM05D002032 ORTHO05D002247 5.8e-10 69.3 53 64.2
Zm00001eb245910 Zea mays HOM05D002032 ORTHO05D002247 5.8e-10 69.3 39 79.5
arahy.Tifrunner.gnm1.ann1.435G7Q Arachis hypogaea HOM05D002032 ORTHO05D002247 7.6e-10 68.9 53 64.2
CAN.G441.4 Capsicum annuum HOM05D002032 ORTHO05D002247 7.6e-10 68.9 39 79.5
Duzib264G0180 Durio zibethinus HOM05D002032 ORTHO05D002247 7.6e-10 68.9 53 64.2
ECA248G3858 Erigeron canadensis HOM05D002032 ORTHO05D002247 7.6e-10 68.9 41 78.0
Manes.13G075400 Manihot esculenta HOM05D002032 ORTHO05D002247 1.0e-09 68.6 53 64.2
arahy.Tifrunner.gnm1.ann1.FTL8EY Arachis hypogaea HOM05D002032 ORTHO05D002247 1.3e-09 68.2 53 64.2
MSTRG.24943 Avicennia marina HOM05D002032 ORTHO05D002247 1.3e-09 68.2 41 78.0
Cfa002675 Carpinus fangiana HOM05D002032 ORTHO05D002247 1.3e-09 68.2 53 66.0
CDE12G0043 Ceratophyllum demersum HOM05D002032 ORTHO05D002247 1.3e-09 68.2 45 66.7
Haze_24944 Corylus avellana HOM05D002032 ORTHO05D002247 1.3e-09 68.2 53 66.0
Os05g0421300 Oryza sativa ssp. japonica HOM05D002032 ORTHO05D002247 1.3e-09 68.2 39 79.5
Zm00001eb183590 Zea mays HOM05D002032 ORTHO05D002247 1.3e-09 68.2 39 76.9
Hma1.2p1_0375F.1_g139020 Hydrangea macrophylla HOM05D002032 ORTHO05D002247 1.7e-09 67.8 53 64.2
TWI53G1473 Tripterygium wilfordii HOM05D002032 ORTHO05D002247 1.7e-09 67.8 53 64.2
Nitab4.5_0007318g0020 Nicotiana tabacum HOM05D002032 ORTHO05D002247 2.2e-09 67.4 39 79.5
PSO541G6351 Papaver somniferum HOM05D002032 ORTHO05D002247 2.2e-09 67.4 39 76.9
PSO781G0053 Papaver somniferum HOM05D002032 ORTHO05D002247 2.2e-09 67.4 39 76.9
MSTRG.962 Avicennia marina HOM05D002032 ORTHO05D002247 2.9e-09 67.0 41 75.6
COL.COLO4_09955 Corchorus olitorius HOM05D002032 ORTHO05D002247 2.9e-09 67.0 53 64.2
Duzib147G1617 Durio zibethinus HOM05D002032 ORTHO05D002247 2.9e-09 67.0 41 75.6
Gohir.A02G143500 Gossypium hirsutum HOM05D002032 ORTHO05D002247 2.9e-09 67.0 53 64.2
Gohir.D03G037000 Gossypium hirsutum HOM05D002032 ORTHO05D002247 2.9e-09 67.0 53 64.2
Gorai.003G038800 Gossypium raimondii HOM05D002032 ORTHO05D002247 2.9e-09 67.0 53 64.2
Nn1g05333 Nelumbo nucifera HOM05D002032 ORTHO05D002247 2.9e-09 67.0 39 74.4
Psat6g143160 Pisum sativum HOM05D002032 ORTHO05D002247 2.9e-09 67.0 39 79.5
Thecc.01G102600 Theobroma cacao HOM05D002032 ORTHO05D002247 2.9e-09 67.0 53 64.2
Manes.12G135800 Manihot esculenta HOM05D002032 ORTHO05D002247 4.9e-09 66.2 39 76.9
CDE04G2388 Ceratophyllum demersum HOM05D002032 ORTHO05D002247 6.5e-09 65.9 39 74.4
SEGI_27093 Sequoiadendron giganteum HOM05D002032 ORTHO05D002247 2.5e-08 63.9 54 57.4
Oeu027631.1 Olea europaea HOM05D002032 ORTHO05D002247 1.0e-06 58.5 37 70.3
Actinidia19888 Actinidia chinensis HOM05D002032 ORTHO05D002247 2.3e-06 57.4 41 70.7
Migut.N02927 Erythranthe guttata HOM05D002032 ORTHO05D002247 2.3e-06 57.4 41 58.5
SalBow6G5363 Salvia bowleyana HOM05D002032 ORTHO05D002247 5.1e-06 56.2 41 58.5
BcaB05g21467 Brassica carinata HOM05D002032 ORTHO05D095316 6.7e-06 55.8 45 64.4


User provided reference genes

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