Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 5.3e-276 953.7 489 100.0
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 3.8e-157 558.9 460 66.7
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 5.2e-146 521.9 460 62.8
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 5.2e-138 495.4 456 59.0
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 6.8e-130 468.4 466 55.6
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 3.5e-118 429.5 452 52.0
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 5.4e-111 405.6 479 48.2
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 8.6e-109 398.3 479 48.9
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 5.2e-106 389.0 476 47.5
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 6.4e-104 382.1 482 47.1
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 5.4e-103 379.0 476 46.6
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 7.1e-103 378.6 488 45.7
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.1e-102 377.1 495 47.1
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 3.5e-102 376.3 487 45.6
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 4.6e-102 375.9 485 46.6
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.0e-101 374.8 488 45.7
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 2.3e-101 373.6 468 48.3
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 3.3e-100 369.8 479 45.7
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 2.8e-99 366.7 467 46.0
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 4.7e-99 365.9 467 46.0
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 6.2e-99 365.5 458 47.8
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 8.9e-98 361.7 476 45.8
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 8.9e-98 361.7 468 46.2
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 2.0e-97 360.5 468 46.8
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 2.0e-97 360.5 473 45.7
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 2.0e-97 360.5 504 43.1
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 4.4e-97 359.4 497 45.1
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 7.6e-97 358.6 461 45.8
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 9.9e-97 358.2 476 46.0
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 2.9e-96 356.7 437 47.8
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 3.8e-96 356.3 471 45.9
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 4.9e-96 355.9 526 42.6
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 2.4e-95 353.6 471 45.9
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 7.1e-95 352.1 484 45.2
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 3.5e-94 349.7 489 46.0
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 7.8e-94 348.6 487 45.8
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 3.9e-93 346.3 334 56.6
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 8.7e-93 345.1 485 44.5
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.1e-92 344.7 479 46.8
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.9e-92 344.0 402 48.0
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.9e-92 344.0 427 48.5
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.5e-92 343.6 465 45.2
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.3e-92 343.2 460 46.1
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 9.6e-92 341.7 527 41.2
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.1e-91 340.5 477 43.0
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 2.8e-91 340.1 493 45.4
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 2.8e-91 340.1 467 42.4
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 4.8e-91 339.3 505 43.4
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 4.8e-91 339.3 487 45.4
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 3.1e-90 336.7 397 47.6
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 5.3e-90 335.9 456 44.7
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 5.3e-90 335.9 477 43.0
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 6.9e-90 335.5 466 44.4
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 6.9e-90 335.5 474 42.2
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 6.9e-90 335.5 467 44.1
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.2e-89 334.7 467 43.7
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.5e-89 334.3 467 45.6
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.0e-89 334.0 503 43.3
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.6e-89 333.6 484 42.6
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 4.5e-89 332.8 461 43.8
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 4.5e-89 332.8 457 44.9
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 4.5e-89 332.8 470 43.0
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 4.5e-89 332.8 398 46.7
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 4.5e-89 332.8 398 46.7
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 9.9e-89 331.6 448 45.1
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 9.9e-89 331.6 448 45.1
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.3e-88 331.3 468 44.2
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 2.2e-88 330.5 457 46.2
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 6.4e-88 328.9 396 49.2
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 1.4e-87 327.8 448 44.0
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.4e-87 327.0 466 43.3
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 2.4e-87 327.0 454 43.8
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.4e-87 327.0 451 45.7
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 7.1e-87 325.5 449 43.9
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 7.1e-87 325.5 505 41.0
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 9.3e-87 325.1 453 43.5
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.2e-86 324.7 462 45.0
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.3e-85 320.5 519 41.6
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.3e-85 320.5 519 41.6
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 2.3e-85 320.5 508 42.7
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 3.9e-85 319.7 352 48.9
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 6.6e-85 318.9 452 44.7
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 1.1e-84 318.2 452 44.9
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-84 318.2 452 44.9
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.1e-84 318.2 507 40.2
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.9e-84 317.4 428 42.3
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.3e-84 316.2 451 44.8
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 5.6e-84 315.8 462 42.9
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 4.8e-83 312.8 509 40.3
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 6.2e-83 312.4 523 39.4
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 6.2e-83 312.4 458 40.6
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.8e-82 310.8 476 41.2
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 3.1e-82 310.1 476 39.3
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 9.0e-82 308.5 450 44.7
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.5e-81 307.8 431 42.2
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.4e-79 301.2 439 44.2
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 4.6e-78 296.2 486 41.2
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.9e-77 293.1 434 44.9
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 4.3e-76 289.7 438 43.4
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.6e-75 287.7 449 41.2
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 2.6e-73 280.4 432 42.4
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 7.6e-73 278.9 460 40.2
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.9e-72 276.9 445 41.8
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 3.2e-71 273.5 434 41.5
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 6.0e-70 269.2 444 39.9
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.8e-69 267.7 438 42.5
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 3.9e-69 266.5 451 41.0
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 3.1e-66 256.9 558 33.2
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 4.6e-62 243.0 345 43.8
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.3e-61 241.5 420 38.3
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 5.7e-60 236.1 331 42.6
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 9.1e-58 228.8 380 39.7
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 5.9e-57 226.1 335 42.1
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 6.5e-56 222.6 440 37.0
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.1e-55 221.9 305 42.6
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 3.2e-55 220.3 362 39.2
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 5.5e-55 219.5 440 38.6
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.2e-54 218.4 389 36.2
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 5.1e-53 213.0 402 40.0
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.3e-51 208.4 459 35.3
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 5.5e-47 193.0 413 36.1
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.1e-42 178.7 721 24.8
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 8.5e-32 142.5 312 36.2
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 3.2e-31 140.6 132 57.6
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 4.2e-31 140.2 364 30.2
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 9.4e-31 139.0 354 29.9
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 8.0e-30 136.0 208 40.9
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 6.8e-29 132.9 206 39.8
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.0e-28 131.3 638 22.3
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.4e-26 124.4 213 38.5
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.5e-25 120.2 150 47.3
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 1.7e-24 118.2 138 42.8
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.2e-23 114.0 218 35.8
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 7.2e-23 112.8 164 42.1
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 4.0e-21 107.1 526 23.6
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 3.7e-19 100.5 576 22.2
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.9e-19 100.1 152 42.8
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 4.1e-18 97.1 410 23.9
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 5.4e-18 96.7 207 35.3
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 1.1e-15 89.0 57 68.4
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.9e-15 88.2 71 56.3
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 3.3e-15 87.4 203 32.5
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 7.3e-15 86.3 72 54.2
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.6e-14 85.1 207 33.3
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.1e-14 84.7 194 32.5
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 2.8e-14 84.3 84 47.6
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.4e-13 82.0 181 32.6
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 8.9e-13 79.3 165 33.9
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 9.8e-12 75.9 133 32.3
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 6.4e-11 73.2 167 34.7
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 1.7e-08 65.1 106 39.6
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 5.0e-08 63.5 120 38.3
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 4.3e-07 60.5 204 30.9
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 4.3e-07 60.5 107 34.6
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 5.6e-07 60.1 185 30.3
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 5.6e-07 60.1 111 36.0
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 7.3e-07 59.7 185 30.3
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 7.3e-07 59.7 185 30.3
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.1e-06 58.2 70 41.4
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 2.1e-06 58.2 105 37.1
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 3.6e-06 57.4 37 62.2
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 4.7e-06 57.0 109 38.5
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 4.7e-06 57.0 105 35.2
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 4.7e-06 57.0 208 29.3
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 4.7e-06 57.0 139 29.5
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 4.7e-06 57.0 111 32.4
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 4.7e-06 57.0 111 32.4
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 6.2e-06 56.6 198 29.8
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 8.0e-06 56.2 91 36.3
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 8.0e-06 56.2 108 38.9
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 8.0e-06 56.2 109 38.5


User provided reference genes

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