Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 2.0e-147 525.8 268 100.0
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.4e-84 316.2 267 62.9
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 4.2e-81 305.4 255 66.3
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 3.5e-80 302.4 263 61.6
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 7.9e-80 301.2 269 59.5
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 3.0e-79 299.3 276 56.2
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 3.9e-79 298.9 258 62.4
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 5.1e-79 298.5 262 60.7
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 5.1e-79 298.5 270 59.3
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 6.7e-79 298.1 264 58.7
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 2.8e-77 292.7 251 62.2
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 4.8e-77 292.0 268 58.2
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 4.8e-77 292.0 257 58.8
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 6.2e-77 291.6 245 64.1
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.1e-76 290.8 257 57.2
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 2.4e-76 289.7 267 58.1
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 3.1e-76 289.3 257 59.5
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 1.5e-75 287.0 266 57.9
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 4.5e-75 285.4 244 61.5
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 1.3e-74 283.9 279 55.6
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 3.8e-74 282.3 255 58.4
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 4.9e-74 282.0 268 56.3
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 1.4e-73 280.4 263 56.3
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 4.2e-73 278.9 246 60.6
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 5.5e-73 278.5 238 61.8
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 7.1e-73 278.1 266 56.8
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 9.3e-73 277.7 290 53.1
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 9.3e-73 277.7 264 55.3
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 1.6e-72 276.9 262 56.5
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.6e-72 276.9 271 54.6
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 2.3e-71 273.1 262 56.1
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 6.7e-71 271.6 263 55.9
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 6.7e-71 271.6 263 57.4
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 1.1e-70 270.8 253 55.3
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 1.1e-70 270.8 267 55.4
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 1.1e-70 270.8 255 57.3
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.5e-70 270.4 265 55.1
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.9e-70 270.0 266 55.3
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 1.9e-70 270.0 266 55.3
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 1.9e-70 270.0 268 53.0
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 2.5e-70 269.6 266 54.5
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 3.3e-70 269.2 264 54.5
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 3.3e-70 269.2 250 57.6
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 3.3e-70 269.2 270 53.3
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 4.3e-70 268.9 266 54.9
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 4.3e-70 268.9 284 53.9
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 5.6e-70 268.5 279 52.0
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 7.4e-70 268.1 261 56.3
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 7.4e-70 268.1 266 54.1
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 7.4e-70 268.1 252 53.6
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 9.6e-70 267.7 235 61.7
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.6e-69 266.9 270 53.7
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 4.8e-69 265.4 246 57.3
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 4.8e-69 265.4 276 53.6
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 4.8e-69 265.4 263 54.8
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 6.2e-69 265.0 266 53.0
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 8.2e-69 264.6 263 56.7
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 1.8e-68 263.5 245 57.6
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 2.4e-68 263.1 251 56.6
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 2.4e-68 263.1 265 54.3
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 4.0e-68 262.3 285 51.2
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 1.5e-67 260.4 251 55.4
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 1.7e-66 256.9 272 54.0
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 2.9e-66 256.1 268 52.6
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.9e-66 256.1 274 51.8
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 2.9e-66 256.1 253 54.5
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 8.4e-66 254.6 260 55.4
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.1e-65 254.2 282 50.4
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 1.1e-65 254.2 269 52.4
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 1.2e-64 250.8 280 50.7
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 3.0e-63 246.1 294 48.6
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 5.1e-63 245.4 259 54.8
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 7.4e-62 241.5 247 53.4
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 1.4e-60 237.3 272 50.4
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 5.9e-59 231.9 210 60.0
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 2.2e-58 229.9 260 48.5
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 5.5e-57 225.3 254 49.6
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 2.1e-56 223.4 262 49.2
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 5.1e-55 218.8 257 51.0
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 6.7e-55 218.4 395 37.0
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 6.7e-55 218.4 253 46.6
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 8.8e-55 218.0 256 51.6
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 8.8e-55 218.0 247 50.2
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 4.3e-54 215.7 206 57.3
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 3.1e-52 209.5 206 53.9
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 6.9e-52 208.4 237 48.5
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 9.1e-52 208.0 212 50.9
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.0e-50 204.5 207 55.6
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 4.2e-49 199.1 216 53.2
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 3.0e-47 193.0 209 52.2
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 5.7e-46 188.7 254 45.7
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 7.0e-44 181.8 155 60.6
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.0e-42 177.9 266 42.9
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.8e-39 167.2 163 54.6
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 5.2e-39 165.6 191 49.7
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 5.2e-39 165.6 272 41.9
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.7e-38 162.2 286 39.2
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.7e-38 162.2 286 39.2
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 6.3e-37 158.7 118 61.9
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 8.2e-37 158.3 167 51.5
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 2.6e-35 153.3 126 63.5
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.7e-34 150.6 122 67.2
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 2.2e-34 150.2 159 52.2
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 9.4e-33 144.8 209 40.7
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 9.4e-33 144.8 171 48.0
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 1.4e-31 141.0 138 54.3
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 5.2e-31 139.0 132 56.1
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 6.8e-31 138.7 122 61.5
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 1.3e-29 134.4 126 55.6
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 4.8e-29 132.5 107 62.6
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 5.3e-28 129.0 121 53.7
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 7.7e-27 125.2 132 53.0
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 1.3e-26 124.4 132 53.0
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 1.1e-25 121.3 132 52.3
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 1.1e-25 121.3 132 52.3
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 1.9e-25 120.6 93 63.4
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 4.2e-25 119.4 94 68.1
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 8.0e-24 115.2 297 31.0
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 8.0e-24 115.2 253 32.0
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 3.0e-23 113.2 147 47.6
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 4.0e-23 112.8 115 52.2
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 4.4e-22 109.4 99 54.5
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 5.4e-20 102.4 327 29.1
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 5.4e-20 102.4 109 51.4
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 7.0e-20 102.1 98 51.0
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.1e-16 90.5 73 60.3
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 3.7e-13 79.7 60 65.0
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.9e-13 79.3 60 60.0
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 4.1e-12 76.3 65 56.9
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 2.7e-11 73.6 64 54.7
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 1.0e-07 61.6 61 54.1
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 8.9e-07 58.5 41 63.4


User provided reference genes

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