Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold27G11669 Striga asiatica HOM05D021822 ORTHO05D399526 5.4e-189 664.1 316 100.0
SGA_v2.0_scaffold349G49602 Striga asiatica HOM05D021822 ORTHO05D002031 9.1e-27 125.2 150 52.0
SGA_v2.0_scaffold349G49601 Striga asiatica HOM05D021822 ORTHO05D398937 2.0e-26 124.0 63 90.5
SGA_v2.0_scaffold279G46814 Striga asiatica HOM05D021822 ORTHO05D009908 7.7e-26 122.1 68 86.8
SGA_v2.0_scaffold52G19150 Striga asiatica HOM05D021822 ORTHO05D002031 5.7e-13 79.3 41 92.7
SGA_v2.0_scaffold7G03652 Striga asiatica HOM05D002163 ORTHO05D002386 2.2e-12 77.4 42 81.0
MSTRG.16076 Avicennia marina HOM05D002163 ORTHO05D002386 1.6e-10 71.2 43 62.8
SGA_v2.0_scaffold179G39545 Striga asiatica HOM05D021822 ORTHO05D404075 5.9e-10 69.3 37 91.9
MSTRG.7106 Avicennia marina HOM05D002163 ORTHO05D002386 1.7e-09 67.8 36 72.2
Migut.M01480 Erythranthe guttata HOM05D002163 ORTHO05D002386 2.9e-09 67.0 36 69.4
SalBow8G3928 Salvia bowleyana HOM05D002163 ORTHO05D002386 2.9e-09 67.0 37 70.3
Nitab4.5_0000147g0120 Nicotiana tabacum HOM05D002163 ORTHO05D002386 6.6e-09 65.9 58 51.7
CDE05G3653 Ceratophyllum demersum HOM05D002163 ORTHO05D002386 1.9e-08 64.3 36 63.9
Actinidia26624 Actinidia chinensis HOM05D002163 ORTHO05D002386 3.3e-08 63.5 36 63.9
CSS0003902 Camellia sinensis var. sinensis HOM05D002163 ORTHO05D002386 7.2e-08 62.4 36 61.1
MELO3C007987.2 Cucumis melo HOM05D002163 ORTHO05D002386 7.2e-08 62.4 36 61.1
CsaV3_6G048000 Cucumis sativus L. HOM05D002163 ORTHO05D002386 7.2e-08 62.4 36 61.1
DCAR_005489 Daucus carota HOM05D002163 ORTHO05D002386 7.2e-08 62.4 37 64.9
Dinv14850 Davidia involucrata HOM05D002163 ORTHO05D002386 7.2e-08 62.4 36 63.9
Thhalv10027147m.g Eutrema salsugineum HOM05D002163 ORTHO05D002386 7.2e-08 62.4 36 63.9
Peaxi162Scf00563g00526 Petunia axillaris HOM05D002163 ORTHO05D002386 7.2e-08 62.4 48 54.2
Sp7g17040 Schrenkiella parvula HOM05D002163 ORTHO05D002386 7.2e-08 62.4 36 63.9
SEGI_01934 Sequoiadendron giganteum HOM05D002163 ORTHO05D002386 7.2e-08 62.4 36 61.1
Solyc04g015300.3 Solanum lycopersicum HOM05D002163 ORTHO05D002386 7.2e-08 62.4 35 65.7
Sopen04g007380 Solanum pennellii HOM05D002163 ORTHO05D002386 7.2e-08 62.4 35 65.7
PGSC0003DMG400027260 Solanum tuberosum HOM05D002163 ORTHO05D002386 7.2e-08 62.4 35 65.7
Atru.chr1.2207 Acer truncatum HOM05D002163 ORTHO05D002386 9.5e-08 62.0 50 52.0
AL7G37580 Arabidopsis lyrata HOM05D002163 ORTHO05D002386 9.5e-08 62.0 36 61.1
Nitab4.5_0001663g0220 Nicotiana tabacum HOM05D002163 ORTHO05D002386 9.5e-08 62.0 49 51.0
Rhsim02G0087600 Rhododendron simsii HOM05D002163 ORTHO05D002386 9.5e-08 62.0 36 61.1
CARHR223720 Cardamine hirsuta HOM05D002163 ORTHO05D002386 1.2e-07 61.6 36 61.1
Oeu016930.1 Olea europaea HOM05D002163 ORTHO05D002386 1.2e-07 61.6 36 63.9
Sc24g0000030 Simmondsia chinensis HOM05D002163 ORTHO05D002386 1.2e-07 61.6 36 63.9
Sc24g0000500 Simmondsia chinensis HOM05D002163 ORTHO05D002386 1.2e-07 61.6 36 63.9
CAN.G1456.14 Capsicum annuum HOM05D002163 ORTHO05D002386 1.6e-07 61.2 34 67.6
Cfa021531 Carpinus fangiana HOM05D002163 ORTHO05D002386 1.6e-07 61.2 36 63.9
Sed0007994 Sechium edule HOM05D002163 ORTHO05D002386 1.6e-07 61.2 36 58.3
arahy.Tifrunner.gnm1.ann1.V0GQ55 Arachis hypogaea HOM05D002163 ORTHO05D002386 2.1e-07 60.8 43 53.5
Hma1.2p1_0394F.1_g143410 Hydrangea macrophylla HOM05D002163 ORTHO05D002386 2.1e-07 60.8 36 61.1
PGR042G0848 Punica granatum HOM05D002163 ORTHO05D002386 2.1e-07 60.8 36 58.3
ATR0751G113 Amborella trichopoda HOM05D002163 ORTHO05D002386 2.8e-07 60.5 36 61.1
COL.COLO4_21623 Corchorus olitorius HOM05D002163 ORTHO05D002386 2.8e-07 60.5 43 55.8
MBI14_g12728_MAGBIO Magnolia biondii HOM05D002163 ORTHO05D002386 2.8e-07 60.5 36 66.7
Carub.0007s2426 Capsella rubella HOM05D002163 ORTHO05D002386 3.6e-07 60.1 36 61.1
RcHm_v2.0_Chr5g0000061 Rosa chinensis HOM05D002163 ORTHO05D002386 3.6e-07 60.1 36 61.1
TAR624G1228 Trochodendron aralioides HOM05D002163 ORTHO05D002386 3.6e-07 60.1 34 64.7
vmacro15707 Vaccinium macrocarpon HOM05D002163 ORTHO05D002386 3.6e-07 60.1 36 58.3
AagrBONN_evm.TU.Sc2ySwM_344.916 Anthoceros agrestis HOM05D002163 ORTHO05D002386 4.7e-07 59.7 36 58.3
AT4G17150 Arabidopsis thaliana HOM05D002163 ORTHO05D002386 4.7e-07 59.7 36 58.3
BcaB04g18400 Brassica carinata HOM05D002163 ORTHO05D002386 4.7e-07 59.7 37 64.9
A08p12910 Brassica napus HOM05D002163 ORTHO05D002386 4.7e-07 59.7 35 71.4
Haze_07063 Corylus avellana HOM05D002163 ORTHO05D002386 4.7e-07 59.7 34 67.6
Medtr4g117570 Medicago truncatula HOM05D002163 ORTHO05D002386 4.7e-07 59.7 36 61.1
BcaB06g26503 Brassica carinata HOM05D002163 ORTHO05D002386 6.1e-07 59.3 41 53.7
Cpa.g.sc27.184 Carica papaya HOM05D002163 ORTHO05D002386 6.1e-07 59.3 36 58.3
Ciclev10015057m.g Citrus clementina HOM05D002163 ORTHO05D002386 6.1e-07 59.3 36 55.6
PSO541G0268 Papaver somniferum HOM05D002163 ORTHO05D002386 6.1e-07 59.3 36 61.1
Pp3c4_3670 Physcomitrium patens HOM05D002163 ORTHO05D002386 6.1e-07 59.3 36 61.1
Potri.006G000700 Populus trichocarpa HOM05D002163 ORTHO05D002386 6.1e-07 59.3 36 58.3
TPR.G5952 Trifolium pratense HOM05D002163 ORTHO05D002386 6.1e-07 59.3 36 58.3
TWI63G0140 Tripterygium wilfordii HOM05D002163 ORTHO05D002386 6.1e-07 59.3 36 58.3
A04p07830 Brassica napus HOM05D002163 ORTHO05D002386 8.0e-07 58.9 36 61.1
BraA04t16471Z Brassica rapa HOM05D002163 ORTHO05D002386 8.0e-07 58.9 36 61.1
Haze_00985 Corylus avellana HOM05D002163 ORTHO05D002386 8.0e-07 58.9 43 51.2
Manes.08G014800 Manihot esculenta HOM05D002163 ORTHO05D002386 8.0e-07 58.9 36 58.3
Atru.chr4.2668 Acer truncatum HOM05D002163 ORTHO05D002386 1.0e-06 58.5 36 58.3
CiPaw.09G113100 Carya illinoinensis HOM05D002163 ORTHO05D002386 1.0e-06 58.5 36 58.3
QL05p066200 Quercus lobata HOM05D002163 ORTHO05D002386 1.0e-06 58.5 34 64.7
THA.LOC104806750 Tarenaya hassleriana HOM05D002163 ORTHO05D002386 1.0e-06 58.5 36 58.3
A01p31530 Brassica napus HOM05D002163 ORTHO05D002386 1.4e-06 58.2 36 55.6
C01p40230 Brassica napus HOM05D002163 ORTHO05D002386 1.4e-06 58.2 36 55.6
BolC1t03984H Brassica oleracea HOM05D002163 ORTHO05D002386 1.4e-06 58.2 36 55.6
BraA01t03283Z Brassica rapa HOM05D002163 ORTHO05D002386 1.4e-06 58.2 36 55.6
AUR62015194 Chenopodium quinoa HOM05D002163 ORTHO05D002386 1.4e-06 58.2 34 64.7
Ca_21577_v3 Cicer arietinum L. HOM05D002163 ORTHO05D002386 1.4e-06 58.2 36 58.3
HanXRQChr12g0359451 Helianthus annuus HOM05D002163 ORTHO05D002386 1.4e-06 58.2 36 58.3
Lalb_Chr18g0057571 Lupinus albus HOM05D002163 ORTHO05D002386 1.4e-06 58.2 36 58.3
Psat4g030600 Pisum sativum HOM05D002163 ORTHO05D002386 1.4e-06 58.2 36 58.3
TPR.G20137 Trifolium pratense HOM05D002163 ORTHO05D002386 1.4e-06 58.2 36 58.3
TPR.G28917 Trifolium pratense HOM05D002163 ORTHO05D002386 1.4e-06 58.2 36 55.6
ClCG01G021010 Citrullus lanatus HOM05D002163 ORTHO05D002386 1.8e-06 57.8 34 61.8
FvH4_4g14200 Fragaria vesca HOM05D002163 ORTHO05D002386 1.8e-06 57.8 36 58.3
Gohir.D05G180500 Gossypium hirsutum HOM05D002163 ORTHO05D002386 1.8e-06 57.8 56 46.4
Gorai.009G185500 Gossypium raimondii HOM05D002163 ORTHO05D002386 1.8e-06 57.8 56 46.4
Medtr2g021260 Medicago truncatula HOM05D002163 ORTHO05D002386 1.8e-06 57.8 36 55.6
Nn1g07647 Nelumbo nucifera HOM05D002163 ORTHO05D002386 1.8e-06 57.8 36 58.3
RcHm_v2.0_Chr4g0419001 Rosa chinensis HOM05D002163 ORTHO05D002386 1.8e-06 57.8 36 58.3
arahy.Tifrunner.gnm1.ann1.6H6MU0 Arachis hypogaea HOM05D002163 ORTHO05D002386 2.3e-06 57.4 36 55.6
BcaB02g08621 Brassica carinata HOM05D002163 ORTHO05D002386 2.3e-06 57.4 36 58.3
BcaC02g09336 Brassica carinata HOM05D002163 ORTHO05D002386 2.3e-06 57.4 36 58.3
C04p41460 Brassica napus HOM05D002163 ORTHO05D002386 2.3e-06 57.4 36 58.3
BolC4t25728H Brassica oleracea HOM05D002163 ORTHO05D002386 2.3e-06 57.4 36 58.3
Carub.0007s2802 Capsella rubella HOM05D002163 ORTHO05D002386 2.3e-06 57.4 36 55.6
Glyma.09G017500 Glycine max HOM05D002163 ORTHO05D002386 2.3e-06 57.4 34 64.7
Lalb_Chr15g0088461 Lupinus albus HOM05D002163 ORTHO05D002386 2.3e-06 57.4 36 58.3
PSO675G8732 Papaver somniferum HOM05D002163 ORTHO05D002386 2.3e-06 57.4 30 70.0
Peaxi162Scf00095g00087 Petunia axillaris HOM05D002163 ORTHO05D002386 2.3e-06 57.4 36 61.1
Sabra06G0000900 Salix brachista HOM05D002163 ORTHO05D002386 2.3e-06 57.4 34 61.8
Sp7g12300 Schrenkiella parvula HOM05D002163 ORTHO05D002386 2.3e-06 57.4 36 55.6
Thecc.04G219300 Theobroma cacao HOM05D002163 ORTHO05D002386 2.3e-06 57.4 36 58.3
HPP92_027044 Vanilla planifolia HOM05D002163 ORTHO05D002386 2.3e-06 57.4 36 63.9
Ca_00609_v3 Cicer arietinum L. HOM05D002163 ORTHO05D002386 3.0e-06 57.0 36 55.6
Ciclev10004606m.g Citrus clementina HOM05D002163 ORTHO05D002386 3.0e-06 57.0 36 55.6
Glyma.13G210700 Glycine max HOM05D002163 ORTHO05D002386 3.0e-06 57.0 36 55.6
MD13G1180700 Malus domestica HOM05D002163 ORTHO05D002386 3.0e-06 57.0 36 58.3
Mapoly0016s0015 Marchantia polymorpha HOM05D002163 ORTHO05D002386 3.0e-06 57.0 36 52.8
Psat1g184880 Pisum sativum HOM05D002163 ORTHO05D002386 3.0e-06 57.0 36 55.6
Potri.016G001000 Populus trichocarpa HOM05D002163 ORTHO05D002386 3.0e-06 57.0 36 58.3
CiPaw.02G090500 Carya illinoinensis HOM05D002163 ORTHO05D002386 4.0e-06 56.6 36 55.6
Ca_24686_v3 Cicer arietinum L. HOM05D002163 ORTHO05D002386 4.0e-06 56.6 34 64.7
Gohir.A05G177100 Gossypium hirsutum HOM05D002163 ORTHO05D002386 4.0e-06 56.6 56 46.4
Gohir.D10G150800 Gossypium hirsutum HOM05D002163 ORTHO05D002386 4.0e-06 56.6 36 58.3
HanXRQChr10g0310201 Helianthus annuus HOM05D002163 ORTHO05D002386 4.0e-06 56.6 36 58.3
HanXRQChr15g0470191 Helianthus annuus HOM05D002163 ORTHO05D002386 4.0e-06 56.6 36 55.6
Medtr4g134350 Medicago truncatula HOM05D002163 ORTHO05D002386 4.0e-06 56.6 36 55.6
Prupe.1G148800 Prunus persica HOM05D002163 ORTHO05D002386 4.0e-06 56.6 36 55.6
Zm00001eb276160 Zea mays HOM05D002163 ORTHO05D002386 4.0e-06 56.6 36 55.6
arahy.Tifrunner.gnm1.ann1.7I5575 Arachis hypogaea HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 52.8
BcaC06g35538 Brassica carinata HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 52.8
A07p08850 Brassica napus HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 52.8
C03p76890 Brassica napus HOM05D002163 ORTHO05D002386 5.2e-06 56.2 37 56.8
C07p13710 Brassica napus HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 52.8
BraA07t28676Z Brassica rapa HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 52.8
FvH4_3g00060 Fragaria vesca HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 55.6
FAN07G2289 Fragaria x ananassa HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 55.6
FAN12G2278 Fragaria x ananassa HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 55.6
Glyma.15G102100 Glycine max HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 55.6
Gohir.A10G115700 Gossypium hirsutum HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 58.3
Gorai.011G168000 Gossypium raimondii HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 58.3
Lj4g0028246 Lotus japonicus HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 55.6
MD10G1342300 Malus domestica HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 58.3
PGR004G1581 Punica granatum HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 55.6
THA.LOC104808656 Tarenaya hassleriana HOM05D002163 ORTHO05D002386 5.2e-06 56.2 36 52.8
Zm00001eb236070 Zea mays HOM05D002163 ORTHO05D002386 5.2e-06 56.2 56 42.9
Aa31LG9G3080 Aethionema arabicum HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 52.8
Aqoxy4G02257 Aquilegia oxysepala HOM05D002163 ORTHO05D002386 6.8e-06 55.8 38 52.6
AL3G38200 Arabidopsis lyrata HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 52.8
AT3G23540 Arabidopsis thaliana HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 52.8
Carub.0003s2374 Capsella rubella HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 52.8
ECA234G3826 Erigeron canadensis HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 55.6
Thhalv10024836m.g Eutrema salsugineum HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 52.8
Glyma.07G255200 Glycine max HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 52.8
Glyma.07G270200 Glycine max HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 55.6
Glyma.17G003700 Glycine max HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 55.6
Glyma.17G019100 Glycine max HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 52.8
Medtr2g027870 Medicago truncatula HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 58.3
Phvul.003G089300 Phaseolus vulgaris HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 55.6
Phvul.003G096200 Phaseolus vulgaris HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 52.8
Pp3c12_23220 Physcomitrium patens HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 58.3
Prupe.4G000500 Prunus persica HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 55.6
Sp3g21200 Schrenkiella parvula HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 52.8
SGA_v2.0_scaffold4G01925 Striga asiatica HOM05D002434 ORTHO05D002743 6.8e-06 55.8 33 84.8
SGA_v2.0_scaffold52G19151 Striga asiatica HOM05D002434 ORTHO05D002743 6.8e-06 55.8 42 69.0
VMungo1215G0371 Vigna mungo HOM05D002163 ORTHO05D002386 6.8e-06 55.8 36 55.6
Cfa015556 Carpinus fangiana HOM05D002163 ORTHO05D002386 8.9e-06 55.5 36 52.8
COL.COLO4_31968 Corchorus olitorius HOM05D002163 ORTHO05D002386 8.9e-06 55.5 34 61.8
FAN25G3252 Fragaria x ananassa HOM05D002163 ORTHO05D002386 8.9e-06 55.5 36 55.6
Lj4g0014611 Lotus japonicus HOM05D002163 ORTHO05D002386 8.9e-06 55.5 36 52.8
Lj6g0027793 Lotus japonicus HOM05D002163 ORTHO05D002386 8.9e-06 55.5 36 55.6
Lalb_Chr07g0177421 Lupinus albus HOM05D002163 ORTHO05D002386 8.9e-06 55.5 36 52.8
Os06g0609700 Oryza sativa ssp. japonica HOM05D002163 ORTHO05D002386 8.9e-06 55.5 36 58.3
Psat0s2550g0040 Pisum sativum HOM05D002163 ORTHO05D002386 8.9e-06 55.5 36 52.8
Sabra10G0011900 Salix brachista HOM05D002163 ORTHO05D002386 8.9e-06 55.5 36 55.6
VMungo0540G1913 Vigna mungo HOM05D002163 ORTHO05D002386 8.9e-06 55.5 36 52.8
VMungo1215G0347 Vigna mungo HOM05D002163 ORTHO05D002386 8.9e-06 55.5 36 52.8


User provided reference genes

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