Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold27G11580 Striga asiatica HOM05D003085 ORTHO05D405926 2.8e-76 288.5 144 100.0
SGA_v2.0_scaffold27G11576 Striga asiatica HOM05D003085 ORTHO05D003597 2.7e-18 95.9 273 33.7
Peaxi162Scf00150g00919 Petunia axillaris HOM05D003085 ORTHO05D003597 3.9e-17 92.0 223 32.7
Phvul.011G087900 Phaseolus vulgaris HOM05D003085 ORTHO05D003597 1.1e-14 84.0 248 32.7
Ca_19330_v3 Cicer arietinum L. HOM05D003085 ORTHO05D003597 2.4e-14 82.8 250 31.6
arahy.Tifrunner.gnm1.ann1.DV6GD6 Arachis hypogaea HOM05D003085 ORTHO05D003597 5.3e-14 81.6 253 30.4
Oeu026986.1 Olea europaea HOM05D003085 ORTHO05D003597 5.3e-14 81.6 244 29.5
Oeu023731.3 Olea europaea HOM05D003085 ORTHO05D003597 1.2e-13 80.5 244 29.5
Ciclev10029856m.g Citrus clementina HOM05D003085 ORTHO05D003597 1.5e-13 80.1 245 30.2
Migut.D02304 Erythranthe guttata HOM05D003085 ORTHO05D003597 1.5e-13 80.1 183 33.9
MSTRG.21080 Avicennia marina HOM05D003085 ORTHO05D003597 2.6e-13 79.3 244 29.9
Prupe.6G114600 Prunus persica HOM05D003085 ORTHO05D003597 2.6e-13 79.3 252 28.6
SGA_v2.0_scaffold277G46708 Striga asiatica HOM05D003085 ORTHO05D003597 2.6e-13 79.3 170 36.5
TPR.G35041 Trifolium pratense HOM05D003085 ORTHO05D003597 3.4e-13 79.0 255 29.8
Lj3g0012291 Lotus japonicus HOM05D003085 ORTHO05D003597 4.5e-13 78.6 249 30.1
THA.LOC104801513 Tarenaya hassleriana HOM05D003085 ORTHO05D003597 4.5e-13 78.6 180 33.9
CSS0049169 Camellia sinensis var. sinensis HOM05D003085 ORTHO05D003597 5.8e-13 78.2 247 29.6
Glyma.12G083100 Glycine max HOM05D003085 ORTHO05D003597 5.8e-13 78.2 248 29.8
Cc01_g10120 Coffea canephora HOM05D003085 ORTHO05D003597 7.6e-13 77.8 252 29.4
ECA233G4000 Erigeron canadensis HOM05D003085 ORTHO05D003597 7.6e-13 77.8 229 30.1
Glyma.11G191200 Glycine max HOM05D003085 ORTHO05D003597 9.9e-13 77.4 247 30.0
Phvul.005G130000 Phaseolus vulgaris HOM05D003085 ORTHO05D003597 9.9e-13 77.4 247 30.4
Sopen11g026280 Solanum pennellii HOM05D003085 ORTHO05D003597 1.3e-12 77.0 244 29.1
MSTRG.17751 Avicennia marina HOM05D003085 ORTHO05D003597 1.7e-12 76.6 245 29.8
VMungo1127G1035 Vigna mungo HOM05D003085 ORTHO05D003597 1.7e-12 76.6 248 31.0
Aqoxy2G01566 Aquilegia oxysepala HOM05D003085 ORTHO05D003597 2.2e-12 76.3 249 28.9
Lalb_Chr03g0027811 Lupinus albus HOM05D003085 ORTHO05D003597 2.2e-12 76.3 254 28.7
PGSC0003DMG400000422 Solanum tuberosum HOM05D003085 ORTHO05D003597 2.2e-12 76.3 244 28.7
AUR62041306 Chenopodium quinoa HOM05D003085 ORTHO05D003597 2.9e-12 75.9 199 31.7
TAR633G1925 Trochodendron aralioides HOM05D003085 ORTHO05D003597 4.9e-12 75.1 245 28.2
CAN.G644.48 Capsicum annuum HOM05D003085 ORTHO05D003597 8.4e-12 74.3 244 28.7
Cpa.g.sc47.13 Carica papaya HOM05D003085 ORTHO05D003597 8.4e-12 74.3 234 28.6
Dinv12569 Davidia involucrata HOM05D003085 ORTHO05D003597 8.4e-12 74.3 244 28.3
Lalb_Chr01g0004651 Lupinus albus HOM05D003085 ORTHO05D003597 8.4e-12 74.3 255 28.6
TAR623G0567 Trochodendron aralioides HOM05D003085 ORTHO05D003597 8.4e-12 74.3 141 37.6
TAR623G1594 Trochodendron aralioides HOM05D003085 ORTHO05D003597 1.1e-11 73.9 245 29.0
ECA233G1328 Erigeron canadensis HOM05D003085 ORTHO05D003597 1.4e-11 73.6 243 28.8
Lsat_1_v5_gn_6_42080 Lactuca sativa HOM05D003085 ORTHO05D003597 1.4e-11 73.6 228 29.4
Lsat_1_v5_gn_6_41981 Lactuca sativa HOM05D003085 ORTHO05D003597 1.9e-11 73.2 218 30.7
MD03G1129600 Malus domestica HOM05D003085 ORTHO05D003597 1.9e-11 73.2 248 28.6
Medtr4g056520 Medicago truncatula HOM05D003085 ORTHO05D003597 1.9e-11 73.2 254 29.5
Potri.009G003100 Populus trichocarpa HOM05D003085 ORTHO05D003597 1.9e-11 73.2 252 27.8
TWI75G0400 Tripterygium wilfordii HOM05D003085 ORTHO05D003597 1.9e-11 73.2 239 28.0
Solyc11g066520.3 Solanum lycopersicum HOM05D003085 ORTHO05D003597 2.4e-11 72.8 244 28.7
unitig_899.g15365 Utricularia gibba HOM05D003085 ORTHO05D003597 2.4e-11 72.8 250 28.8
AUR62024037 Chenopodium quinoa HOM05D003085 ORTHO05D003597 3.2e-11 72.4 227 28.6
CANSAT54G0440 Cannabis sativa HOM05D003085 ORTHO05D003597 4.2e-11 72.0 248 28.6
arahy.Tifrunner.gnm1.ann1.996MJR Arachis hypogaea HOM05D003085 ORTHO05D003597 5.4e-11 71.6 55 63.6
QL01p014661 Quercus lobata HOM05D003085 ORTHO05D003597 5.4e-11 71.6 250 26.8
Lalb_Chr09g0333061 Lupinus albus HOM05D003085 ORTHO05D003597 7.1e-11 71.2 252 27.0
SalBow6G1261 Salvia bowleyana HOM05D003085 ORTHO05D003597 7.1e-11 71.2 55 63.6
QL07p041402 Quercus lobata HOM05D003085 ORTHO05D003597 1.2e-10 70.5 251 27.1
VMungo1080G1865 Vigna mungo HOM05D003085 ORTHO05D003597 1.2e-10 70.5 253 28.1
Glyma.13G321200 Glycine max HOM05D003085 ORTHO05D003597 1.6e-10 70.1 252 28.2
RcHm_v2.0_Chr5g0056351 Rosa chinensis HOM05D003085 ORTHO05D003597 1.6e-10 70.1 256 28.9
FvH4_3g30390 Fragaria vesca HOM05D003085 ORTHO05D003597 2.1e-10 69.7 251 28.3
MD11G1151400 Malus domestica HOM05D003085 ORTHO05D003597 2.1e-10 69.7 244 28.7
GSVIVG01031445001 Vitis vinifera HOM05D003085 ORTHO05D003597 2.1e-10 69.7 244 27.0
FAN21G3016 Fragaria x ananassa HOM05D003085 ORTHO05D003597 2.7e-10 69.3 251 28.3
Aqoxy2G01567 Aquilegia oxysepala HOM05D003085 ORTHO05D003597 3.5e-10 68.9 244 27.5
FAN11G3272 Fragaria x ananassa HOM05D003085 ORTHO05D003597 3.5e-10 68.9 251 28.3
PSO339G0306 Papaver somniferum HOM05D003085 ORTHO05D003597 3.5e-10 68.9 249 28.1
TPR.G32370 Trifolium pratense HOM05D003085 ORTHO05D003597 3.5e-10 68.9 234 28.6
Cc01_g03770 Coffea canephora HOM05D003085 ORTHO05D003597 4.6e-10 68.6 54 63.0
QL01p014677 Quercus lobata HOM05D003085 ORTHO05D003597 4.6e-10 68.6 244 27.0
GSVIVG01033712001 Vitis vinifera HOM05D000165 ORTHO05D003597 4.6e-10 68.6 55 63.6
Actinidia24156 Actinidia chinensis HOM05D003085 ORTHO05D003597 6.0e-10 68.2 55 61.8
RcHm_v2.0_Chr5g0056341 Rosa chinensis HOM05D003085 ORTHO05D003597 6.0e-10 68.2 246 28.5
Thecc.09G295900 Theobroma cacao HOM05D003085 ORTHO05D003597 6.0e-10 68.2 55 60.0
Aa31LG5G8150 Aethionema arabicum HOM05D003085 ORTHO05D003597 7.9e-10 67.8 244 27.0
CANSAT64G0562 Cannabis sativa HOM05D003085 ORTHO05D003597 7.9e-10 67.8 252 26.6
Haze_23516 Corylus avellana HOM05D003085 ORTHO05D003597 7.9e-10 67.8 191 31.4
Oeu035521.1 Olea europaea HOM05D003085 ORTHO05D003597 1.0e-09 67.4 55 60.0
ClCG01G012840 Citrullus lanatus HOM05D003085 ORTHO05D003597 1.3e-09 67.0 238 27.3
Nitab4.5_0000173g0290 Nicotiana tabacum HOM05D003085 ORTHO05D003597 1.3e-09 67.0 184 34.2
PSO801G0429 Papaver somniferum HOM05D003085 ORTHO05D003597 1.8e-09 66.6 249 27.3
TPR.G32367 Trifolium pratense HOM05D003085 ORTHO05D003597 1.8e-09 66.6 250 28.8
TWI79G1544 Tripterygium wilfordii HOM05D003085 ORTHO05D003597 1.8e-09 66.6 55 56.4
Eucgr.B03913 Eucalyptus grandis HOM05D003085 ORTHO05D003597 2.3e-09 66.2 243 27.2
Medtr2g084530 Medicago truncatula HOM05D003085 ORTHO05D003597 2.3e-09 66.2 252 27.8
Nn2g13899 Nelumbo nucifera HOM05D003085 ORTHO05D003597 2.3e-09 66.2 243 27.2
TWI39G0651 Tripterygium wilfordii HOM05D003085 ORTHO05D003597 2.3e-09 66.2 216 29.2
Glyma.13G321700 Glycine max HOM05D003085 ORTHO05D003597 3.0e-09 65.9 253 26.9
Gohir.D09G087300 Gossypium hirsutum HOM05D003085 ORTHO05D003597 3.0e-09 65.9 55 58.2
Gorai.006G103700 Gossypium raimondii HOM05D003085 ORTHO05D003597 3.0e-09 65.9 55 58.2
PGR142G2216 Punica granatum HOM05D003085 ORTHO05D003597 3.9e-09 65.5 243 25.1
TWI39G0171 Tripterygium wilfordii HOM05D003085 ORTHO05D003597 3.9e-09 65.5 216 29.6
Hma1.2p1_1225F.1_g268530 Hydrangea macrophylla HOM05D003085 ORTHO05D003597 5.1e-09 65.1 55 58.2
Gohir.A09G087500 Gossypium hirsutum HOM05D003085 ORTHO05D003597 6.7e-09 64.7 55 56.4
Dinv29392 Davidia involucrata HOM05D003085 ORTHO05D003597 8.7e-09 64.3 55 56.4
Lj2C1002T12 Lonicera japonica HOM05D003085 ORTHO05D003597 8.7e-09 64.3 54 57.4
Manes.11G153700 Manihot esculenta HOM05D003085 ORTHO05D003597 8.7e-09 64.3 55 56.4
Aqoxy2G01565 Aquilegia oxysepala HOM05D003085 ORTHO05D003597 1.1e-08 63.9 244 27.0
HanXRQChr02g0055281 Helianthus annuus HOM05D003085 ORTHO05D003597 1.1e-08 63.9 55 54.5
Lj3g0001242 Lotus japonicus HOM05D003085 ORTHO05D003597 1.1e-08 63.9 55 56.4
Potri.006G119300 Populus trichocarpa HOM05D003085 ORTHO05D003597 1.1e-08 63.9 55 54.5
TWI75G1592 Tripterygium wilfordii HOM05D003085 ORTHO05D003597 1.1e-08 63.9 55 54.5
Duzib168G0424 Durio zibethinus HOM05D003085 ORTHO05D003597 1.5e-08 63.5 55 60.0
Nn2g13900 Nelumbo nucifera HOM05D003085 ORTHO05D003597 1.5e-08 63.5 244 27.5
HPP92_020788 Vanilla planifolia HOM05D003085 ORTHO05D003597 1.5e-08 63.5 240 27.5
Manes.04G011900 Manihot esculenta HOM05D003085 ORTHO05D003597 1.9e-08 63.2 55 58.2
Lalb_Chr22g0350441 Lupinus albus HOM05D003085 ORTHO05D003597 2.5e-08 62.8 55 56.4
RcHm_v2.0_Chr2g0132211 Rosa chinensis HOM05D003085 ORTHO05D003597 2.5e-08 62.8 74 48.6
Duzib170G0018 Durio zibethinus HOM05D003085 ORTHO05D003597 3.3e-08 62.4 55 58.2
Lj2C124T6 Lonicera japonica HOM05D003085 ORTHO05D003597 3.3e-08 62.4 49 63.3
Sabra09G0001200 Salix brachista HOM05D003085 ORTHO05D003597 3.3e-08 62.4 55 54.5
Atru.chr3.3493 Acer truncatum HOM05D003085 ORTHO05D003597 5.6e-08 61.6 55 56.4
DCAR_006137 Daucus carota HOM05D003085 ORTHO05D003597 7.4e-08 61.2 239 26.4
Duzib150G1237 Durio zibethinus HOM05D003085 ORTHO05D003597 7.4e-08 61.2 55 56.4
PSO063G4790 Papaver somniferum HOM05D003085 ORTHO05D003597 7.4e-08 61.2 249 26.1
Rhsim13G0102200 Rhododendron simsii HOM05D003085 ORTHO05D003597 7.4e-08 61.2 54 53.7
vmacro07357 Vaccinium macrocarpon HOM05D003085 ORTHO05D003597 7.4e-08 61.2 55 50.9
vmacro23002 Vaccinium macrocarpon HOM05D003085 ORTHO05D003597 7.4e-08 61.2 55 50.9
COL.COLO4_19228 Corchorus olitorius HOM05D003085 ORTHO05D003597 9.6e-08 60.8 55 56.4
Dinv35833 Davidia involucrata HOM05D003085 ORTHO05D003597 9.6e-08 60.8 55 52.7
Lsat_1_v5_gn_2_18340 Lactuca sativa HOM05D003085 ORTHO05D003597 9.6e-08 60.8 55 56.4
Lalb_Chr15g0080451 Lupinus albus HOM05D003085 ORTHO05D003597 1.3e-07 60.5 55 50.9
Psat7g191360 Pisum sativum HOM05D003085 ORTHO05D003597 1.3e-07 60.5 55 54.5
TWI75G0413 Tripterygium wilfordii HOM05D003085 ORTHO05D003597 1.3e-07 60.5 55 54.5
HanXRQChr13g0403631 Helianthus annuus HOM05D003085 ORTHO05D003597 1.6e-07 60.1 55 52.7
Lalb_Chr09g0332951 Lupinus albus HOM05D003085 ORTHO05D003597 1.6e-07 60.1 55 50.9
Atru.chr8.1705 Acer truncatum HOM05D003085 ORTHO05D003597 2.1e-07 59.7 54 53.7
CiPaw.14G105800 Carya illinoinensis HOM05D003085 ORTHO05D003597 2.1e-07 59.7 55 50.9
CiPaw.13G143900 Carya illinoinensis HOM05D003085 ORTHO05D003597 2.8e-07 59.3 55 54.5
Eucgr.K02425 Eucalyptus grandis HOM05D003085 ORTHO05D003597 2.8e-07 59.3 247 26.7
Haze_19477 Corylus avellana HOM05D003085 ORTHO05D003597 3.7e-07 58.9 225 28.0
Atru.chr8.1703 Acer truncatum HOM05D003085 ORTHO05D003597 4.8e-07 58.5 54 53.7
Cc01_g03790 Coffea canephora HOM05D003085 ORTHO05D154164 4.8e-07 58.5 56 53.6
Cfa016480 Carpinus fangiana HOM05D003085 ORTHO05D003597 6.2e-07 58.2 244 28.3
HanXRQChr14g0451821 Helianthus annuus HOM05D003085 ORTHO05D003597 6.2e-07 58.2 242 26.0
CSS0009589 Camellia sinensis var. sinensis HOM05D003085 ORTHO05D003597 8.1e-07 57.8 55 52.7
Sabra06G0093900 Salix brachista HOM05D003085 ORTHO05D003597 8.1e-07 57.8 55 47.3
TWI39G1299 Tripterygium wilfordii HOM05D003085 ORTHO05D003597 1.1e-06 57.4 133 31.6
Lsat_1_v5_gn_2_18380 Lactuca sativa HOM05D003085 ORTHO05D003597 1.4e-06 57.0 238 23.9
Zm00001eb175890 Zea mays HOM05D003085 ORTHO05D003597 1.4e-06 57.0 253 26.1
MELO3C004809.2 Cucumis melo HOM05D003085 ORTHO05D003597 1.8e-06 56.6 55 49.1
Lj1A215T21 Lonicera japonica HOM05D003085 ORTHO05D003597 1.8e-06 56.6 54 50.0
Nn6g35173 Nelumbo nucifera HOM05D003085 ORTHO05D003597 1.8e-06 56.6 54 50.0
Actinidia28934 Actinidia chinensis HOM05D003085 ORTHO05D003597 2.4e-06 56.2 55 47.3
ECA238G4421 Erigeron canadensis HOM05D003085 ORTHO05D003597 2.4e-06 56.2 55 50.9
PGR102G1078 Punica granatum HOM05D003085 ORTHO05D003597 2.4e-06 56.2 52 53.8
Eucgr.B03914 Eucalyptus grandis HOM05D003085 ORTHO05D003597 3.1e-06 55.8 54 50.0
TWI39G1267 Tripterygium wilfordii HOM05D003085 ORTHO05D003597 3.1e-06 55.8 133 31.6
CSS0033259 Camellia sinensis var. sinensis HOM05D003085 ORTHO05D003597 4.0e-06 55.5 55 50.9
Cc01_g03780 Coffea canephora HOM05D003085 ORTHO05D003597 4.0e-06 55.5 54 48.1
TWI32G1193 Tripterygium wilfordii HOM05D003085 ORTHO05D003597 4.0e-06 55.5 215 28.4
Manes.09G048734 Manihot esculenta HOM05D003085 ORTHO05D003597 5.3e-06 55.1 55 49.1
A04p21200 Brassica napus HOM05D003085 ORTHO05D003597 6.9e-06 54.7 55 49.1
BraA04t17689Z Brassica rapa HOM05D003085 ORTHO05D003597 6.9e-06 54.7 55 49.1
HPP92_003363 Vanilla planifolia HOM05D003085 ORTHO05D003597 6.9e-06 54.7 111 32.4
TWI74G1384 Tripterygium wilfordii HOM05D003085 ORTHO05D003597 9.0e-06 54.3 227 26.4


User provided reference genes

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