Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold27G11531 Striga asiatica HOM05D003277 ORTHO05D003275 1.3e-54 216.1 103 100.0
Migut.A00248 Erythranthe guttata HOM05D003277 ORTHO05D003275 8.4e-22 107.1 102 58.8
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 3.3e-18 95.1 92 55.4
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 3.9e-11 71.6 90 43.3
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 2.5e-10 68.9 92 46.7
Lsat_1_v5_gn_6_11260 Lactuca sativa HOM05D003277 ORTHO05D003275 3.3e-10 68.6 98 42.9
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 4.3e-10 68.2 98 41.8
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 9.6e-10 67.0 65 55.4
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.1e-09 65.9 93 41.9
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.6e-09 65.1 90 42.2
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.6e-09 65.1 90 42.2
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 3.6e-09 65.1 95 40.0
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 3.6e-09 65.1 104 36.5
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 4.8e-09 64.7 67 49.3
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 8.1e-09 63.9 87 41.4
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 1.1e-08 63.5 92 42.4
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 1.1e-08 63.5 85 44.7
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 1.1e-08 63.5 102 41.2
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 1.1e-08 63.5 102 41.2
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.1e-08 63.5 95 40.0
Rhsim07G0155500 Rhododendron simsii HOM05D003277 ORTHO05D003275 1.1e-08 63.5 95 41.1
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 1.4e-08 63.2 93 40.9
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 1.8e-08 62.8 97 38.1
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.4e-08 62.4 67 50.7
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.4e-08 62.4 67 50.7
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 2.4e-08 62.4 94 41.5
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 2.4e-08 62.4 92 42.4
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 2.4e-08 62.4 98 39.8
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 2.4e-08 62.4 69 50.7
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 2.4e-08 62.4 90 40.0
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 3.1e-08 62.0 91 44.0
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 3.1e-08 62.0 97 39.2
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 3.1e-08 62.0 91 42.9
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.0e-08 61.6 65 50.8
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 4.0e-08 61.6 62 50.0
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 5.3e-08 61.2 67 49.3
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 5.3e-08 61.2 102 38.2
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 6.9e-08 60.8 68 45.6
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 6.9e-08 60.8 108 36.1
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 1.2e-07 60.1 107 35.5
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 1.2e-07 60.1 98 36.7
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 1.2e-07 60.1 89 43.8
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.5e-07 59.7 93 38.7
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 2.0e-07 59.3 92 37.0
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 2.0e-07 59.3 92 35.9
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 2.0e-07 59.3 98 38.8
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 2.6e-07 58.9 86 38.4
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 3.4e-07 58.5 76 47.4
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 4.5e-07 58.2 63 46.0
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 4.5e-07 58.2 81 44.4
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 5.8e-07 57.8 62 46.8
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 5.8e-07 57.8 96 37.5
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 5.8e-07 57.8 73 45.2
Sopen12g003040 Solanum pennellii HOM05D003277 ORTHO05D003275 5.8e-07 57.8 103 37.9
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 7.6e-07 57.4 69 43.5
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 7.6e-07 57.4 84 36.9
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 7.6e-07 57.4 99 40.4
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 7.6e-07 57.4 101 36.6
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 9.9e-07 57.0 94 40.4
QL12p026142 Quercus lobata HOM05D003277 ORTHO05D003275 9.9e-07 57.0 93 38.7
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 9.9e-07 57.0 90 35.6
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.3e-06 56.6 107 32.7
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 1.3e-06 56.6 91 38.5
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 1.3e-06 56.6 92 38.0
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 1.3e-06 56.6 61 52.5
Medtr4g012350 Medicago truncatula HOM05D003277 ORTHO05D003275 1.3e-06 56.6 91 41.8
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 1.3e-06 56.6 74 44.6
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 1.3e-06 56.6 74 44.6
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.7e-06 56.2 96 37.5
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 1.7e-06 56.2 91 38.5
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 1.7e-06 56.2 95 37.9
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.2e-06 55.8 60 46.7
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 2.2e-06 55.8 94 39.4
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 2.9e-06 55.5 96 37.5
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 3.8e-06 55.1 92 35.9
Ca_01117_v3 Cicer arietinum L. HOM05D003111 ORTHO05D003502 4.9e-06 54.7 58 56.9
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 6.4e-06 54.3 63 42.9
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 6.4e-06 54.3 60 48.3
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 8.4e-06 53.9 65 41.5
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 8.4e-06 53.9 76 40.8
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 8.4e-06 53.9 96 40.6


User provided reference genes

Program Settings