Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 9.2e-119 430.3 219 100.0
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 2.0e-118 429.1 219 99.5
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 3.4e-105 385.2 220 86.4
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 1.1e-100 370.2 220 82.3
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 7.3e-100 367.5 220 81.8
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.2e-99 366.7 220 81.8
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 4.7e-99 364.8 220 80.5
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 1.1e-98 363.6 220 80.5
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 2.3e-98 362.5 220 79.5
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 1.2e-97 360.1 220 79.1
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 4.4e-97 358.2 220 81.8
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 7.6e-97 357.5 220 79.5
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 6.4e-96 354.4 220 78.2
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.9e-95 352.8 220 80.0
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 4.1e-95 351.7 229 77.3
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 4.1e-95 351.7 220 76.8
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 5.4e-95 351.3 220 77.3
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 4.6e-94 348.2 220 76.8
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 4.6e-94 348.2 220 76.8
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.0e-93 347.1 220 75.5
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.3e-93 345.9 220 75.9
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 3.0e-93 345.5 221 76.9
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 3.9e-93 345.1 221 77.8
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.1e-92 343.6 221 76.9
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.5e-92 343.2 221 76.9
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.9e-92 342.8 221 76.9
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 9.6e-92 340.5 221 75.1
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 1.2e-91 340.1 220 75.9
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.6e-91 339.7 220 75.9
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.8e-91 339.0 221 75.6
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 3.6e-91 338.6 221 76.5
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 3.6e-91 338.6 219 74.4
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 3.6e-91 338.6 220 75.9
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 4.7e-91 338.2 221 76.5
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 4.7e-91 338.2 221 76.0
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 6.2e-91 337.8 222 76.1
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 6.2e-91 337.8 221 76.5
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 8.1e-91 337.4 222 75.7
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 8.1e-91 337.4 219 74.4
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 1.1e-90 337.0 221 76.0
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.4e-90 336.7 222 75.7
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 1.8e-90 336.3 221 76.0
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.1e-90 335.5 222 75.7
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 4.0e-90 335.1 221 74.7
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 5.2e-90 334.7 220 75.0
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 6.8e-90 334.3 221 76.5
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.4e-89 332.0 223 75.3
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 4.4e-89 331.6 220 74.1
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 4.4e-89 331.6 221 74.7
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 4.4e-89 331.6 220 75.5
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 4.4e-89 331.6 220 72.3
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.3e-88 330.1 221 73.8
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.7e-88 329.7 220 73.2
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.9e-88 328.9 221 74.7
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.9e-87 326.2 220 74.1
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 9.3e-87 323.9 233 69.1
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 1.3e-85 320.1 222 71.6
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 1.3e-85 320.1 222 71.6
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.7e-85 319.7 239 70.3
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 2.3e-85 319.3 222 71.6
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 3.0e-85 318.9 221 71.9
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.1e-85 318.2 220 71.4
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.5e-84 316.6 221 71.5
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 1.9e-84 316.2 221 71.5
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 2.5e-84 315.8 198 77.3
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 5.6e-84 314.7 221 71.0
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 5.6e-84 314.7 220 71.4
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 9.6e-84 313.9 220 72.7
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 2.8e-83 312.4 221 70.6
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 3.6e-83 312.0 221 71.9
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 2.4e-82 309.3 221 70.1
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 3.1e-82 308.9 220 70.5
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 5.8e-81 304.7 300 55.7
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.9e-80 301.6 204 72.1
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 6.4e-80 301.2 219 68.0
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 8.4e-80 300.8 221 67.9
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 8.4e-80 300.8 219 67.6
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 9.3e-79 297.4 222 67.6
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.6e-78 296.6 320 51.9
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 6.0e-78 294.7 222 67.1
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.3e-77 292.7 193 75.1
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.3e-77 292.7 221 67.4
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.3e-77 292.7 221 67.4
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 3.9e-77 292.0 194 71.1
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 5.1e-77 291.6 200 73.5
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 6.6e-77 291.2 194 73.2
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 1.5e-76 290.0 222 65.8
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.5e-76 290.0 197 73.1
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 1.5e-76 290.0 213 68.1
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 5.6e-76 288.1 194 73.7
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 1.3e-75 287.0 223 65.9
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 1.3e-75 287.0 223 65.9
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.3e-75 287.0 194 73.2
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.8e-75 285.8 193 72.0
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 1.4e-74 283.5 221 65.6
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.4e-74 283.5 289 54.3
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 1.8e-74 283.1 221 65.2
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 1.8e-74 283.1 221 65.2
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.4e-74 282.7 211 66.8
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 2.4e-74 282.7 223 65.0
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 6.9e-74 281.2 221 65.2
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 3.4e-73 278.9 222 66.7
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 5.8e-73 278.1 196 70.9
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 7.6e-73 277.7 183 72.7
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 9.9e-73 277.3 224 62.5
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 9.9e-73 277.3 196 70.9
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 9.9e-73 277.3 199 70.4
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.3e-72 276.9 214 63.1
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.7e-72 276.6 194 70.1
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 2.2e-72 276.2 221 64.3
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 3.8e-72 275.4 214 63.6
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.9e-71 273.1 194 69.6
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 3.5e-70 268.9 180 75.6
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.0e-69 267.3 194 69.6
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.5e-68 263.5 220 58.6
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 4.3e-68 261.9 170 74.7
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 5.6e-68 261.5 172 73.3
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 2.1e-67 259.6 210 63.3
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.2e-65 253.8 219 58.9
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.3e-64 250.4 227 59.9
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.3e-64 250.4 227 59.9
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 4.2e-63 245.4 222 59.9
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.3e-60 235.3 170 67.6
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.6e-59 233.4 221 53.8
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 3.7e-59 232.3 196 62.8
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 4.8e-59 231.9 219 55.3
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 8.2e-59 231.1 164 72.0
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.8e-58 229.9 195 59.0
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 7.6e-57 224.6 220 50.0
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.8e-56 222.2 192 57.3
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 5.0e-56 221.9 222 50.5
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 6.5e-56 221.5 147 76.9
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 5.0e-48 195.3 162 59.9
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 5.7e-44 181.8 182 55.5
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.8e-42 176.8 219 44.3
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 9.4e-39 164.5 175 51.4
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 3.6e-38 162.5 248 44.0
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 9.7e-36 154.5 93 75.3
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 8.2e-35 151.4 228 37.7
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.0e-32 144.4 224 37.1
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 2.9e-32 142.9 218 37.6
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 1.2e-30 137.5 100 71.0
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.3e-28 129.4 141 46.8
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.5e-25 119.4 84 70.2
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 6.1e-22 108.6 84 59.5
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.3e-16 90.9 94 51.1
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.2e-15 86.3 85 60.0
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 2.4e-10 70.1 142 35.2
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 2.0e-09 67.0 206 25.2
unitig_899.g14971 Utricularia gibba HOM05D000351 ORTHO05D006179 1.7e-08 63.9 43 67.4


User provided reference genes

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