Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 0.0e+00 1283.9 635 100.0
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 2.3e-234 815.8 522 75.9
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 6.5e-234 814.3 526 76.2
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 4.5e-227 791.6 528 73.1
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 6.8e-223 777.7 529 71.1
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 9.8e-222 773.9 521 70.4
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 1.7e-221 773.1 529 70.5
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 6.4e-221 771.2 521 70.2
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 8.6e-218 760.8 525 69.7
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 3.1e-207 725.7 569 63.3
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 8.9e-207 724.2 501 69.7
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 1.5e-206 723.4 523 67.1
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 3.4e-206 722.2 526 67.7
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 7.5e-206 721.1 521 67.4
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 1.3e-205 720.3 522 66.7
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 2.9e-205 719.2 522 64.4
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 2.9e-205 719.2 532 65.8
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 3.7e-205 718.8 517 66.7
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 4.9e-205 718.4 518 66.8
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 4.9e-205 718.4 524 65.8
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.3e-205 717.6 522 66.1
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 1.4e-204 716.8 520 66.9
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 5.4e-204 714.9 517 66.3
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 2.1e-203 713.0 522 65.5
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 6.0e-203 711.4 526 66.3
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 1.0e-202 710.7 505 68.1
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 1.0e-202 710.7 525 65.1
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 1.3e-202 710.3 518 67.0
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 1.7e-202 709.9 524 65.6
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 2.3e-202 709.5 523 65.8
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 5.1e-202 708.4 543 64.6
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 1.9e-201 706.4 522 64.8
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 1.9e-201 706.4 526 65.8
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 9.5e-201 704.1 523 64.1
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 1.2e-200 703.7 522 64.8
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 4.7e-200 701.8 522 64.2
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 2.4e-199 699.5 523 63.7
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 4.0e-199 698.7 519 65.5
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 5.2e-199 698.4 530 62.5
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 8.9e-199 697.6 522 63.4
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 1.5e-198 696.8 525 63.2
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 3.4e-198 695.7 538 63.0
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 3.4e-198 695.7 523 63.1
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 5.8e-198 694.9 518 65.3
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 9.9e-198 694.1 519 64.4
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 9.9e-198 694.1 524 65.3
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 9.9e-198 694.1 528 63.6
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 2.2e-197 693.0 521 62.8
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 3.8e-197 692.2 528 62.7
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 8.4e-197 691.0 519 63.6
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 1.9e-196 689.9 487 69.0
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 2.4e-196 689.5 521 63.0
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 4.1e-196 688.7 524 63.2
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 5.4e-196 688.3 516 64.3
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 9.2e-196 687.6 523 62.1
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 7.8e-195 684.5 524 63.9
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.7e-194 683.3 519 64.5
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 2.3e-194 682.9 519 64.2
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 3.9e-194 682.2 526 63.9
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 7.3e-193 677.9 520 64.4
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 2.1e-192 676.4 580 58.8
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 2.8e-192 676.0 492 65.2
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 3.6e-192 675.6 522 63.4
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 3.6e-192 675.6 522 63.4
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 6.2e-192 674.9 521 62.2
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 1.4e-191 673.7 523 61.4
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 1.8e-191 673.3 517 61.9
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 3.1e-191 672.5 522 62.6
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 6.9e-191 671.4 522 62.8
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 9.0e-191 671.0 517 61.5
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 1.2e-190 670.6 522 62.6
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 3.4e-190 669.1 522 62.5
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 2.1e-187 659.8 569 59.2
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 3.9e-186 655.6 546 59.7
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 5.1e-186 655.2 547 59.8
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 3.4e-182 642.5 473 65.1
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 5.8e-182 641.7 526 58.9
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.4e-180 637.1 501 63.3
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 4.2e-180 635.6 506 63.0
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 3.5e-179 632.5 523 59.1
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 3.5e-179 632.5 522 58.4
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 7.9e-179 631.3 514 62.3
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 1.6e-176 623.6 443 67.5
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.1e-176 623.2 569 57.5
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 8.1e-176 621.3 526 60.1
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 8.1e-176 621.3 713 47.7
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 4.0e-175 619.0 554 58.1
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 1.5e-174 617.1 526 59.1
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 1.5e-174 617.1 521 56.2
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.2e-166 590.9 512 59.2
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 7.6e-166 588.2 605 55.0
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 1.4e-164 583.9 534 53.4
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 5.5e-164 582.0 439 62.4
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.8e-162 577.0 402 68.4
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 2.0e-158 563.5 399 67.7
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 6.1e-147 525.4 478 58.4
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 3.0e-146 523.1 342 73.7
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 8.2e-144 515.0 425 57.6
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 6.1e-139 498.8 500 53.6
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 8.0e-139 498.4 356 70.2
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 1.7e-136 490.7 532 47.9
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 1.1e-135 488.0 522 47.3
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.1e-132 478.0 342 66.1
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.2e-132 476.1 370 62.4
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 7.5e-129 465.3 508 49.2
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.8e-120 436.8 312 68.6
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 8.3e-120 435.3 325 62.5
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 1.1e-111 408.3 288 67.4
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 9.2e-111 405.2 523 44.7
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 2.9e-109 400.2 561 40.3
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 4.0e-106 389.8 441 45.6
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 1.4e-103 381.3 271 67.2
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.2e-94 351.7 259 66.0
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 4.7e-83 313.2 234 65.0
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.4e-82 310.8 232 64.7
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.4e-82 310.8 232 64.7
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 7.6e-81 305.8 231 63.2
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.2e-80 304.3 205 68.8
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 9.2e-79 298.9 219 64.4
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 1.2e-73 282.0 504 37.9
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 3.6e-67 260.4 240 55.8
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 1.1e-66 258.8 172 70.3
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 5.8e-65 253.1 353 44.5
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 6.9e-58 229.6 175 64.6
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 5.8e-57 226.5 551 31.6
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.4e-55 221.9 582 30.4
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 1.9e-52 211.5 175 57.7
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 2.5e-52 211.1 515 30.9
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 1.7e-48 198.4 492 31.7
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 7.7e-41 172.9 162 56.8
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 2.2e-40 171.4 324 35.8
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.0e-37 162.5 235 41.3
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 3.6e-30 137.5 99 64.6
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 3.0e-29 134.4 109 60.6
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.1e-28 132.5 103 68.0
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 1.3e-27 129.0 102 60.8
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 3.7e-27 127.5 78 79.5
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 4.1e-26 124.0 68 77.9
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 8.5e-24 116.3 67 82.1
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.7e-22 110.5 142 44.4
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 5.0e-16 90.5 129 39.5
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.7e-14 84.7 45 68.9
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 3.7e-11 74.3 97 42.3
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.7e-11 74.3 142 35.2
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 7.7e-09 66.6 55 60.0
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 1.1e-07 62.8 140 32.9
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 6.1e-06 57.0 44 61.4


User provided reference genes

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