Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 1.0e-100 370.2 201 100.0
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 5.3e-73 278.1 200 75.5
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 7.7e-72 274.2 215 70.7
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 6.5e-71 271.2 200 74.0
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 4.2e-70 268.5 192 72.4
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 2.1e-69 266.2 192 74.0
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 2.1e-69 266.2 192 70.8
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 1.0e-68 263.8 192 70.8
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 4.0e-68 261.9 199 71.9
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 4.0e-68 261.9 199 71.9
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 5.2e-68 261.5 199 72.4
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 1.2e-67 260.4 201 71.1
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 1.2e-67 260.4 199 70.4
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 1.5e-67 260.0 192 71.4
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 3.4e-67 258.8 199 71.9
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 5.7e-67 258.1 198 72.7
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 9.8e-67 257.3 199 70.4
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 1.3e-66 256.9 199 69.8
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 1.3e-66 256.9 198 72.2
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 1.7e-66 256.5 197 72.1
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 4.8e-66 255.0 199 70.4
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 8.3e-66 254.2 191 71.2
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 1.1e-65 253.8 199 72.4
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 1.1e-65 253.8 199 72.4
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 1.1e-65 253.8 199 72.4
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 1.1e-65 253.8 199 72.4
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 1.4e-65 253.4 200 69.0
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 1.8e-65 253.1 191 71.2
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 1.8e-65 253.1 162 82.1
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 3.1e-65 252.3 198 71.2
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 4.1e-65 251.9 198 71.2
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 5.4e-65 251.5 199 71.9
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 5.4e-65 251.5 199 71.9
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 5.4e-65 251.5 201 70.6
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 7.0e-65 251.1 199 70.9
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 7.0e-65 251.1 201 69.2
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 7.0e-65 251.1 200 69.0
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 9.1e-65 250.8 201 69.2
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 9.1e-65 250.8 199 68.3
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 1.2e-64 250.4 201 69.2
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 1.6e-64 250.0 201 69.2
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 2.7e-64 249.2 200 71.0
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 2.7e-64 249.2 199 67.8
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 2.7e-64 249.2 199 69.8
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 3.5e-64 248.8 162 79.0
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 4.5e-64 248.4 199 69.3
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 5.9e-64 248.1 199 69.3
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 5.9e-64 248.1 184 70.7
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 5.9e-64 248.1 200 68.5
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 1.0e-63 247.3 202 69.3
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 1.3e-63 246.9 199 69.3
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 1.7e-63 246.5 199 69.8
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.7e-63 246.5 199 69.8
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.3e-63 246.1 199 69.8
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.3e-63 246.1 199 69.8
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.3e-63 246.1 199 69.8
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 2.9e-63 245.7 199 69.3
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 2.9e-63 245.7 199 71.4
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 2.9e-63 245.7 200 67.5
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 2.9e-63 245.7 172 74.4
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 5.0e-63 245.0 201 68.2
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 6.6e-63 244.6 198 69.7
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 6.6e-63 244.6 198 67.7
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 8.6e-63 244.2 199 68.8
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 8.6e-63 244.2 202 67.3
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 8.6e-63 244.2 199 69.3
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 8.6e-63 244.2 199 66.8
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 1.1e-62 243.8 201 68.2
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 1.1e-62 243.8 201 67.7
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 1.1e-62 243.8 201 68.7
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 1.1e-62 243.8 199 68.8
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 1.1e-62 243.8 198 69.2
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 1.9e-62 243.0 199 68.3
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 2.5e-62 242.7 199 69.3
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 4.2e-62 241.9 203 68.5
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 4.2e-62 241.9 153 82.4
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 5.5e-62 241.5 199 67.3
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 5.5e-62 241.5 199 65.8
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 7.2e-62 241.1 191 69.1
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 1.2e-61 240.4 203 68.0
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 2.1e-61 239.6 193 69.9
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 3.6e-61 238.8 203 67.5
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 3.6e-61 238.8 201 68.2
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 6.1e-61 238.0 193 65.8
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 8.0e-61 237.7 193 66.8
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 8.0e-61 237.7 199 69.3
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 1.8e-60 236.5 201 65.2
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 3.0e-60 235.7 188 67.6
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 8.9e-60 234.2 201 65.2
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 1.2e-59 233.8 201 67.7
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 2.0e-59 233.0 210 63.8
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 3.4e-59 232.3 201 65.7
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 2.8e-58 229.2 194 67.5
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 4.9e-58 228.4 201 66.2
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 4.9e-58 228.4 193 66.3
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 8.3e-58 227.6 199 64.3
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 2.7e-56 222.6 200 64.0
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 1.5e-51 206.8 147 76.9
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 1.5e-46 190.3 161 59.6
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 9.5e-46 187.6 170 54.7
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 2.9e-42 176.0 172 54.7
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 6.0e-40 168.3 105 82.9
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.3e-39 167.2 203 49.3
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.7e-39 166.8 203 49.3
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.7e-39 166.8 172 52.3
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 6.6e-39 164.9 196 49.5
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 1.9e-38 163.3 161 52.2
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 4.7e-37 158.7 103 79.6
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 4.7e-37 158.7 144 64.6
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 2.3e-36 156.4 94 86.2
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 5.4e-33 145.2 103 73.8
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 7.1e-33 144.8 102 76.5
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 1.4e-28 130.6 113 67.3
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 3.4e-27 125.9 90 72.2
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 3.8e-26 122.5 86 73.3
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 1.3e-23 114.0 95 65.3
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 2.3e-23 113.2 157 40.8
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 1.1e-22 110.9 165 40.0
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 7.3e-22 108.2 71 76.1
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 1.3e-18 97.4 164 34.1
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 1.2e-16 90.9 88 54.5
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 4.3e-14 82.4 71 57.7
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 9.6e-14 81.3 95 56.8
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 8.4e-10 68.2 156 31.4
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 5.4e-09 65.5 90 45.6
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 1.2e-08 64.3 44 61.4
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 4.6e-08 62.4 43 72.1


User provided reference genes

Program Settings