Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 3.4e-56 221.5 115 100.0
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 4.5e-24 114.8 124 60.5
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 1.6e-21 106.3 113 57.5
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 3.5e-21 105.1 116 55.2
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 4.3e-19 98.2 115 57.4
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 4.3e-19 98.2 112 53.6
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 7.4e-19 97.4 122 50.8
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.3e-18 96.7 113 53.1
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 1.3e-18 96.7 123 51.2
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 2.8e-18 95.5 112 56.2
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 3.7e-18 95.1 113 55.8
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.1e-17 93.6 124 50.0
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 1.1e-17 93.6 113 55.8
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 1.1e-17 93.6 111 55.9
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 1.4e-17 93.2 116 47.4
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 1.4e-17 93.2 112 53.6
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 1.8e-17 92.8 112 53.6
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 2.4e-17 92.4 111 55.9
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 2.4e-17 92.4 114 50.0
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 3.1e-17 92.0 118 50.8
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 3.1e-17 92.0 118 50.8
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 3.1e-17 92.0 111 56.8
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 3.1e-17 92.0 115 53.9
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 5.3e-17 91.3 111 55.9
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 5.3e-17 91.3 114 51.8
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 6.9e-17 90.9 116 50.9
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 6.9e-17 90.9 123 50.4
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 9.0e-17 90.5 118 49.2
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 9.0e-17 90.5 114 54.4
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 9.0e-17 90.5 112 52.7
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 1.2e-16 90.1 112 52.7
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 2.0e-16 89.4 112 51.8
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 2.0e-16 89.4 122 47.5
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 2.6e-16 89.0 123 46.3
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 2.6e-16 89.0 120 49.2
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 2.6e-16 89.0 113 50.4
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 3.4e-16 88.6 114 50.0
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 4.5e-16 88.2 110 50.0
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 4.5e-16 88.2 110 52.7
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 5.9e-16 87.8 114 48.2
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 5.9e-16 87.8 122 46.7
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 5.9e-16 87.8 112 47.3
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 7.7e-16 87.4 114 48.2
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 7.7e-16 87.4 120 49.2
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 7.7e-16 87.4 115 48.7
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 7.7e-16 87.4 116 49.1
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 1.3e-15 86.7 111 51.4
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 1.3e-15 86.7 114 50.9
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 1.7e-15 86.3 113 49.6
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.7e-15 86.3 111 51.4
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 2.2e-15 85.9 111 50.5
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 2.2e-15 85.9 112 50.0
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 2.2e-15 85.9 112 46.4
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 2.2e-15 85.9 110 50.0
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 2.2e-15 85.9 111 48.6
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 2.9e-15 85.5 117 48.7
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 2.9e-15 85.5 113 46.0
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 2.9e-15 85.5 113 46.0
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 2.9e-15 85.5 118 46.6
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 2.9e-15 85.5 114 47.4
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 2.9e-15 85.5 113 49.6
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 2.9e-15 85.5 105 56.2
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 3.8e-15 85.1 112 46.4
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 3.8e-15 85.1 120 47.5
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 5.0e-15 84.7 112 46.4
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 5.0e-15 84.7 114 45.6
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 5.0e-15 84.7 111 51.4
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 6.5e-15 84.3 114 45.6
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 6.5e-15 84.3 113 52.2
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 6.5e-15 84.3 114 48.2
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 8.5e-15 84.0 112 47.3
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 8.5e-15 84.0 113 46.0
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 8.5e-15 84.0 113 49.6
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 8.5e-15 84.0 111 51.4
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 8.5e-15 84.0 118 45.8
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 1.1e-14 83.6 111 51.4
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 1.4e-14 83.2 120 47.5
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 1.4e-14 83.2 115 47.8
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 2.5e-14 82.4 114 49.1
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.5e-14 82.4 56 78.6
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 2.5e-14 82.4 111 50.5
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 2.5e-14 82.4 111 48.6
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 3.2e-14 82.0 116 45.7
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 3.2e-14 82.0 114 45.6
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 3.2e-14 82.0 113 46.9
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 5.5e-14 81.3 51 80.4
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 5.5e-14 81.3 113 46.0
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 5.5e-14 81.3 107 49.5
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 5.5e-14 81.3 111 48.6
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 5.5e-14 81.3 120 45.8
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 5.5e-14 81.3 113 46.9
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 7.2e-14 80.9 113 45.1
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 7.2e-14 80.9 111 49.5
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 7.2e-14 80.9 113 47.8
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 7.2e-14 80.9 112 45.5
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 9.4e-14 80.5 113 45.1
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 9.4e-14 80.5 51 84.3
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 9.4e-14 80.5 51 84.3
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 1.6e-13 79.7 114 46.5
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 2.1e-13 79.3 118 46.6
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 2.1e-13 79.3 108 48.1
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 3.6e-13 78.6 113 46.0
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 3.6e-13 78.6 108 49.1
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 3.6e-13 78.6 111 47.7
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 3.6e-13 78.6 111 48.6
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 4.6e-13 78.2 52 75.0
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 6.1e-13 77.8 110 47.3
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 6.1e-13 77.8 157 40.8
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 7.9e-13 77.4 111 49.5
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 7.9e-13 77.4 111 47.7
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 7.9e-13 77.4 113 45.1
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 7.9e-13 77.4 111 45.0
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 1.0e-12 77.0 118 43.2
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 1.0e-12 77.0 113 46.0
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.8e-12 76.3 129 39.5
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 1.8e-12 76.3 113 45.1
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 2.3e-12 75.9 111 45.0
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 3.0e-12 75.5 113 47.8
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 5.1e-12 74.7 113 47.8
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 6.7e-12 74.3 113 45.1
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 6.7e-12 74.3 119 46.2
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 8.8e-12 73.9 110 45.5
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.1e-11 73.6 111 44.1
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 2.0e-11 72.8 53 71.7
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 7.4e-11 70.9 100 47.0
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 1.7e-10 69.7 53 69.8
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 2.2e-10 69.3 108 46.3
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 4.8e-10 68.2 105 46.7
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 6.3e-10 67.8 120 39.2
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 6.3e-10 67.8 110 46.4
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 8.2e-10 67.4 54 64.8
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 8.2e-10 67.4 54 64.8
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.8e-09 66.2 126 42.1
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.4e-09 65.9 111 38.7
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 1.2e-08 63.5 106 40.6
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 7.7e-08 60.8 53 58.5
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 1.0e-07 60.5 51 64.7
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 1.1e-06 57.0 114 37.7
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 1.4e-06 56.6 117 37.6
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 3.2e-06 55.5 32 81.2
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 4.2e-06 55.1 112 37.5
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 7.2e-06 54.3 108 39.8


User provided reference genes

Program Settings