Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 0.0e+00 1207.6 605 100.0
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 6.0e-261 904.0 605 74.5
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 1.1e-259 899.8 604 74.2
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 4.8e-250 867.8 641 69.0
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 5.6e-235 817.8 678 63.3
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 1.1e-230 803.5 606 67.3
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.9e-230 802.7 607 66.7
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 7.1e-230 800.8 608 66.0
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 1.5e-224 783.1 607 64.9
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 2.0e-224 782.7 607 64.9
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 3.2e-222 775.4 607 63.6
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 2.3e-220 769.2 606 64.2
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 4.3e-219 765.0 608 63.3
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 1.6e-218 763.1 607 63.1
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 3.7e-218 761.9 682 58.7
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 1.2e-216 756.9 611 63.5
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.9e-215 752.3 606 62.7
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 1.4e-214 750.0 610 61.8
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 3.2e-214 748.8 609 61.9
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 1.2e-213 746.9 612 61.6
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 2.7e-213 745.7 641 59.8
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 1.8e-212 743.0 612 61.8
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 2.0e-211 739.6 606 61.6
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 4.3e-211 738.4 610 61.0
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 5.7e-211 738.0 636 59.7
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 7.4e-211 737.6 613 61.0
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 7.4e-211 737.6 609 61.9
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 1.3e-210 736.9 607 60.6
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 8.2e-210 734.2 610 62.0
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 1.5e-208 729.9 609 61.2
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 4.5e-208 728.4 611 59.6
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 5.9e-208 728.0 612 60.8
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 1.3e-207 726.9 607 61.4
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 1.3e-207 726.9 607 61.3
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.7e-207 726.5 612 59.8
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 2.9e-207 725.7 609 60.9
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 5.0e-207 724.9 604 59.6
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 5.0e-207 724.9 610 60.3
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 8.5e-207 724.2 609 60.8
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 9.4e-206 720.7 609 59.6
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.2e-205 720.3 612 59.2
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.6e-205 719.9 607 61.0
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 2.1e-205 719.5 607 61.1
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 2.7e-205 719.2 612 59.0
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 4.7e-205 718.4 607 59.8
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 4.7e-205 718.4 609 59.3
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 6.1e-205 718.0 611 60.6
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 1.0e-204 717.2 608 59.0
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.0e-204 715.7 608 60.0
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 3.3e-203 712.2 611 60.1
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 9.7e-203 710.7 615 59.3
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 4.8e-202 708.4 607 60.5
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 4.8e-202 708.4 604 58.1
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 8.2e-202 707.6 607 59.3
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 5.3e-201 704.9 616 58.8
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 7.7e-200 701.0 608 59.7
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.0e-199 700.7 606 57.8
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 2.9e-199 699.1 608 59.7
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 2.9e-199 699.1 605 58.0
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 5.0e-199 698.4 606 58.7
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.1e-198 697.2 616 57.1
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 9.4e-198 694.1 604 58.8
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.2e-197 693.7 607 57.5
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 2.1e-197 693.0 608 58.7
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 3.6e-197 692.2 606 57.3
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 2.3e-196 689.5 609 58.5
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 4.0e-196 688.7 614 58.0
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 1.2e-195 687.2 619 56.5
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 2.6e-195 686.0 630 56.7
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 5.7e-195 684.9 609 58.9
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 1.3e-194 683.7 632 56.8
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 6.3e-194 681.4 605 57.2
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 8.2e-194 681.0 610 58.0
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 2.4e-193 679.5 610 56.6
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 7.0e-193 677.9 618 57.1
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 1.2e-192 677.2 606 57.9
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 1.6e-192 676.8 612 57.8
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 7.7e-192 674.5 548 62.6
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.3e-191 673.7 609 56.3
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 1.8e-188 663.3 611 56.5
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 5.2e-188 661.8 610 55.7
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 3.7e-186 655.6 610 55.9
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.4e-185 653.7 617 54.9
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 9.1e-185 651.0 613 55.5
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 1.2e-184 650.6 616 56.5
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 7.7e-184 647.9 616 55.0
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.0e-183 647.5 615 55.3
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.0e-183 647.5 615 55.3
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 1.7e-183 646.7 569 57.5
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 8.5e-183 644.4 612 54.9
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 1.2e-181 640.6 577 57.9
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 6.8e-180 634.8 632 53.8
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 1.2e-179 634.0 609 55.0
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 8.3e-178 627.9 590 56.4
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 1.1e-177 627.5 608 54.3
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 2.5e-174 616.3 517 60.0
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.8e-172 610.1 572 55.9
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 2.0e-171 606.7 613 51.9
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 1.4e-169 600.5 614 51.0
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 3.0e-167 592.8 614 51.3
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 3.3e-166 589.3 614 51.8
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 4.9e-162 575.5 616 50.0
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 2.8e-157 559.7 603 49.9
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 8.9e-156 554.7 535 55.0
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 1.3e-154 550.8 541 55.1
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 1.9e-153 547.0 540 54.4
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 5.6e-150 535.4 613 46.5
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 3.4e-147 526.2 426 64.1
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 8.1e-141 505.0 563 50.1
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 8.1e-141 505.0 453 58.1
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 8.7e-135 485.0 484 54.5
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 1.0e-127 461.5 625 41.4
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 8.1e-125 451.8 589 45.0
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 4.3e-118 429.5 616 42.7
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 4.2e-113 412.9 626 38.7
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 6.0e-112 409.1 380 54.5
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 4.3e-110 402.9 291 70.4
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 6.3e-109 399.1 611 41.7
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 2.8e-101 373.6 259 72.2
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.0e-99 367.5 305 57.0
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 3.3e-94 350.1 638 35.9
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 9.1e-92 342.0 424 48.8
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 4.5e-91 339.7 406 48.5
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 5.7e-86 322.8 287 59.2
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 5.0e-82 309.7 623 34.8
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.6e-75 288.1 259 59.1
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 8.5e-74 282.3 477 39.4
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 2.8e-61 240.7 283 46.3
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 9.5e-57 225.7 131 74.0
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 2.0e-51 208.0 167 63.5
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 5.0e-50 203.4 299 42.5
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 1.1e-49 202.2 609 29.1
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 3.7e-45 187.2 285 36.5
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 2.4e-44 184.5 140 58.6
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 5.4e-36 156.8 134 58.2
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 1.6e-35 155.2 128 61.7
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 2.0e-30 138.3 116 61.2
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 4.4e-30 137.1 400 30.0
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 5.8e-30 136.7 135 45.2
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 1.3e-29 135.6 94 64.9
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 5.1e-26 123.6 900 22.6
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 6.9e-23 113.2 80 57.5
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.3e-18 98.2 80 58.8
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 2.8e-16 91.3 127 37.8
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.1e-15 89.4 88 46.6
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 7.6e-14 83.2 55 63.6
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.9e-12 78.6 108 42.6
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 2.1e-11 75.1 116 35.3
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 2.1e-11 75.1 116 35.3
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 2.7e-11 74.7 42 73.8
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 2.7e-11 74.7 42 73.8
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 1.3e-10 72.4 41 73.2
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 1.3e-10 72.4 57 57.9
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 2.3e-10 71.6 41 73.2
COL.COLO4_19455 Corchorus olitorius HOM05D004766 ORTHO05D006159 7.6e-06 56.6 35 77.1


User provided reference genes

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