Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 8.7e-232 806.6 403 100.0
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.2e-187 659.1 400 80.5
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 5.0e-187 657.9 401 80.0
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 3.5e-180 635.2 402 76.4
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 7.5e-175 617.5 403 73.9
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 1.7e-174 616.3 400 72.8
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 4.8e-174 614.8 400 72.5
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 4.8e-174 614.8 431 71.5
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 3.1e-173 612.1 402 72.9
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 7.0e-173 610.9 402 74.6
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.2e-172 610.1 402 73.1
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 3.5e-172 608.6 402 72.1
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 3.5e-172 608.6 402 72.1
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 5.9e-172 607.8 402 72.9
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 1.1e-170 603.6 402 71.6
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 5.5e-170 601.3 405 71.9
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 5.5e-170 601.3 402 72.1
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.2e-169 600.1 405 70.4
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.6e-169 599.7 402 72.1
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 1.6e-169 599.7 405 70.4
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 2.7e-169 599.0 403 70.5
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 3.0e-168 595.5 402 70.6
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 8.8e-168 594.0 400 70.2
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 3.4e-167 592.0 405 70.4
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 3.4e-167 592.0 399 71.7
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 3.4e-167 592.0 399 71.7
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 4.4e-167 591.7 402 70.6
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 4.4e-167 591.7 402 70.1
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 2.8e-166 589.0 399 70.9
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 4.8e-166 588.2 402 69.9
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 1.1e-165 587.0 402 71.4
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 2.4e-165 585.9 402 69.2
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 9.1e-165 583.9 408 69.4
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.6e-164 583.2 402 68.4
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 1.6e-164 583.2 402 68.9
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 2.0e-164 582.8 403 71.7
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 2.7e-164 582.4 402 69.9
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 2.7e-164 582.4 402 70.1
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 2.7e-164 582.4 403 70.2
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 3.5e-164 582.0 402 70.1
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 5.9e-164 581.3 402 70.4
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 7.7e-164 580.9 402 69.4
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.7e-163 579.7 402 68.9
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 2.2e-163 579.3 404 69.1
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 2.9e-163 578.9 402 68.4
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.9e-163 578.9 402 68.4
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 3.8e-163 578.6 400 70.0
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 8.5e-163 577.4 402 68.9
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.5e-162 576.6 402 69.2
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.5e-162 576.6 402 68.9
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 2.5e-162 575.9 402 68.9
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 3.2e-162 575.5 402 70.1
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 4.2e-162 575.1 402 66.9
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 3.6e-161 572.0 402 70.1
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 3.6e-161 572.0 402 67.4
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 1.8e-160 569.7 402 69.7
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 6.8e-160 567.8 402 69.2
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 6.8e-160 567.8 401 68.6
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 6.8e-160 567.8 401 69.1
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 4.4e-159 565.1 400 69.0
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 9.8e-159 563.9 401 68.3
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.2e-158 562.8 392 68.1
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 3.7e-158 562.0 403 69.5
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.9e-158 561.6 392 68.1
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.1e-157 560.5 402 67.9
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.4e-157 560.1 403 70.5
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 3.1e-157 558.9 402 67.7
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 9.2e-157 557.4 394 67.5
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 3.5e-156 555.4 400 67.2
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 3.5e-156 555.4 403 69.0
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 5.9e-156 554.7 402 67.4
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 5.9e-156 554.7 403 69.0
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 2.3e-155 552.7 402 66.9
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 2.3e-155 552.7 403 68.0
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 2.9e-155 552.4 423 65.5
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 3.8e-155 552.0 393 68.2
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 5.0e-155 551.6 402 67.9
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.9e-154 549.7 403 66.0
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 2.5e-154 549.3 400 66.0
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 5.6e-154 548.1 402 68.2
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 1.2e-153 547.0 400 65.8
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.6e-153 546.6 407 67.1
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 4.7e-153 545.0 401 66.8
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 8.0e-153 544.3 406 65.8
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 8.0e-153 544.3 406 65.8
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.4e-152 543.5 401 66.6
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 1.4e-152 543.5 352 74.1
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 1.8e-152 543.1 406 66.0
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 1.8e-152 543.1 406 66.0
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 1.8e-152 543.1 406 66.0
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 2.3e-152 542.7 399 67.9
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 3.0e-152 542.3 403 68.5
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 8.9e-152 540.8 406 65.3
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 8.9e-152 540.8 400 67.5
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 1.5e-151 540.0 406 65.3
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 7.5e-151 537.7 402 66.4
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 9.8e-151 537.3 406 65.0
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 1.3e-150 537.0 402 66.7
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.7e-150 536.6 402 65.4
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.4e-149 533.5 400 66.2
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.6e-148 530.0 400 66.2
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 2.0e-148 529.6 403 64.3
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 4.6e-148 528.5 406 64.5
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 7.8e-148 527.7 353 71.7
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 1.3e-147 526.9 406 63.8
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 3.0e-147 525.8 406 64.3
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 6.6e-147 524.6 400 65.0
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 1.1e-146 523.9 486 56.2
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 4.3e-146 521.9 402 65.9
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 2.8e-145 519.2 402 65.4
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.0e-144 517.3 400 64.2
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 6.8e-144 514.6 402 63.9
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 6.4e-142 508.1 399 61.2
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 1.2e-140 503.8 399 60.7
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 2.8e-137 492.7 353 68.8
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 2.6e-135 486.1 311 74.6
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.1e-133 480.7 403 59.8
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.9e-133 479.9 403 59.8
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 6.0e-132 474.9 406 58.4
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.2e-129 467.2 404 58.7
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 6.0e-124 448.4 410 55.4
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 3.6e-121 439.1 400 55.8
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 5.8e-119 431.8 315 68.9
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 2.0e-111 406.8 376 55.3
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 1.4e-104 384.0 267 69.3
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 1.5e-103 380.6 313 61.0
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 9.3e-101 371.3 407 48.9
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 1.0e-99 367.9 267 69.7
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 3.0e-99 366.3 270 65.6
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 5.6e-98 362.1 417 48.0
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 5.6e-98 362.1 414 50.2
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 1.3e-97 360.9 416 48.3
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 3.2e-85 319.7 409 44.3
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 1.0e-78 298.1 251 61.8
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.6e-76 290.8 444 39.6
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 6.1e-68 262.3 170 72.9
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 7.4e-66 255.4 161 76.4
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 6.3e-65 252.3 173 72.8
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.2e-60 238.0 176 67.6
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 4.4e-58 229.6 163 64.4
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.6e-55 221.1 213 54.0
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 7.2e-53 212.2 189 56.1
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 4.7e-52 209.5 342 35.7
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 6.1e-52 209.1 135 73.3
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 5.7e-50 202.6 148 63.5
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 5.9e-47 192.6 112 80.4
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 2.9e-33 147.1 93 75.3
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 3.1e-27 127.1 97 61.9
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 5.4e-24 116.3 97 60.8
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 1.3e-17 95.1 70 64.3
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 2.2e-17 94.4 82 57.3
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.6e-15 88.2 61 72.1


User provided reference genes

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