Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold274G46488 Striga asiatica HOM05D005723 ORTHO05D005968 4.0e-170 601.3 293 100.0
Migut.K00036 Erythranthe guttata HOM05D005723 ORTHO05D005968 3.1e-130 468.8 298 79.2
Peaxi162Scf00258g00623 Petunia axillaris HOM05D005723 ORTHO05D005968 3.2e-111 405.6 296 70.9
Solyc03g062830.3 Solanum lycopersicum HOM05D005723 ORTHO05D005968 9.4e-111 404.1 293 71.7
Sopen03g015150 Solanum pennellii HOM05D005723 ORTHO05D005968 2.7e-110 402.5 293 71.3
Actinidia17274 Actinidia chinensis HOM05D005723 ORTHO05D005968 1.8e-109 399.8 292 70.9
Potri.006G192800 Populus trichocarpa HOM05D005723 ORTHO05D005968 2.6e-108 396.0 302 67.5
Cfa020161 Carpinus fangiana HOM05D005723 ORTHO05D005968 3.3e-108 395.6 297 68.7
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 5.7e-108 394.8 297 68.7
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 1.1e-106 390.6 296 68.2
CiPaw.09G030000 Carya illinoinensis HOM05D005723 ORTHO05D005968 1.8e-106 389.8 299 67.9
Sabra06G0148000 Salix brachista HOM05D005723 ORTHO05D005968 2.0e-105 386.3 305 64.9
FAN02G2166 Fragaria x ananassa HOM05D005723 ORTHO05D005968 2.7e-105 386.0 306 65.0
FAN14G2504 Fragaria x ananassa HOM05D005723 ORTHO05D005968 5.9e-105 384.8 307 65.1
RcHm_v2.0_Chr3g0479531 Rosa chinensis HOM05D005723 ORTHO05D005968 5.9e-105 384.8 298 66.8
Manes.08G043200 Manihot esculenta HOM05D005723 ORTHO05D005968 6.5e-104 381.3 296 65.9
Potri.016G045300 Populus trichocarpa HOM05D005723 ORTHO05D005968 2.5e-103 379.4 291 66.0
Cc06_g15920 Coffea canephora HOM05D005723 ORTHO05D005968 5.5e-103 378.3 317 63.7
HanXRQChr13g0390481 Helianthus annuus HOM05D005723 ORTHO05D005968 2.1e-102 376.3 293 65.5
SalBow1G1145 Salvia bowleyana HOM05D005723 ORTHO05D005968 2.1e-102 376.3 256 75.4
MSTRG.6477 Avicennia marina HOM05D005723 ORTHO05D005968 8.8e-101 370.9 292 63.0
Gohir.A09G128200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.5e-100 370.2 293 66.9
Prupe.7G077500 Prunus persica HOM05D005723 ORTHO05D005968 1.5e-100 370.2 234 74.8
Oeu024483.2 Olea europaea HOM05D005723 ORTHO05D005968 2.6e-100 369.4 318 64.8
QL07p023897 Quercus lobata HOM05D005723 ORTHO05D005968 7.5e-100 367.9 302 63.6
GSVIVG01033492001 Vitis vinifera HOM05D005723 ORTHO05D005968 9.8e-100 367.5 233 74.7
Gohir.D09G124200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.3e-99 367.1 293 66.6
Sc13g0002300 Simmondsia chinensis HOM05D005723 ORTHO05D005968 1.3e-99 367.1 296 66.6
THA.LOC104802583 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 4.8e-99 365.2 305 63.0
Gorai.006G143000 Gossypium raimondii HOM05D005723 ORTHO05D005968 6.3e-99 364.8 294 66.7
Nitab4.5_0000324g0030 Nicotiana tabacum HOM05D005723 ORTHO05D005968 6.3e-99 364.8 200 85.0
THA.LOC104824477 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 1.1e-98 364.0 300 63.7
MD12G1056700 Malus domestica HOM05D005723 ORTHO05D005968 2.4e-98 362.8 232 74.6
TWI53G1132 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 3.1e-98 362.5 304 64.5
CANSAT64G2568 Cannabis sativa HOM05D005723 ORTHO05D005968 9.1e-98 360.9 293 61.8
Lju124A25G33 Lonicera japonica HOM05D005723 ORTHO05D005968 9.1e-98 360.9 207 82.6
FvH4_6g22180 Fragaria vesca HOM05D005723 ORTHO05D005968 2.0e-97 359.8 277 67.1
Aa31LG1G24130 Aethionema arabicum HOM05D005723 ORTHO05D005968 2.7e-97 359.4 295 62.7
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 5.9e-97 358.2 294 63.3
Hund24799 Selenicereus undatus HOM05D005723 ORTHO05D005968 1.0e-96 357.5 253 70.8
TPR.G18229 Trifolium pratense HOM05D005723 ORTHO05D005968 1.3e-96 357.1 207 78.7
EL10Ac3g06909 Beta vulgaris HOM05D005723 ORTHO05D005968 1.7e-96 356.7 293 64.8
Thhalv10017043m.g Eutrema salsugineum HOM05D005723 ORTHO05D005968 2.9e-96 355.9 300 63.0
Nitab4.5_0002488g0020 Nicotiana tabacum HOM05D005723 ORTHO05D005968 3.8e-96 355.5 281 70.1
Rhsim04G0096600 Rhododendron simsii HOM05D005723 ORTHO05D005968 3.8e-96 355.5 281 65.8
Psat3g068400 Pisum sativum HOM05D005723 ORTHO05D005968 5.0e-96 355.1 207 78.3
Lalb_Chr18g0047891 Lupinus albus HOM05D005723 ORTHO05D005968 6.6e-96 354.8 211 76.8
Medtr7g093280 Medicago truncatula HOM05D005723 ORTHO05D005968 6.6e-96 354.8 207 77.8
AL4G40430 Arabidopsis lyrata HOM05D005723 ORTHO05D005968 8.6e-96 354.4 292 62.7
Sed0013306 Sechium edule HOM05D005723 ORTHO05D005968 1.1e-95 354.0 305 60.3
A03p23560 Brassica napus HOM05D005723 ORTHO05D005968 1.5e-95 353.6 296 62.2
Carub.0004s2440 Capsella rubella HOM05D005723 ORTHO05D005968 1.5e-95 353.6 292 63.0
BraA03t11573Z Brassica rapa HOM05D005723 ORTHO05D005968 2.5e-95 352.8 296 62.2
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 2.5e-95 352.8 293 64.2
Atru.chr8.1119 Acer truncatum HOM05D005723 ORTHO05D005968 3.3e-95 352.4 309 58.9
AT2G42070 Arabidopsis thaliana HOM05D005723 ORTHO05D005968 3.3e-95 352.4 291 62.9
Ca_08526_v3 Cicer arietinum L. HOM05D005723 ORTHO05D005968 5.5e-95 351.7 207 77.8
DCAR_019848 Daucus carota HOM05D005723 ORTHO05D005968 5.5e-95 351.7 302 64.9
Lsat_1_v5_gn_5_163580 Lactuca sativa HOM05D005723 ORTHO05D005968 5.5e-95 351.7 301 63.5
FAN05G3703 Fragaria x ananassa HOM05D005723 ORTHO05D005968 7.2e-95 351.3 290 64.1
Lj1g0008741 Lotus japonicus HOM05D005723 ORTHO05D005968 3.6e-94 349.0 211 77.3
BcaB01g03439 Brassica carinata HOM05D005723 ORTHO05D005968 4.7e-94 348.6 291 61.9
Thecc.05G171800 Theobroma cacao HOM05D005723 ORTHO05D005968 1.4e-93 347.1 298 62.4
BcaC01g05310 Brassica carinata HOM05D005723 ORTHO05D005968 2.3e-93 346.3 293 61.4
Phvul.001G142700 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 5.2e-93 345.1 249 66.7
Dinv14303 Davidia involucrata HOM05D005723 ORTHO05D005968 6.8e-93 344.7 258 71.7
BolC3t15179H Brassica oleracea HOM05D005723 ORTHO05D005968 8.9e-93 344.4 293 61.1
VMungo1383G0807 Vigna mungo HOM05D005723 ORTHO05D005968 8.9e-93 344.4 249 66.7
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 1.5e-92 343.6 278 66.5
Nn2g15696 Nelumbo nucifera HOM05D005723 ORTHO05D005968 2.0e-92 343.2 297 59.6
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 3.4e-92 342.4 297 61.3
Glyma.19G148100 Glycine max HOM05D005723 ORTHO05D005968 4.4e-92 342.0 208 76.0
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 7.5e-92 341.3 293 62.1
MELO3C009621.2 Cucumis melo HOM05D005723 ORTHO05D005968 7.5e-92 341.3 306 58.2
Glyma.09G111000 Glycine max HOM05D005723 ORTHO05D005968 3.7e-91 339.0 222 73.9
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 8.3e-91 337.8 210 75.2
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 3.1e-90 335.9 200 77.5
Phvul.007G260200 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 4.1e-90 335.5 213 74.2
PGR142G4063 Punica granatum HOM05D005723 ORTHO05D005968 4.1e-90 335.5 278 61.9
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 1.6e-89 333.6 291 60.5
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 1.6e-89 333.6 291 60.5
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 4.5e-89 332.0 291 60.5
BraA05t19263Z Brassica rapa HOM05D005723 ORTHO05D005968 4.5e-89 332.0 291 59.8
Ciclev10013558m.g Citrus clementina HOM05D005723 ORTHO05D005968 1.3e-88 330.5 230 70.9
Aqoxy1G00026 Aquilegia oxysepala HOM05D005723 ORTHO05D005968 3.9e-88 328.9 198 73.2
Sp4g24280 Schrenkiella parvula HOM05D005723 ORTHO05D005968 5.6e-87 325.1 296 59.1
arahy.Tifrunner.gnm1.ann1.USMU0G Arachis hypogaea HOM05D005723 ORTHO05D005968 4.7e-86 322.0 288 61.5
MD14G1055000 Malus domestica HOM05D005723 ORTHO05D005968 4.9e-83 312.0 278 60.1
Cpa.g.sc85.50 Carica papaya HOM05D005723 ORTHO05D005968 6.4e-83 311.6 297 58.2
CDE05G2791 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 1.9e-82 310.1 295 55.3
ClCG10G017570 Citrullus lanatus HOM05D005723 ORTHO05D005968 1.9e-82 310.1 306 55.6
C03p28100 Brassica napus HOM05D005723 ORTHO05D005968 1.2e-81 307.4 277 60.3
Glyma.03G145000 Glycine max HOM05D005723 ORTHO05D005968 1.2e-81 307.4 191 74.9
MBI08_g23085_MAGBIO Magnolia biondii HOM05D005723 ORTHO05D005968 4.6e-81 305.4 233 63.9
PSO384G0309 Papaver somniferum HOM05D005723 ORTHO05D005968 1.9e-79 300.1 300 53.3
CDE05G1067 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 4.3e-79 298.9 245 59.6
PSO339G0271 Papaver somniferum HOM05D005723 ORTHO05D005968 1.6e-78 297.0 301 52.8
Oeu034265.1 Olea europaea HOM05D005723 ORTHO05D005968 3.1e-77 292.7 155 90.3
Zm00001eb320790 Zea mays HOM05D005723 ORTHO05D005968 4.4e-76 288.9 195 66.7
Zm00001eb104410 Zea mays HOM05D005723 ORTHO05D005968 8.3e-75 284.6 195 66.2
ATR0807G138 Amborella trichopoda HOM05D005723 ORTHO05D005968 1.4e-74 283.9 258 57.8
CsaV3_3G038770 Cucumis sativus L. HOM05D005723 ORTHO05D005968 4.1e-74 282.3 268 57.5
HPP92_009024 Vanilla planifolia HOM05D005723 ORTHO05D005968 2.1e-73 280.0 188 69.1
Pp3c12_9930 Physcomitrium patens HOM05D005723 ORTHO05D005968 3.5e-73 279.3 211 60.7
HanXRQChr01g0009761 Helianthus annuus HOM05D005723 ORTHO05D005968 4.3e-71 272.3 157 78.3
AUR62015361 Chenopodium quinoa HOM05D005723 ORTHO05D005968 9.5e-71 271.2 161 78.9
arahy.Tifrunner.gnm1.ann1.4E6ATU Arachis hypogaea HOM05D005723 ORTHO05D005968 2.8e-70 269.6 269 56.9
ECA248G2266 Erigeron canadensis HOM05D005723 ORTHO05D005968 4.0e-69 265.8 157 77.1
AUR62012024 Chenopodium quinoa HOM05D005723 ORTHO05D005968 5.2e-69 265.4 150 83.3
SMO358G0738 Selaginella moellendorffii HOM05D005723 ORTHO05D005968 3.2e-66 256.1 196 57.7
arahy.Tifrunner.gnm1.ann1.WEU379 Arachis hypogaea HOM05D005723 ORTHO05D005968 8.6e-64 248.1 336 47.3
unitig_748.g7589 Utricularia gibba HOM05D005723 ORTHO05D005968 3.6e-62 242.7 143 79.7
Cre06.g285200 Chlamydomonas reinhardtii HOM05D005723 ORTHO05D005968 2.0e-60 236.9 244 48.0
MSTRG.10844 Avicennia marina HOM05D005723 ORTHO05D005968 9.2e-58 228.0 126 86.5
Actinidia38586 Actinidia chinensis HOM05D005723 ORTHO05D005968 1.0e-56 224.6 293 49.1
TWI74G1261 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 1.3e-54 217.6 272 49.3
Haze_19996 Corylus avellana HOM05D005723 ORTHO05D005968 9.0e-53 211.5 124 80.6
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 1.6e-49 200.7 197 44.7
SEGI_25574 Sequoiadendron giganteum HOM05D005723 ORTHO05D005968 2.7e-49 199.9 138 68.8
Sed0026560 Sechium edule HOM05D005723 ORTHO05D005968 3.3e-47 193.0 211 49.8
Mapoly0013s0082 Marchantia polymorpha HOM05D005723 ORTHO05D005968 1.4e-45 187.6 146 62.3
HPP92_009080 Vanilla planifolia HOM05D005723 ORTHO05D005968 3.4e-44 183.0 110 75.5
arahy.Tifrunner.gnm1.ann1.HLHI9C Arachis hypogaea HOM05D005723 ORTHO05D005968 4.5e-44 182.6 117 75.2
AagrBONN_evm.TU.Sc2ySwM_117.3227 Anthoceros agrestis HOM05D005723 ORTHO05D005968 4.9e-43 179.1 124 62.1
Os09g0553300 Oryza sativa ssp. japonica HOM05D005723 ORTHO05D005968 1.1e-42 177.9 111 71.2
C05p20370 Brassica napus HOM05D005723 ORTHO05D005968 6.9e-37 158.7 115 71.3
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 6.9e-37 158.7 115 71.3
Pp3c3_14150 Physcomitrium patens HOM05D005723 ORTHO05D005968 2.7e-33 146.7 175 46.3
CBR_g29504 Chara braunii HOM05D005723 ORTHO05D005968 6.7e-32 142.1 160 42.5
Gohir.A10G137800 Gossypium hirsutum HOM05D005723 ORTHO05D005968 9.0e-29 131.7 90 74.4
Gohir.A13G075901 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.9e-26 124.0 78 76.9
vmacro09121 Vaccinium macrocarpon HOM05D005723 ORTHO05D005968 1.6e-22 110.9 113 53.1
Haze_19995 Corylus avellana HOM05D005723 ORTHO05D005968 6.9e-21 105.5 103 53.4
BolC3t15180H Brassica oleracea HOM05D005723 ORTHO05D005968 2.6e-20 103.6 95 60.0
MCO15G614 Micromonas commoda HOM05D005723 ORTHO05D005968 1.4e-18 97.8 156 34.0
FAN09G1257 Fragaria x ananassa HOM05D005723 ORTHO05D005968 2.5e-15 87.0 133 45.1
BcaC05g26057 Brassica carinata HOM05D005723 ORTHO05D005968 1.8e-13 80.9 63 63.5
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 5.7e-07 59.3 113 31.9
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.3e-06 58.2 93 35.5
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.7e-06 57.8 93 34.4
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 2.2e-06 57.4 171 27.5
CAN.G85.14 Capsicum annuum HOM05D000829 ORTHO05D000690 2.2e-06 57.4 164 26.2
Solyc12g015700.3 Solanum lycopersicum HOM05D000829 ORTHO05D000690 2.2e-06 57.4 164 25.6
Sopen12g007620 Solanum pennellii HOM05D000829 ORTHO05D000690 2.2e-06 57.4 164 25.6
PGSC0003DMG400029796 Solanum tuberosum HOM05D000829 ORTHO05D000690 2.2e-06 57.4 164 25.6
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 2.8e-06 57.0 93 35.5
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 3.7e-06 56.6 94 35.1
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 4.8e-06 56.2 93 35.5
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 4.8e-06 56.2 93 35.5
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 4.8e-06 56.2 93 35.5
Peaxi162Scf00006g00314 Petunia axillaris HOM05D000829 ORTHO05D000690 6.3e-06 55.8 167 26.3


User provided reference genes

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