Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 2.2e-160 568.9 295 100.0
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 1.1e-111 407.1 303 70.0
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 3.3e-111 405.6 300 70.3
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 7.5e-108 394.4 303 68.3
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 3.0e-104 382.5 303 67.0
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 5.0e-104 381.7 245 76.3
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 6.6e-104 381.3 245 75.9
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 2.1e-102 376.3 296 65.9
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.1e-101 374.0 274 69.3
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.1e-101 374.0 278 70.1
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 4.0e-101 372.1 307 65.8
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 6.8e-101 371.3 292 66.4
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 7.5e-100 367.9 246 74.4
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.3e-99 367.1 276 68.5
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 1.3e-99 367.1 260 69.6
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.3e-99 367.1 258 70.9
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 2.9e-99 365.9 287 65.9
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.9e-99 365.9 244 73.0
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.1e-98 364.0 244 75.0
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.1e-98 364.0 282 68.1
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 2.4e-98 362.8 293 66.2
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 4.1e-98 362.1 242 74.0
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 5.4e-98 361.7 291 64.3
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 9.2e-98 360.9 242 72.7
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 1.6e-97 360.1 284 68.3
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 2.1e-97 359.8 245 73.5
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 2.1e-97 359.8 245 72.2
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.1e-97 359.8 243 74.1
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.1e-97 359.8 243 74.1
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 2.1e-97 359.8 243 74.1
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 2.7e-97 359.4 245 73.5
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.5e-97 359.0 245 72.2
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 3.5e-97 359.0 244 73.8
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 1.0e-96 357.5 290 64.1
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.0e-96 357.5 286 65.4
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.3e-96 357.1 289 64.0
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.7e-96 356.7 287 64.8
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 2.3e-96 356.3 244 73.0
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 2.3e-96 356.3 285 66.0
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 3.9e-96 355.5 244 71.7
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 5.1e-96 355.1 245 72.7
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 5.1e-96 355.1 308 62.3
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 5.1e-96 355.1 308 62.3
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.1e-95 354.0 254 68.9
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.9e-95 353.2 242 71.5
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 2.5e-95 352.8 257 70.8
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 2.5e-95 352.8 253 71.5
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 3.3e-95 352.4 238 74.4
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 3.3e-95 352.4 263 66.9
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 3.3e-95 352.4 294 64.6
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 4.3e-95 352.1 282 64.9
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 9.5e-95 350.9 294 62.9
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 9.5e-95 350.9 250 71.6
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 1.2e-94 350.5 293 62.1
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.6e-94 350.1 248 70.6
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.8e-94 349.4 270 66.3
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.8e-94 349.4 249 71.1
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.6e-94 349.0 248 70.2
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 6.2e-94 348.2 244 72.1
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.1e-93 347.4 262 67.2
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.1e-93 347.4 244 72.5
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 1.4e-93 347.1 244 71.7
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.4e-93 347.1 245 71.0
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.8e-93 346.7 247 70.4
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 3.1e-93 345.9 257 67.7
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 4.0e-93 345.5 247 70.0
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 4.0e-93 345.5 247 70.0
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.0e-93 345.5 257 67.7
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 5.2e-93 345.1 257 67.3
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 5.2e-93 345.1 248 69.4
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 6.8e-93 344.7 244 72.1
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 6.8e-93 344.7 260 68.1
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 8.9e-93 344.4 302 62.3
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.5e-92 343.6 278 62.9
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.5e-92 343.6 299 62.5
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 2.6e-92 342.8 272 64.3
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 2.6e-92 342.8 244 70.9
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 2.6e-92 342.8 293 61.8
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 5.8e-92 341.7 245 69.4
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.8e-92 341.7 243 71.6
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 7.5e-92 341.3 285 62.8
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.3e-91 340.5 312 58.7
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 2.9e-91 339.3 242 71.5
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 3.7e-91 339.0 247 68.4
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 6.4e-91 338.2 286 62.9
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 6.4e-91 338.2 270 63.7
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 6.4e-91 338.2 244 70.5
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.1e-90 337.4 223 73.1
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.1e-90 337.4 242 67.8
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 2.4e-90 336.3 248 68.1
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 4.1e-90 335.5 245 66.9
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 2.1e-89 333.2 222 72.5
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 3.5e-89 332.4 245 66.5
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 4.6e-89 332.0 263 65.8
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 7.8e-89 331.3 292 59.9
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.3e-88 330.5 296 60.1
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.0e-88 329.3 245 66.1
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 3.0e-88 329.3 255 67.1
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 3.0e-88 329.3 305 58.7
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 3.9e-88 328.9 296 59.8
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 1.1e-87 327.4 293 60.4
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 1.1e-87 327.4 293 60.4
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 1.5e-87 327.0 290 60.3
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.9e-87 326.6 295 60.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 1.9e-87 326.6 226 70.8
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.3e-87 325.5 226 70.8
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.6e-87 325.1 280 62.1
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.6e-86 323.6 227 71.4
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 3.6e-86 322.4 291 59.1
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 8.1e-86 321.2 244 66.8
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 3.1e-85 319.3 371 51.5
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 4.0e-85 318.9 260 62.7
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.6e-84 316.2 260 61.9
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 1.1e-82 310.8 241 66.0
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.6e-81 307.0 235 63.8
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.3e-80 303.9 232 67.7
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.0e-80 302.8 258 64.3
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 2.5e-79 299.7 225 64.4
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.3e-79 298.9 239 61.5
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 9.6e-79 297.7 230 67.4
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 1.2e-78 297.4 216 70.4
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 2.8e-78 296.2 246 63.4
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.4e-76 289.3 283 56.9
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.9e-74 283.5 249 59.8
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.2e-74 282.3 315 52.7
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.1e-74 281.6 317 52.7
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.6e-73 278.9 214 66.8
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.0e-72 277.7 272 58.1
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.0e-72 277.7 246 58.9
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 3.0e-72 276.2 252 54.8
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 8.7e-72 274.6 235 57.0
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 2.1e-65 253.4 221 59.7
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 2.6e-60 236.5 208 58.7
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.2e-58 229.6 233 47.6
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 4.2e-58 229.2 233 47.2
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 1.2e-57 227.6 224 54.0
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.3e-56 224.2 167 64.1
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 2.5e-55 219.9 134 81.3
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.7e-54 216.1 383 38.9
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 1.2e-52 211.1 236 44.9
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.0e-51 208.0 135 77.0
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 2.3e-48 196.8 228 43.9
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 8.7e-48 194.9 238 47.9
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 9.7e-47 191.4 134 70.1
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 8.2e-38 161.8 172 47.1
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 5.9e-36 155.6 114 63.2
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.7e-27 127.5 149 47.7
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 7.0e-21 105.5 74 73.0
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 4.5e-20 102.8 107 45.8
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 5.9e-20 102.4 76 68.4
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.5e-15 87.8 224 33.0
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 9.7e-15 85.1 73 58.9
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 4.8e-14 82.8 76 51.3
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 5.9e-12 75.9 60 56.7
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 6.5e-11 72.4 52 71.2
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 3.4e-07 60.1 37 75.7
ECA246G1777 Erigeron canadensis HOM05D002234 ORTHO05D002254 3.7e-06 56.6 217 24.0
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 8.3e-06 55.5 48 62.5


User provided reference genes

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