Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 1.0e-134 483.4 251 100.0
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 6.6e-89 331.3 262 67.6
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 2.1e-79 299.7 260 62.3
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 6.5e-76 288.1 261 61.3
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 2.5e-72 276.2 272 59.6
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 1.2e-66 257.3 238 60.1
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 2.3e-65 253.1 252 58.7
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 3.7e-63 245.7 211 63.5
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 4.8e-63 245.4 226 58.0
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 1.1e-62 244.2 216 60.6
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.4e-62 243.8 195 65.6
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 3.1e-62 242.7 235 55.3
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 4.1e-62 242.3 211 59.2
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 5.3e-62 241.9 244 55.3
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.2e-61 240.7 200 62.5
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 1.2e-61 240.7 169 71.0
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 1.5e-61 240.4 248 56.9
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 2.6e-61 239.6 223 59.2
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 2.6e-61 239.6 195 63.1
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 3.4e-61 239.2 196 64.3
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 4.5e-61 238.8 252 52.8
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 4.5e-61 238.8 245 55.5
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 4.5e-61 238.8 241 56.0
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 5.9e-61 238.4 242 55.4
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 7.7e-61 238.0 241 55.6
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 1.7e-60 236.9 220 57.7
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 2.2e-60 236.5 195 63.6
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 3.8e-60 235.7 213 60.1
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 3.8e-60 235.7 244 55.7
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 5.0e-60 235.3 240 56.7
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 6.5e-60 235.0 219 60.7
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 6.5e-60 235.0 195 63.1
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 6.5e-60 235.0 215 59.1
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 8.5e-60 234.6 246 53.3
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 1.1e-59 234.2 194 61.9
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 1.1e-59 234.2 165 70.9
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 1.4e-59 233.8 204 61.3
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 2.5e-59 233.0 201 61.2
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 2.5e-59 233.0 222 58.1
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 4.2e-59 232.3 231 58.0
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 5.5e-59 231.9 217 57.6
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 7.2e-59 231.5 224 60.3
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 9.4e-59 231.1 224 58.5
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 9.4e-59 231.1 247 55.9
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 9.4e-59 231.1 200 61.0
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 1.2e-58 230.7 227 56.4
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 1.6e-58 230.3 198 61.6
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 2.7e-58 229.6 247 53.0
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 3.6e-58 229.2 198 61.1
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 6.1e-58 228.4 198 61.1
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 7.9e-58 228.0 239 52.7
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 1.0e-57 227.6 251 53.0
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 1.0e-57 227.6 225 56.0
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 1.4e-57 227.3 233 54.1
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.4e-57 227.3 265 50.9
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 2.3e-57 226.5 241 53.5
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 2.3e-57 226.5 224 54.5
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 3.0e-57 226.1 198 61.6
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 3.9e-57 225.7 246 53.3
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 3.9e-57 225.7 191 61.8
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 6.7e-57 224.9 258 51.9
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 8.8e-57 224.6 190 59.5
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 8.8e-57 224.6 195 60.5
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 8.8e-57 224.6 254 54.3
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 1.1e-56 224.2 201 60.7
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 1.1e-56 224.2 240 52.9
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.5e-56 223.8 228 53.9
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.5e-56 223.8 228 53.9
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 2.5e-56 223.0 228 55.7
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 3.3e-56 222.6 235 52.8
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 3.3e-56 222.6 228 54.8
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 4.3e-56 222.2 269 49.4
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 5.7e-56 221.9 243 50.6
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 9.7e-56 221.1 241 52.3
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.3e-55 220.7 163 65.6
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 1.3e-55 220.7 251 52.2
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 1.3e-55 220.7 161 67.7
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 1.7e-55 220.3 202 59.4
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 1.7e-55 220.3 229 53.3
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 4.8e-55 218.8 240 52.9
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 4.8e-55 218.8 161 67.7
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 8.2e-55 218.0 194 59.3
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 1.4e-54 217.2 195 60.5
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.1e-54 216.1 219 54.8
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 4.1e-54 215.7 163 64.4
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 6.9e-54 214.9 203 57.6
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 9.1e-54 214.5 163 63.8
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 9.1e-54 214.5 194 58.8
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 9.1e-54 214.5 156 66.7
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 2.0e-53 213.4 200 57.5
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 4.5e-53 212.2 158 66.5
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.0e-49 201.1 163 61.3
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 1.8e-49 200.3 161 60.2
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.5e-48 197.2 153 68.0
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 2.6e-48 196.4 156 63.5
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 2.8e-47 193.0 247 47.4
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 1.1e-46 191.0 200 52.0
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 3.1e-46 189.5 249 47.4
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 4.2e-43 179.1 163 55.8
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 4.2e-43 179.1 162 55.6
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.1e-40 171.0 156 55.8
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.1e-40 171.0 156 55.8
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 2.0e-37 160.2 235 45.1
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 3.2e-35 152.9 156 47.4
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 5.5e-35 152.1 184 46.2
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 9.4e-35 151.4 154 51.3
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 1.0e-33 147.9 156 53.2
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 2.2e-31 140.2 196 41.8
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 2.4e-30 136.7 162 45.7
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 7.0e-30 135.2 135 51.9
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.7e-28 130.6 247 39.7
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 5.0e-28 129.0 92 66.3
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.9e-27 127.1 200 41.5
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 2.1e-26 123.6 88 65.9
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.2e-24 117.9 83 68.7
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 3.4e-24 116.3 83 68.7
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 4.9e-23 112.5 159 37.1
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 1.4e-22 110.9 156 46.2
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 4.5e-21 105.9 81 60.5
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 7.7e-21 105.1 75 62.7
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 7.7e-21 105.1 130 45.4
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 3.8e-20 102.8 81 59.3
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 4.3e-19 99.4 91 56.0
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 3.0e-17 93.2 69 60.9
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 8.3e-15 85.1 128 38.3
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 1.1e-14 84.7 89 50.6
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 4.3e-11 72.8 106 43.4
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-10 71.2 88 42.0
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 8.9e-09 65.1 94 42.6
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 4.4e-08 62.8 126 34.9
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 7.5e-08 62.0 92 39.1
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 3.7e-07 59.7 188 25.5
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 4.9e-07 59.3 188 25.5


User provided reference genes

Program Settings