Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold273G46421 Striga asiatica HOM05D002223 ORTHO05D009240 4.3e-50 201.1 103 100.0
SGA_v2.0_scaffold67G22620 Striga asiatica HOM05D002223 ORTHO05D009240 1.5e-42 176.0 101 91.1
MSTRG.3904 Avicennia marina HOM05D002223 ORTHO05D009240 1.7e-22 109.4 97 61.9
Sopen01g028350 Solanum pennellii HOM05D002223 ORTHO05D009240 6.6e-19 97.4 105 49.5
Nitab4.5_0002761g0080 Nicotiana tabacum HOM05D002223 ORTHO05D009240 8.7e-19 97.1 94 54.3
Nitab4.5_0005362g0050 Nicotiana tabacum HOM05D002223 ORTHO05D009240 8.7e-19 97.1 94 54.3
Solyc01g066740.3 Solanum lycopersicum HOM05D002223 ORTHO05D009240 8.7e-19 97.1 106 50.0
PGSC0003DMG400011337 Solanum tuberosum HOM05D002223 ORTHO05D009240 1.1e-18 96.7 106 50.0
DCAR_030519 Daucus carota HOM05D000739 ORTHO05D009240 1.5e-18 96.3 93 54.8
Peaxi162Scf00246g01011 Petunia axillaris HOM05D002223 ORTHO05D009240 1.9e-18 95.9 94 54.3
Lj3C821T14 Lonicera japonica HOM05D002223 ORTHO05D009240 4.3e-18 94.7 87 56.3
unitig_0.g2592 Utricularia gibba HOM05D002223 ORTHO05D009240 5.6e-18 94.4 99 50.5
Cc03_g01750 Coffea canephora HOM05D002223 ORTHO05D009240 9.6e-18 93.6 101 51.5
MSTRG.10102 Avicennia marina HOM05D002223 ORTHO05D009240 1.6e-17 92.8 101 53.5
Dinv44365 Davidia involucrata HOM05D002223 ORTHO05D009240 2.1e-17 92.4 84 56.0
Lsat_1_v5_gn_6_95461 Lactuca sativa HOM05D002223 ORTHO05D009240 3.6e-17 91.7 94 52.1
SalBow2G1527 Salvia bowleyana HOM05D002223 ORTHO05D009240 3.6e-17 91.7 96 50.0
Potri.008G220800 Populus trichocarpa HOM05D002223 ORTHO05D009240 4.8e-17 91.3 83 56.6
Manes.03G196800 Manihot esculenta HOM05D002223 ORTHO05D009240 6.2e-17 90.9 85 54.1
QL06p009618 Quercus lobata HOM05D002223 ORTHO05D009240 8.1e-17 90.5 84 54.8
ECA240G2883 Erigeron canadensis HOM05D002223 ORTHO05D009240 3.1e-16 88.6 89 55.1
Sabra08G0152200 Salix brachista HOM05D002223 ORTHO05D009240 1.2e-15 86.7 85 55.3
Rhsim04G0223900 Rhododendron simsii HOM05D002223 ORTHO05D009240 1.5e-15 86.3 84 54.8
HanXRQChr03g0089381 Helianthus annuus HOM05D002223 ORTHO05D009240 2.6e-15 85.5 100 47.0
ClCG05G006180 Citrullus lanatus HOM05D002223 ORTHO05D009240 4.4e-15 84.7 84 44.0
Thecc.04G286500 Theobroma cacao HOM05D002223 ORTHO05D009240 4.4e-15 84.7 84 47.6
CSS0017724 Camellia sinensis var. sinensis HOM05D002223 ORTHO05D009240 5.8e-15 84.3 84 54.8
CSS0047449 Camellia sinensis var. sinensis HOM05D002223 ORTHO05D009240 5.8e-15 84.3 84 54.8
Sed0005735 Sechium edule HOM05D002223 ORTHO05D009240 5.8e-15 84.3 84 47.6
Ciclev10004156m.g Citrus clementina HOM05D002223 ORTHO05D009240 9.9e-15 83.6 97 44.3
MELO3C006674.2 Cucumis melo HOM05D002223 ORTHO05D009240 1.7e-14 82.8 84 44.0
CsaV3_3G014780 Cucumis sativus L. HOM05D002223 ORTHO05D009240 1.7e-14 82.8 84 44.0
PGR031G3412 Punica granatum HOM05D002223 ORTHO05D009240 2.2e-14 82.4 84 50.0
vmacro08164 Vaccinium macrocarpon HOM05D002223 ORTHO05D009240 2.2e-14 82.4 84 48.8
Cpa.g.sc16.187 Carica papaya HOM05D002223 ORTHO05D009240 2.9e-14 82.0 107 45.8
COL.COLO4_13846 Corchorus olitorius HOM05D002223 ORTHO05D009240 2.9e-14 82.0 84 46.4
Actinidia01479 Actinidia chinensis HOM05D002223 ORTHO05D009240 4.9e-14 81.3 84 52.4
TWI73G0234 Tripterygium wilfordii HOM05D002223 ORTHO05D009240 4.9e-14 81.3 85 48.2
Gohir.A09G238200 Gossypium hirsutum HOM05D002223 ORTHO05D009240 6.4e-14 80.9 84 45.2
Gorai.006G261800 Gossypium raimondii HOM05D002223 ORTHO05D009240 6.4e-14 80.9 84 45.2
Duzib151G0217 Durio zibethinus HOM05D002223 ORTHO05D009240 1.1e-13 80.1 84 46.4
Haze_01186 Corylus avellana HOM05D002223 ORTHO05D009240 1.4e-13 79.7 84 48.8
Gohir.D09G239100 Gossypium hirsutum HOM05D002223 ORTHO05D009240 1.9e-13 79.3 84 44.0
TAR365G0652 Trochodendron aralioides HOM05D002223 ORTHO05D009240 2.4e-13 79.0 81 49.4
Eucgr.B01598 Eucalyptus grandis HOM05D002223 ORTHO05D009240 4.2e-13 78.2 83 45.8
HanXRQChr13g0419991 Helianthus annuus HOM05D002223 ORTHO05D009240 5.4e-13 77.8 109 42.2
GSVIVG01035145001 Vitis vinifera HOM05D002223 ORTHO05D009240 5.4e-13 77.8 83 49.4
CiPaw.02G082000 Carya illinoinensis HOM05D002223 ORTHO05D009240 1.6e-12 76.3 84 46.4
Glyma.09G043900 Glycine max HOM05D002223 ORTHO05D009240 1.3e-11 73.2 100 42.0
Migut.G00147 Erythranthe guttata HOM05D002223 ORTHO05D009240 1.7e-11 72.8 63 58.7
Phvul.009G249000 Phaseolus vulgaris HOM05D002223 ORTHO05D009240 1.7e-11 72.8 100 42.0
arahy.Tifrunner.gnm1.ann1.T7S33K Arachis hypogaea HOM05D002223 ORTHO05D009240 3.0e-11 72.0 95 43.2
Glyma.15G149200 Glycine max HOM05D002223 ORTHO05D009240 3.9e-11 71.6 100 41.0
Sp3g05840 Schrenkiella parvula HOM05D002223 ORTHO05D009240 3.9e-11 71.6 107 41.1
Prupe.1G134400 Prunus persica HOM05D002223 ORTHO05D009240 5.1e-11 71.2 84 46.4
VMungo1309G2664 Vigna mungo HOM05D002223 ORTHO05D009240 5.1e-11 71.2 101 42.6
arahy.Tifrunner.gnm1.ann1.2I8LVJ Arachis hypogaea HOM05D002223 ORTHO05D009240 6.6e-11 70.9 95 42.1
MBI18_g06876_MAGBIO Magnolia biondii HOM05D002223 ORTHO05D009240 6.6e-11 70.9 80 46.2
Lalb_Chr15g0083471 Lupinus albus HOM05D002223 ORTHO05D009240 1.9e-10 69.3 91 41.8
FvH4_4g18342 Fragaria vesca HOM05D002223 ORTHO05D009240 2.5e-10 68.9 111 39.6
FAN07G0535 Fragaria x ananassa HOM05D002223 ORTHO05D009240 2.5e-10 68.9 111 39.6
FAN17G0767 Fragaria x ananassa HOM05D002223 ORTHO05D009240 2.5e-10 68.9 111 37.8
Aqoxy2G02948 Aquilegia oxysepala HOM05D002223 ORTHO05D009240 7.3e-10 67.4 104 41.3
Thhalv10019914m.g Eutrema salsugineum HOM05D002223 ORTHO05D009240 7.3e-10 67.4 95 38.9
RcHm_v2.0_Chr4g0422831 Rosa chinensis HOM05D002223 ORTHO05D009240 9.6e-10 67.0 85 44.7
MD13G1167100 Malus domestica HOM05D002223 ORTHO05D009240 1.3e-09 66.6 99 38.4
C03p42520 Brassica napus HOM05D002223 ORTHO05D009240 1.6e-09 66.2 78 43.6
BolC3t16522H Brassica oleracea HOM05D002223 ORTHO05D009240 1.6e-09 66.2 78 43.6
Medtr2g436530 Medicago truncatula HOM05D002223 ORTHO05D009240 1.6e-09 66.2 66 50.0
AT3G06880 Arabidopsis thaliana HOM05D002223 ORTHO05D009240 2.1e-09 65.9 78 43.6
A03p34940 Brassica napus HOM05D002223 ORTHO05D009240 2.1e-09 65.9 78 43.6
BraA03t12674Z Brassica rapa HOM05D002223 ORTHO05D009240 2.1e-09 65.9 78 43.6
Carub.0003s0641 Capsella rubella HOM05D002223 ORTHO05D009240 2.1e-09 65.9 78 43.6
CARHR081500 Cardamine hirsuta HOM05D002223 ORTHO05D009240 2.1e-09 65.9 78 43.6
AL3G18010 Arabidopsis lyrata HOM05D002223 ORTHO05D009240 8.1e-09 63.9 78 42.3
Psat1g155000 Pisum sativum HOM05D002223 ORTHO05D009240 5.3e-08 61.2 66 47.0
Aa31LG5G17470 Aethionema arabicum HOM05D002223 ORTHO05D009240 9.0e-08 60.5 99 37.4
Ca_01926_v3 Cicer arietinum L. HOM05D002223 ORTHO05D009240 9.9e-07 57.0 67 49.3


User provided reference genes

Program Settings