Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 4.2e-162 574.7 308 100.0
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 4.5e-148 528.1 306 92.2
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 2.3e-144 515.8 323 87.9
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 9.8e-143 510.4 351 80.3
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 1.9e-138 496.1 311 87.1
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 1.9e-138 496.1 310 85.2
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 6.8e-136 487.6 308 85.1
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 6.8e-136 487.6 308 85.1
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 6.8e-136 487.6 308 85.1
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 3.4e-135 485.3 308 84.4
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 5.8e-135 484.6 305 85.9
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 2.2e-134 482.6 308 85.7
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 2.9e-134 482.3 308 85.1
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 4.9e-134 481.5 308 83.4
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 6.4e-134 481.1 305 85.6
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 8.3e-134 480.7 304 83.9
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.6e-132 476.5 308 83.4
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 7.8e-132 474.2 301 84.4
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 2.3e-131 472.6 306 83.3
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.0e-131 472.2 289 84.8
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.0e-131 472.2 289 84.8
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 6.6e-131 471.1 287 86.1
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 8.6e-131 470.7 289 84.4
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 1.5e-130 469.9 303 83.8
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 1.5e-130 469.9 290 85.5
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 1.5e-130 469.9 290 84.1
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 3.3e-130 468.8 289 84.4
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.6e-129 466.5 303 82.5
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 2.8e-129 465.7 302 82.8
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 2.8e-129 465.7 302 82.8
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 2.8e-129 465.7 291 85.2
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 3.6e-129 465.3 280 87.1
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 3.6e-129 465.3 308 82.1
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 6.2e-129 464.5 308 80.2
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.1e-128 463.8 316 80.4
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 4.0e-128 461.8 308 79.5
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 6.8e-128 461.1 308 79.5
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 8.9e-128 460.7 308 79.9
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 2.6e-127 459.1 308 79.2
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 3.4e-127 458.8 286 83.9
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 5.8e-127 458.0 308 79.5
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 5.8e-127 458.0 287 83.6
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 7.5e-127 457.6 308 80.2
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 4.9e-126 454.9 287 83.3
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 6.4e-126 454.5 287 83.3
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 9.2e-125 450.7 295 79.3
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 7.8e-124 447.6 301 79.1
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 1.7e-123 446.4 297 79.1
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.3e-123 446.0 265 87.2
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 3.9e-123 445.3 301 78.4
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.1e-123 444.9 266 86.8
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.1e-122 443.7 268 85.8
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.3e-122 442.2 265 86.4
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 4.3e-122 441.8 282 82.3
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 4.3e-122 441.8 283 81.6
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 9.5e-122 440.7 284 81.3
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 2.1e-121 439.5 301 77.7
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 2.8e-121 439.1 296 77.7
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 4.7e-121 438.3 285 80.7
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 6.2e-121 438.0 291 79.0
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 8.1e-121 437.6 301 77.7
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 8.1e-121 437.6 290 78.6
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.1e-120 437.2 290 79.0
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.1e-120 437.2 301 77.7
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 4.0e-120 435.3 301 77.4
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 5.2e-120 434.9 282 81.2
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 6.8e-120 434.5 282 81.2
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.2e-119 433.7 301 77.1
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 1.5e-119 433.3 287 78.7
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.5e-119 433.3 308 75.0
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 2.0e-119 433.0 283 80.2
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 3.4e-119 432.2 290 77.6
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 3.4e-119 432.2 290 77.6
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 3.4e-119 432.2 294 77.2
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 1.7e-118 429.9 290 77.2
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 2.2e-118 429.5 288 77.8
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 2.9e-118 429.1 286 78.0
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 3.8e-118 428.7 286 78.7
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 4.9e-118 428.3 289 77.2
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 4.9e-118 428.3 291 79.0
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 6.4e-118 427.9 276 80.4
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 8.4e-118 427.6 291 77.3
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.1e-117 427.2 300 74.7
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 1.1e-117 427.2 293 76.5
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 2.4e-117 426.0 281 78.6
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 2.4e-117 426.0 294 78.2
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 4.1e-117 425.2 291 77.0
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 4.1e-117 425.2 323 71.2
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 4.1e-117 425.2 290 76.6
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 9.2e-117 424.1 280 78.9
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 9.2e-117 424.1 290 75.9
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.2e-116 423.7 286 76.9
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 1.6e-116 423.3 323 71.2
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 1.6e-116 423.3 276 80.1
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.7e-116 422.5 266 84.6
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 4.6e-116 421.8 283 77.7
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 4.6e-116 421.8 290 75.5
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.0e-115 420.6 286 77.3
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 1.0e-115 420.6 337 69.7
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 1.3e-115 420.2 283 77.4
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 1.7e-115 419.9 308 78.2
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.7e-115 419.9 308 76.6
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 5.1e-115 418.3 272 79.0
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 6.6e-115 417.9 306 76.5
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 1.5e-114 416.8 298 74.5
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.5e-114 416.8 308 76.0
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 2.5e-114 416.0 292 74.3
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.5e-114 416.0 292 74.3
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 9.6e-114 414.1 282 77.0
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 1.6e-113 413.3 296 73.6
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.1e-113 412.9 292 74.0
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.6e-113 412.1 284 78.5
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 4.7e-113 411.8 287 76.0
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 5.8e-111 404.8 290 72.4
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.9e-110 402.5 265 82.3
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 4.2e-109 398.7 292 69.9
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.6e-108 396.7 276 75.0
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 3.5e-108 395.6 283 73.5
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.0e-107 392.5 233 85.4
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 4.3e-106 388.7 246 82.1
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 5.6e-106 388.3 291 70.4
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 1.6e-105 386.7 351 62.7
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 2.8e-105 386.0 301 68.4
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 2.8e-105 386.0 291 69.1
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 1.2e-103 380.6 289 70.6
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 2.6e-103 379.4 281 70.5
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 1.1e-98 364.0 276 66.7
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 1.3e-97 360.5 280 66.1
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 2.0e-95 353.2 212 87.7
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 5.6e-90 335.1 292 65.4
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 1.3e-86 323.9 276 59.4
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 3.9e-83 312.4 221 74.2
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 6.7e-83 311.6 309 57.6
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 3.7e-81 305.8 267 65.2
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 2.5e-77 293.1 274 55.1
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 3.6e-76 289.3 198 72.7
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.8e-75 287.0 215 68.4
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 2.4e-72 276.6 163 87.1
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 5.9e-71 271.9 252 60.3
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 2.5e-69 266.5 276 55.1
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 9.4e-69 264.6 191 77.5
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 6.1e-60 235.3 163 77.3
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 1.8e-59 233.8 244 49.2
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 5.7e-42 175.6 169 62.1
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 2.2e-41 173.7 178 56.2
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 2.2e-41 173.7 178 56.2
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 1.9e-37 160.6 107 72.9
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 1.9e-37 160.6 107 72.9
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 2.1e-36 157.1 153 61.4
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 1.4e-32 144.4 96 76.0
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 3.5e-31 139.8 96 78.1
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 5.0e-30 136.0 81 84.0
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 2.2e-25 120.6 85 74.1
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 3.0e-22 110.2 85 64.7
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 9.5e-21 105.1 86 68.6
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 5.4e-16 89.4 77 59.7
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 7.0e-16 89.0 77 57.1
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 3.5e-15 86.7 58 75.9
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 8.6e-14 82.0 52 82.7
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 1.5e-13 81.3 77 57.1
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 1.9e-13 80.9 82 51.2
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 3.3e-13 80.1 85 49.4
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.8e-12 77.0 70 67.1
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 3.6e-12 76.6 68 60.3
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.4e-11 74.7 60 58.3
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 1.4e-11 74.7 68 60.3
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 2.2e-09 67.4 93 41.9
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 3.2e-08 63.5 40 75.0
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 2.1e-07 60.8 39 74.4
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 2.1e-07 60.8 39 74.4


User provided reference genes

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