Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold26G11340 Striga asiatica HOM05D054064 ORTHO05D007653 5.3e-215 750.7 376 100.0
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 2.5e-68 263.5 150 92.0
SGA_v2.0_scaffold90G27700 Striga asiatica HOM05D054064 ORTHO05D007653 2.2e-51 207.2 107 100.0
SGA_v2.0_scaffold21G09456 Striga asiatica HOM05D002422 ORTHO05D002569 7.0e-50 202.2 149 76.5
Migut.L01538 Erythranthe guttata HOM05D002422 ORTHO05D002569 1.1e-10 72.0 144 46.5
DCAR_022521 Daucus carota HOM05D000186 ORTHO05D001471 2.7e-09 67.4 85 44.7
SGA_v2.0_scaffold70G23528 Striga asiatica HOM05D000186 ORTHO05D001471 4.6e-09 66.6 89 43.8
MSTRG.6889 Avicennia marina HOM05D000186 ORTHO05D001471 1.0e-08 65.5 89 43.8
Migut.M01813 Erythranthe guttata HOM05D000186 ORTHO05D001471 1.0e-08 65.5 89 42.7
TWI38G1930 Tripterygium wilfordii HOM05D000186 ORTHO05D001471 1.0e-08 65.5 102 40.2
Nitab4.5_0002342g0100 Nicotiana tabacum HOM05D000186 ORTHO05D001471 1.3e-08 65.1 84 42.9
Lsat_1_v5_gn_7_108301 Lactuca sativa HOM05D000186 ORTHO05D001471 1.7e-08 64.7 96 40.6
Medtr2g082650 Medicago truncatula HOM05D000186 ORTHO05D001471 1.7e-08 64.7 72 45.8
Nitab4.5_0002229g0130 Nicotiana tabacum HOM05D000186 ORTHO05D001471 1.7e-08 64.7 84 42.9
Psat5g249800 Pisum sativum HOM05D000186 ORTHO05D001471 1.7e-08 64.7 72 45.8
TPR.G36722 Trifolium pratense HOM05D000186 ORTHO05D001471 1.7e-08 64.7 72 45.8
MSTRG.12954 Avicennia marina HOM05D000186 ORTHO05D001471 2.3e-08 64.3 75 44.0
CAN.G1110.11 Capsicum annuum HOM05D000186 ORTHO05D001471 2.3e-08 64.3 86 41.9
Ca_01756_v3 Cicer arietinum L. HOM05D000186 ORTHO05D001471 2.3e-08 64.3 72 45.8
Ca_01762_v3 Cicer arietinum L. HOM05D000186 ORTHO05D001471 2.3e-08 64.3 72 45.8
Lj8A165T110 Lonicera japonica HOM05D000186 ORTHO05D001471 2.3e-08 64.3 86 41.9
Solyc10g006500.4 Solanum lycopersicum HOM05D000186 ORTHO05D001471 2.3e-08 64.3 86 41.9
Sopen10g002450 Solanum pennellii HOM05D000186 ORTHO05D001471 2.3e-08 64.3 86 41.9
PGSC0003DMG400014401 Solanum tuberosum HOM05D000186 ORTHO05D001471 2.3e-08 64.3 86 41.9
HPP92_001788 Vanilla planifolia HOM05D000186 ORTHO05D001471 2.3e-08 64.3 89 41.6
Cpa.g.sc97.76 Carica papaya HOM05D000186 ORTHO05D001471 3.0e-08 63.9 102 38.2
Migut.H01860 Erythranthe guttata HOM05D000186 ORTHO05D001471 3.0e-08 63.9 75 44.0
HanXRQChr11g0333061 Helianthus annuus HOM05D000186 ORTHO05D001471 3.0e-08 63.9 96 40.6
Nitab4.5_0000397g0090 Nicotiana tabacum HOM05D000186 ORTHO05D001471 3.0e-08 63.9 86 41.9
Peaxi162Scf01086g00153 Petunia axillaris HOM05D000186 ORTHO05D001471 3.0e-08 63.9 86 41.9
Solyc07g064050.3 Solanum lycopersicum HOM05D000186 ORTHO05D001471 3.0e-08 63.9 86 41.9
PGSC0003DMG400019228 Solanum tuberosum HOM05D000186 ORTHO05D001471 3.0e-08 63.9 86 41.9
TWI39G0901 Tripterygium wilfordii HOM05D000186 ORTHO05D001471 3.0e-08 63.9 72 45.8
Eucgr.F00995 Eucalyptus grandis HOM05D000186 ORTHO05D001471 3.9e-08 63.5 102 38.2
Glyma.12G136100 Glycine max HOM05D000186 ORTHO05D001471 3.9e-08 63.5 72 44.4
Hma1.2p1_1054F.1_g252440 Hydrangea macrophylla HOM05D000186 ORTHO05D001471 3.9e-08 63.5 72 45.8
PSO675G4811 Papaver somniferum HOM05D000186 ORTHO05D001471 3.9e-08 63.5 86 41.9
Sopen07g032190 Solanum pennellii HOM05D000186 ORTHO05D001471 3.9e-08 63.5 86 40.7
TAR624G1236 Trochodendron aralioides HOM05D000186 ORTHO05D001471 3.9e-08 63.5 86 41.9
VMungo1127G0140 Vigna mungo HOM05D000186 ORTHO05D001471 3.9e-08 63.5 72 44.4
Actinidia05125 Actinidia chinensis HOM05D000186 ORTHO05D001471 5.1e-08 63.2 86 41.9
Actinidia09960 Actinidia chinensis HOM05D000186 ORTHO05D001471 5.1e-08 63.2 86 41.9
Aqoxy4G02097 Aquilegia oxysepala HOM05D000186 ORTHO05D001471 5.1e-08 63.2 102 39.2
Aqoxy4G02102 Aquilegia oxysepala HOM05D000186 ORTHO05D001471 5.1e-08 63.2 102 39.2
CAN.G337.153 Capsicum annuum HOM05D000186 ORTHO05D001471 5.1e-08 63.2 89 40.4
ECA236G1681 Erigeron canadensis HOM05D000186 ORTHO05D001471 5.1e-08 63.2 86 41.9
Glyma.13G286900 Glycine max HOM05D000186 ORTHO05D001471 5.1e-08 63.2 72 44.4
Nn1g06994 Nelumbo nucifera HOM05D000186 ORTHO05D001471 5.1e-08 63.2 86 41.9
Nitab4.5_0002238g0090 Nicotiana tabacum HOM05D000186 ORTHO05D001471 5.1e-08 63.2 85 42.4
Phvul.011G141200 Phaseolus vulgaris HOM05D000186 ORTHO05D001471 5.1e-08 63.2 72 44.4
Thecc.07G054700 Theobroma cacao HOM05D000186 ORTHO05D001471 5.1e-08 63.2 102 38.2
TAR627G0150 Trochodendron aralioides HOM05D000186 ORTHO05D001471 5.1e-08 63.2 102 38.2
BcaC01g06319 Brassica carinata HOM05D000186 ORTHO05D001471 6.6e-08 62.8 71 45.1
CSS0014858 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D001471 6.6e-08 62.8 86 40.7
CSS0046130 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D001471 6.6e-08 62.8 86 40.7
FvH4_3g21730 Fragaria vesca HOM05D000186 ORTHO05D001471 6.6e-08 62.8 86 41.9
FAN11G0547 Fragaria x ananassa HOM05D000186 ORTHO05D001471 6.6e-08 62.8 86 41.9
FAN16G1377 Fragaria x ananassa HOM05D000186 ORTHO05D001471 6.6e-08 62.8 86 41.9
FAN21G2058 Fragaria x ananassa HOM05D000186 ORTHO05D001471 6.6e-08 62.8 86 41.9
FAN25G3639 Fragaria x ananassa HOM05D000186 ORTHO05D001471 6.6e-08 62.8 86 41.9
Lalb_Chr22g0357061 Lupinus albus HOM05D000186 ORTHO05D001471 6.6e-08 62.8 72 44.4
PSO541G0503 Papaver somniferum HOM05D000186 ORTHO05D001471 6.6e-08 62.8 86 41.9
arahy.Tifrunner.gnm1.ann1.2YPY17 Arachis hypogaea HOM05D000186 ORTHO05D001471 8.6e-08 62.4 72 44.4
arahy.Tifrunner.gnm1.ann1.XZZ787 Arachis hypogaea HOM05D000186 ORTHO05D001471 8.6e-08 62.4 72 44.4
AUR62015638 Chenopodium quinoa HOM05D000186 ORTHO05D001471 8.6e-08 62.4 86 40.7
AUR62029233 Chenopodium quinoa HOM05D000186 ORTHO05D001471 8.6e-08 62.4 86 40.7
Ciclev10007975m.g Citrus clementina HOM05D000186 ORTHO05D001471 8.6e-08 62.4 86 40.7
Duzib268G1543 Durio zibethinus HOM05D000186 ORTHO05D001471 8.6e-08 62.4 102 37.3
MSTRG.19483 Avicennia marina HOM05D002422 ORTHO05D002569 1.1e-07 62.0 197 31.5
Cfa020432 Carpinus fangiana HOM05D000186 ORTHO05D001471 1.1e-07 62.0 102 38.2
Haze_09596 Corylus avellana HOM05D000186 ORTHO05D001471 1.1e-07 62.0 102 38.2
Duzib213G0280 Durio zibethinus HOM05D000186 ORTHO05D001471 1.1e-07 62.0 102 37.3
Glyma.06G266900 Glycine max HOM05D000186 ORTHO05D001471 1.1e-07 62.0 72 43.1
Manes.03G122300 Manihot esculenta HOM05D000186 ORTHO05D001471 1.1e-07 62.0 72 43.1
GSVIVG01014592001 Vitis vinifera HOM05D000186 ORTHO05D001471 1.1e-07 62.0 86 40.7
CAN.G148.12 Capsicum annuum HOM05D002422 ORTHO05D002569 1.5e-07 61.6 138 33.3
Cc05_g13200 Coffea canephora HOM05D000186 ORTHO05D001471 1.5e-07 61.6 86 39.5
COL.COLO4_09560 Corchorus olitorius HOM05D000186 ORTHO05D001471 1.5e-07 61.6 102 37.3
MD03G1212400 Malus domestica HOM05D000186 ORTHO05D001471 1.5e-07 61.6 102 37.3
Peaxi162Scf00724g00037 Petunia axillaris HOM05D002422 ORTHO05D002569 1.5e-07 61.6 121 36.4
Phvul.005G091200 Phaseolus vulgaris HOM05D000186 ORTHO05D001471 1.5e-07 61.6 72 43.1
SalBow7G0475 Salvia bowleyana HOM05D000186 ORTHO05D001471 1.5e-07 61.6 75 42.7
THA.LOC104813410 Tarenaya hassleriana HOM05D000186 ORTHO05D001471 1.5e-07 61.6 71 45.1
unitig_0.g2382 Utricularia gibba HOM05D000186 ORTHO05D001471 1.5e-07 61.6 75 44.0
Glyma.12G214700 Glycine max HOM05D000186 ORTHO05D001471 1.9e-07 61.2 72 45.8
Gohir.D13G146200 Gossypium hirsutum HOM05D000186 ORTHO05D001471 1.9e-07 61.2 102 39.2
Peaxi162Scf01434g00015 Petunia axillaris HOM05D000186 ORTHO05D001471 1.9e-07 61.2 86 40.7
Hund02139 Selenicereus undatus HOM05D000186 ORTHO05D001471 1.9e-07 61.2 102 36.3
Lj3g0016615 Lotus japonicus HOM05D000186 ORTHO05D001471 2.5e-07 60.8 72 43.1
Nn1g03669 Nelumbo nucifera HOM05D000186 ORTHO05D001471 2.5e-07 60.8 86 40.7
AL8G30140 Arabidopsis lyrata HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
AT5G54690 Arabidopsis thaliana HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
BcaB01g04311 Brassica carinata HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
BcaB08g35830 Brassica carinata HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
BcaC03g14296 Brassica carinata HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
BcaC04g20311 Brassica carinata HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
A02p10090 Brassica napus HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
A10p11980 Brassica napus HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
C02p16740 Brassica napus HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
C09p45090 Brassica napus HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
BolC2t07779H Brassica oleracea HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
BolC9t57384H Brassica oleracea HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
BraA02t06078Z Brassica rapa HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
BraA10t43294Z Brassica rapa HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
Carub.0008s1495 Capsella rubella HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
CARHR268000 Cardamine hirsuta HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
Thhalv10013202m.g Eutrema salsugineum HOM05D000186 ORTHO05D001471 3.3e-07 60.5 85 41.2
Lalb_Chr01g0006111 Lupinus albus HOM05D000186 ORTHO05D001471 3.3e-07 60.5 72 41.7
Manes.15G076900 Manihot esculenta HOM05D000186 ORTHO05D001471 3.3e-07 60.5 102 38.2
Prupe.4G201700 Prunus persica HOM05D000186 ORTHO05D001471 3.3e-07 60.5 102 37.3
Sed0026351 Sechium edule HOM05D000186 ORTHO05D001471 3.3e-07 60.5 102 36.3
vmacro11769 Vaccinium macrocarpon HOM05D000186 ORTHO05D001471 3.3e-07 60.5 102 37.3
Atru.chr2.3196 Acer truncatum HOM05D000186 ORTHO05D001471 4.3e-07 60.1 102 36.3
CiPaw.11G183300 Carya illinoinensis HOM05D000186 ORTHO05D001471 4.3e-07 60.1 102 37.3
ClCG10G005760 Citrullus lanatus HOM05D000186 ORTHO05D001471 4.3e-07 60.1 102 36.3
MELO3C025427.2 Cucumis melo HOM05D000186 ORTHO05D001471 4.3e-07 60.1 102 36.3
CsaV3_3G005450 Cucumis sativus L. HOM05D000186 ORTHO05D001471 4.3e-07 60.1 102 36.3
Gohir.A01G074200 Gossypium hirsutum HOM05D000186 ORTHO05D001471 4.3e-07 60.1 72 44.4
Gohir.D01G060700 Gossypium hirsutum HOM05D000186 ORTHO05D001471 4.3e-07 60.1 72 44.4
Gorai.002G082100 Gossypium raimondii HOM05D000186 ORTHO05D001471 4.3e-07 60.1 72 44.4
HanXRQChr13g0407661 Helianthus annuus HOM05D000186 ORTHO05D001471 4.3e-07 60.1 101 36.6
RcHm_v2.0_Chr5g0037221 Rosa chinensis HOM05D000186 ORTHO05D001471 4.3e-07 60.1 72 41.7
Sabra16G0283300 Salix brachista HOM05D000186 ORTHO05D001471 4.3e-07 60.1 72 41.7
Atru.chr2.3186 Acer truncatum HOM05D000186 ORTHO05D001471 5.6e-07 59.7 102 36.3
AagrBONN_evm.TU.Sc2ySwM_117.2764 Anthoceros agrestis HOM05D000186 ORTHO05D001471 5.6e-07 59.7 71 42.3
MD11G1227600 Malus domestica HOM05D000186 ORTHO05D001471 5.6e-07 59.7 102 36.3
VMungo1080G0368 Vigna mungo HOM05D000186 ORTHO05D001471 5.6e-07 59.7 72 43.1
ATR0073G003 Amborella trichopoda HOM05D000186 ORTHO05D001471 7.3e-07 59.3 85 41.2
CANSAT11G1243 Cannabis sativa HOM05D000186 ORTHO05D001471 7.3e-07 59.3 102 35.3
Lj3g0006879 Lotus japonicus HOM05D000186 ORTHO05D001471 7.3e-07 59.3 72 43.1
Nitab4.5_0001488g0110 Nicotiana tabacum HOM05D002422 ORTHO05D002569 7.3e-07 59.3 162 30.9
Nitab4.5_0007106g0010 Nicotiana tabacum HOM05D002422 ORTHO05D002569 7.3e-07 59.3 134 36.6
Sp6g16650 Schrenkiella parvula HOM05D000186 ORTHO05D001471 7.3e-07 59.3 71 42.3
Duzib170G0245 Durio zibethinus HOM05D000186 ORTHO05D001471 9.5e-07 58.9 102 35.3
Lsat_1_v5_gn_0_6940 Lactuca sativa HOM05D000186 ORTHO05D001471 9.5e-07 58.9 86 40.7
CiPaw.12G126100 Carya illinoinensis HOM05D000186 ORTHO05D001471 1.2e-06 58.5 102 36.3
Ca_27831_v3 Cicer arietinum L. HOM05D000186 ORTHO05D001471 1.2e-06 58.5 72 43.1
Oeu013856.1 Olea europaea HOM05D000186 ORTHO05D001471 1.2e-06 58.5 75 41.3
Potri.001G416800 Populus trichocarpa HOM05D000186 ORTHO05D001471 1.2e-06 58.5 102 35.3
Potri.011G132600 Populus trichocarpa HOM05D000186 ORTHO05D001471 1.2e-06 58.5 101 35.6
PGR083G2555 Punica granatum HOM05D000186 ORTHO05D001471 1.2e-06 58.5 86 39.5
Zm00001eb400380 Zea mays HOM05D000186 ORTHO05D001471 1.2e-06 58.5 86 38.4
Medtr4g133570 Medicago truncatula HOM05D000186 ORTHO05D001471 1.6e-06 58.2 71 43.7
QL08p013449 Quercus lobata HOM05D000186 ORTHO05D001471 1.6e-06 58.2 72 40.3
QL08p013769 Quercus lobata HOM05D000186 ORTHO05D001471 1.6e-06 58.2 72 40.3
Rhsim05G0013200 Rhododendron simsii HOM05D002422 ORTHO05D002569 1.6e-06 58.2 133 35.3
Aa31LG3G10620 Aethionema arabicum HOM05D000186 ORTHO05D001471 2.1e-06 57.8 85 40.0
PSO541G4417 Papaver somniferum HOM05D000186 ORTHO05D001471 2.1e-06 57.8 72 43.1
TAR636G2096 Trochodendron aralioides HOM05D000186 ORTHO05D001471 2.8e-06 57.4 98 37.8
Gorai.013G164000 Gossypium raimondii HOM05D000186 ORTHO05D001471 3.6e-06 57.0 102 37.3
Nitab4.5_0000024g0100 Nicotiana tabacum HOM05D002422 ORTHO05D002569 3.6e-06 57.0 134 35.8
Os03g0211800 Oryza sativa ssp. japonica HOM05D000186 ORTHO05D001471 3.6e-06 57.0 86 37.2
EL10Ac4g07984 Beta vulgaris HOM05D000186 ORTHO05D001471 4.7e-06 56.6 86 38.4
Gohir.A13G141500 Gossypium hirsutum HOM05D000186 ORTHO05D001471 4.7e-06 56.6 102 37.3
Hund23317 Selenicereus undatus HOM05D000186 ORTHO05D001471 6.2e-06 56.2 102 37.3
SEGI_38981 Sequoiadendron giganteum HOM05D000186 ORTHO05D001471 6.2e-06 56.2 86 38.4
Psat7g122240 Pisum sativum HOM05D000186 ORTHO05D001471 8.1e-06 55.8 72 40.3


User provided reference genes

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