Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 1.1e-237 826.2 411 100.0
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 3.0e-195 685.3 418 84.2
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 2.5e-154 549.3 415 70.6
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 1.2e-124 450.7 447 57.5
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 1.9e-109 400.2 437 54.9
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 2.1e-108 396.7 453 52.8
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 4.4e-98 362.5 402 48.8
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 2.0e-95 353.6 438 47.0
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 2.0e-95 353.6 438 47.0
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 4.6e-95 352.4 401 51.1
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 7.8e-95 351.7 424 47.2
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 1.0e-94 351.3 448 45.5
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 2.3e-94 350.1 389 49.4
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 1.1e-93 347.8 393 49.4
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 2.5e-93 346.7 416 47.1
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 2.5e-93 346.7 388 49.2
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 5.6e-93 345.5 429 48.5
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 5.6e-93 345.5 389 49.6
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 9.5e-93 344.7 400 51.0
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 2.1e-92 343.6 385 51.2
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 3.6e-92 342.8 429 49.0
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 4.7e-92 342.4 412 46.1
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 4.7e-92 342.4 418 46.9
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 6.2e-92 342.0 418 47.1
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 8.1e-92 341.7 383 49.3
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 1.1e-91 341.3 396 49.2
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 1.1e-91 341.3 394 47.7
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.4e-91 340.9 385 50.9
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 4.0e-91 339.3 402 48.0
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.2e-90 337.8 425 45.2
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 2.0e-90 337.0 414 46.4
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 2.0e-90 337.0 385 50.6
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 2.0e-90 337.0 393 46.3
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 4.4e-90 335.9 413 47.7
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 5.8e-90 335.5 381 48.8
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 2.2e-89 333.6 412 46.1
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 4.9e-89 332.4 401 49.6
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.9e-89 332.4 425 44.7
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 8.3e-89 331.6 386 49.2
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.9e-88 330.5 429 45.2
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 3.2e-88 329.7 438 45.2
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 4.1e-88 329.3 401 47.4
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 2.1e-87 327.0 393 48.6
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 2.1e-87 327.0 373 49.6
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 2.7e-87 326.6 369 50.7
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 3.5e-87 326.2 413 46.0
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 6.0e-87 325.5 385 50.1
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 1.0e-86 324.7 371 51.2
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 3.9e-86 322.8 405 45.7
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 8.6e-86 321.6 408 45.6
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 1.9e-85 320.5 360 48.3
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 4.3e-85 319.3 431 46.6
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 5.6e-85 318.9 394 48.0
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 3.6e-84 316.2 385 47.0
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 6.2e-84 315.5 333 50.5
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.1e-83 314.7 393 45.0
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 4.0e-83 312.8 439 42.1
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 8.9e-83 311.6 386 44.0
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 8.9e-83 311.6 393 45.8
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.6e-82 310.1 404 45.0
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 2.6e-82 310.1 394 46.2
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 9.9e-82 308.1 404 44.6
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.7e-81 307.4 390 44.1
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 1.7e-81 307.4 443 43.3
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.2e-81 307.0 399 44.6
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 3.7e-81 306.2 384 45.3
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 4.9e-81 305.8 383 45.7
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 6.4e-81 305.4 398 45.0
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 8.4e-81 305.1 389 45.0
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 2.4e-80 303.5 389 44.7
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 3.2e-80 303.1 383 45.7
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 7.1e-80 302.0 383 44.1
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.2e-79 301.2 383 44.4
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 2.1e-79 300.4 403 44.9
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 2.7e-79 300.1 391 44.5
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 2.7e-79 300.1 391 44.5
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 2.7e-79 300.1 391 44.5
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 3.5e-79 299.7 420 46.0
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 7.8e-79 298.5 384 46.6
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 9.6e-77 291.6 391 44.8
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.2e-76 291.2 395 43.0
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 2.8e-76 290.0 410 42.0
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.1e-75 288.1 396 43.2
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 4.0e-75 286.2 398 43.0
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 1.2e-74 284.6 337 49.9
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 1.2e-74 284.6 466 39.9
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 2.2e-73 280.4 443 42.9
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 2.9e-73 280.0 283 54.4
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 2.9e-73 280.0 491 39.1
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 2.4e-72 276.9 396 43.7
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 3.2e-72 276.6 334 48.5
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 3.2e-72 276.6 313 50.5
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 1.6e-71 274.2 392 43.9
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.6e-71 274.2 408 42.2
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 1.6e-71 274.2 207 71.5
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.6e-71 272.7 365 43.3
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 1.0e-70 271.6 356 43.3
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 2.5e-69 266.9 416 40.9
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 3.3e-69 266.5 256 54.7
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 6.2e-68 262.3 388 44.1
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 1.2e-66 258.1 238 59.2
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 7.6e-66 255.4 379 40.9
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 2.2e-65 253.8 303 48.5
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 2.4e-64 250.4 366 40.2
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.8e-59 234.2 257 49.0
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 9.9e-58 228.4 370 41.4
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 3.2e-56 223.4 293 45.1
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.8e-54 217.6 359 38.7
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 6.2e-52 209.1 270 44.8
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 1.0e-49 201.8 302 39.1
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 3.0e-46 190.3 414 34.3
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 6.7e-46 189.1 251 44.2
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 3.1e-43 180.3 370 34.6
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 1.5e-42 177.9 219 48.9
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 8.4e-41 172.2 204 48.5
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 2.1e-39 167.5 544 27.8
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 6.1e-39 166.0 216 44.4
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 2.6e-34 150.6 268 37.7
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.7e-33 147.9 416 27.2
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 2.2e-33 147.5 231 40.7
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 2.2e-33 147.5 231 40.7
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 5.0e-33 146.4 246 39.8
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 1.1e-32 145.2 470 28.3
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 2.7e-31 140.6 196 41.8
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 3.0e-30 137.1 181 46.4
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 5.1e-30 136.3 181 42.0
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 4.3e-29 133.3 209 41.6
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 3.4e-26 123.6 212 38.7
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 3.8e-25 120.2 179 43.0
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 1.1e-24 118.6 310 29.7
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 3.2e-24 117.1 142 46.5
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 1.1e-21 108.6 157 38.2
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 9.1e-19 99.0 99 51.5
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 1.2e-15 88.6 127 38.6
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 2.7e-15 87.4 130 37.7
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 4.7e-15 86.7 169 34.3
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 8.0e-15 85.9 164 33.5
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 1.4e-14 85.1 156 34.6
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 1.8e-14 84.7 103 41.7
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 1.5e-13 81.6 92 43.5
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 3.3e-13 80.5 66 54.5
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 1.7e-12 78.2 88 46.6
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 1.7e-12 78.2 58 62.1
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 4.8e-12 76.6 126 40.5
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 2.4e-11 74.3 136 36.0
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 6.5e-09 66.2 124 29.8
Oeu012237.1 Olea europaea HOM05D004964 ORTHO05D005918 1.6e-07 61.6 74 44.6
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 1.0e-06 58.9 99 35.4
Lsat_1_v5_gn_6_39820 Lactuca sativa HOM05D004964 ORTHO05D005918 8.8e-06 55.8 59 45.8


User provided reference genes

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