Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 7.1e-68 260.4 123 100.0
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 2.2e-21 105.9 106 58.5
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 2.7e-19 99.0 62 75.8
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 2.7e-19 99.0 50 96.0
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.0e-18 97.1 50 94.0
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.4e-18 96.7 52 88.5
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.9e-18 95.1 50 92.0
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 5.1e-18 94.7 50 90.0
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 5.1e-18 94.7 50 90.0
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 6.7e-18 94.4 50 90.0
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 6.7e-18 94.4 50 90.0
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 6.7e-18 94.4 79 64.6
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 6.7e-18 94.4 50 92.0
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.8e-18 94.0 50 92.0
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.8e-18 94.0 50 92.0
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 1.1e-17 93.6 50 88.0
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-17 93.6 50 90.0
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 1.5e-17 93.2 50 88.0
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.5e-17 93.2 51 86.3
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.5e-17 93.2 51 88.2
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.9e-17 92.8 50 90.0
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 1.9e-17 92.8 50 90.0
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 2.5e-17 92.4 50 86.0
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 2.5e-17 92.4 50 86.0
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 2.5e-17 92.4 50 88.0
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 2.5e-17 92.4 50 88.0
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 2.5e-17 92.4 50 86.0
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 3.3e-17 92.0 50 86.0
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 3.3e-17 92.0 50 88.0
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 3.3e-17 92.0 50 86.0
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 3.3e-17 92.0 50 86.0
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 3.3e-17 92.0 50 86.0
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 3.3e-17 92.0 50 86.0
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 3.3e-17 92.0 50 86.0
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 3.3e-17 92.0 50 88.0
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 3.3e-17 92.0 50 86.0
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 3.3e-17 92.0 50 90.0
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 3.3e-17 92.0 50 90.0
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 3.3e-17 92.0 50 86.0
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 4.3e-17 91.7 50 84.0
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 4.3e-17 91.7 50 88.0
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 4.3e-17 91.7 50 88.0
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.3e-17 91.7 50 88.0
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 4.3e-17 91.7 50 88.0
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 4.3e-17 91.7 50 88.0
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 5.7e-17 91.3 52 80.8
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 5.7e-17 91.3 108 54.6
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 5.7e-17 91.3 50 86.0
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 5.7e-17 91.3 50 88.0
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.7e-17 91.3 50 88.0
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 5.7e-17 91.3 50 86.0
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 5.7e-17 91.3 50 88.0
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 7.4e-17 90.9 50 86.0
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 7.4e-17 90.9 50 84.0
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 7.4e-17 90.9 50 86.0
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 7.4e-17 90.9 50 84.0
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 7.4e-17 90.9 50 86.0
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 7.4e-17 90.9 50 86.0
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 7.4e-17 90.9 50 86.0
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 7.4e-17 90.9 50 86.0
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 9.7e-17 90.5 50 84.0
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 9.7e-17 90.5 50 84.0
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 9.7e-17 90.5 50 84.0
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 9.7e-17 90.5 50 84.0
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 9.7e-17 90.5 50 84.0
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 9.7e-17 90.5 50 86.0
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 9.7e-17 90.5 50 86.0
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 9.7e-17 90.5 50 86.0
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 9.7e-17 90.5 50 86.0
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 9.7e-17 90.5 50 86.0
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 9.7e-17 90.5 50 86.0
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 9.7e-17 90.5 50 86.0
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.3e-16 90.1 50 86.0
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 1.3e-16 90.1 50 86.0
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.3e-16 90.1 50 86.0
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.3e-16 90.1 50 86.0
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.3e-16 90.1 50 84.0
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.3e-16 90.1 50 88.0
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.3e-16 90.1 50 88.0
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.3e-16 90.1 50 86.0
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.3e-16 90.1 50 86.0
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.7e-16 89.7 50 86.0
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.7e-16 89.7 50 82.0
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 1.7e-16 89.7 50 88.0
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 1.7e-16 89.7 50 84.0
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 1.7e-16 89.7 50 82.0
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 2.2e-16 89.4 50 82.0
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 2.2e-16 89.4 107 48.6
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 2.2e-16 89.4 50 86.0
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 2.2e-16 89.4 50 84.0
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 2.2e-16 89.4 50 84.0
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 2.2e-16 89.4 48 89.6
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 2.2e-16 89.4 48 89.6
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.7e-16 88.6 50 82.0
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 3.7e-16 88.6 115 49.6
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 3.7e-16 88.6 50 82.0
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 4.8e-16 88.2 55 78.2
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 6.3e-16 87.8 50 82.0
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 6.3e-16 87.8 50 82.0
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 6.3e-16 87.8 50 82.0
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 6.3e-16 87.8 50 82.0
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.1e-15 87.0 50 82.0
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.1e-15 87.0 50 84.0
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.4e-15 86.7 49 83.7
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.4e-15 86.7 50 86.0
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.4e-15 86.7 50 82.0
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.4e-15 86.7 109 47.7
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 1.8e-15 86.3 50 84.0
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 1.8e-15 86.3 50 82.0
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.8e-15 86.3 50 82.0
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.8e-15 86.3 50 82.0
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 1.8e-15 86.3 50 82.0
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 2.4e-15 85.9 50 86.0
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.4e-15 85.9 50 82.0
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.1e-15 85.5 50 80.0
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 3.1e-15 85.5 50 82.0
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 4.1e-15 85.1 50 82.0
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 5.3e-15 84.7 52 76.9
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 6.9e-15 84.3 50 80.0
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 6.9e-15 84.3 51 74.5
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 9.1e-15 84.0 50 80.0
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.2e-14 83.6 53 73.6
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.5e-14 83.2 48 81.2
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 3.4e-14 82.0 50 82.0
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.0e-13 80.5 50 68.0
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.7e-13 79.7 106 48.1
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 2.2e-13 79.3 111 48.6
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 8.5e-13 77.4 50 80.0
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 1.4e-12 76.6 50 68.0
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 6.7e-10 67.8 89 46.1
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 5.7e-09 64.7 57 57.9
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.7e-09 64.7 35 85.7
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 5.7e-09 64.7 35 85.7
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 9.1e-07 57.4 36 72.2


User provided reference genes

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